RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 ERICH5Q6P6B1 374 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 TTC23LQ6PF05 361 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 ZNF852Q6ZMS4 543 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 ANKS3Q6ZW76 656 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 UBE2R2Q712K3 238 aaPredicted RBP5.22□□□□□ -1.57
LIMA1-212ENST00000552491 CHST9Q7L1S5 443 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 VASH1Q7L8A9 365 aaPredicted RBP5.22□□□□□ -1.57
LIMA1-212ENST00000552491 CCDC190Q86UF4 302 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 APCDD1Q8J025 514 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 NAGSQ8N159 534 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 NXPE1Q8N323 547 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 L3MBTL4Q8NA19 623 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 OR9Q2Q8NGE9 314 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 OR6F1Q8NGZ6 308 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 BCL7CQ8WUZ0 217 aaPredicted RBP5.22□□□□□ -1.57
LIMA1-212ENST00000552491 MYDGFQ969H8 173 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 ALG14Q96F25 216 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 FCRL1Q96LA6 429 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 P2RY13Q9BPV8 354 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 KCNS3Q9BQ31 491 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 CCM2Q9BSQ5 444 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 BBS2Q9BXC9 721 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 ROGDIQ9GZN7 287 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 XRN2Q9H0D6 950 aaKnown RBP eCLIP5.22□□□□□ -1.57
LIMA1-212ENST00000552491 CWH43Q9H720 699 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 FZD4Q9ULV1 537 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 N6AMT1Q9Y5N5 214 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 C1orf226A1L170 272 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 GABRR3A8MPY1 467 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 NPIPB8E9PQR5 432 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 RGS13O14921 159 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 KIAA0513O60268 411 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 TBL1XO60907 577 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 CCNKO75909 580 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 SNX4O95219 450 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 MED26O95402 600 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 C1SP09871 688 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 HLA-EP13747 358 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 COX7A2P14406 83 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 POU2F1P14859 743 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 HMGA1P17096 107 aaKnown RBP5.22□□□□□ -1.57
LIMA1-212ENST00000552491 PIK3CBP42338 1070 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 TGM4P49221 684 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 SLC11A1P49279 550 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 RACK1P63244 317 aaKnown RBP5.22□□□□□ -1.57
LIMA1-212ENST00000552491 HSPA14Q0VDF9 509 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 PPIGQ13427 754 aaKnown RBP eCLIP5.22□□□□□ -1.57
LIMA1-212ENST00000552491 VEZF1Q14119 521 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 SSX1Q16384 188 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 LRRC26Q2I0M4 334 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 FBXO43Q4G163 708 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 BCL7AQ4VC05 210 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 ATP13A5Q4VNC0 1218 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 INO80DQ53TQ3 878 aaPredicted RBP5.22□□□□□ -1.57
LIMA1-212ENST00000552491 ZMAT1Q5H9K5 638 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 COX20Q5RI15 118 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 C10orf62Q5T681 223 aaPredicted RBP5.22□□□□□ -1.57
LIMA1-212ENST00000552491 AGAP6Q5VW22 663 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 RSBN1Q5VWQ0 802 aaPredicted RBP5.22□□□□□ -1.57
LIMA1-212ENST00000552491 SLX4IPQ5VYV7 408 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 FRG2Q64ET8 278 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 C17orf99Q6UX52 265 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 SERPINA13PQ6UXR4 307 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 SLC24A5Q71RS6 500 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 ATCAYQ86WG3 371 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 SYT12Q8IV01 421 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 CACTIN-AS1Q8N1I8 211 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 OR10G2Q8NGC3 310 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 OR4C15Q8NGM1 316 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 FOXJ1Q92949 421 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 AGAP4Q96P64 663 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 FRG2BQ96QU4 278 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 SLC22A12Q96S37 553 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 MTERF1Q99551 399 aaKnown RBP5.22□□□□□ -1.57
LIMA1-212ENST00000552491 RAD9AQ99638 391 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 HTATIP2Q9BUP3 242 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 CEP44Q9C0F1 390 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 EHD3Q9NZN3 535 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 CCDC59Q9P031 241 aaKnown RBP5.22□□□□□ -1.57
LIMA1-212ENST00000552491 MUTYHQ9UIF7 546 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 TMPRSS11EQ9UL52 423 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 MKLN1Q9UL63 735 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 CLEC4EQ9ULY5 219 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 TMEM98Q9Y2Y6 226 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 PCDHB11Q9Y5F2 797 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 SNX8Q9Y5X2 465 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 PEX16Q9Y5Y5 336 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 PCM1Q15154 2024 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 MYOFQ9NZM1 2061 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 DOCK6Q96HP0 2047 aa5.22□□□□□ -1.57
LIMA1-212ENST00000552491 ANKRD34BA5PLL1 514 aa5.21□□□□□ -1.57
LIMA1-212ENST00000552491 NPIPB15A6NHN6 443 aaPredicted RBP5.21□□□□□ -1.57
LIMA1-212ENST00000552491 AGAP14A8MT82 685 aa5.21□□□□□ -1.57
LIMA1-212ENST00000552491 FAM227AF5H4B4 570 aa5.21□□□□□ -1.57
LIMA1-212ENST00000552491 H3BM21 787 aa5.21□□□□□ -1.57
LIMA1-212ENST00000552491 TNFRSF11BO00300 401 aa5.21□□□□□ -1.57
LIMA1-212ENST00000552491 HOXC11O43248 304 aaPredicted RBP5.21□□□□□ -1.57
LIMA1-212ENST00000552491 SUV39H1O43463 412 aa5.21□□□□□ -1.57
LIMA1-212ENST00000552491 ZNF821O75541 412 aaPredicted RBP5.21□□□□□ -1.57
LIMA1-212ENST00000552491 GPX5O75715 221 aa5.21□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms