RNA–Protein interactions for RNA: ENST00000550857.5

PTPRB-209, Transcript of protein tyrosine phosphatase, receptor type B, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPRB, Length 5,839 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRB-209ENST00000550857 MRPS25P82663 173 aaKnown RBP7.78□□□□□ -1.16
PTPRB-209ENST00000550857 ADAMTSL4Q6UY14 1074 aa7.78□□□□□ -1.16
PTPRB-209ENST00000550857 CPSF7Q8N684 471 aaKnown RBP7.78□□□□□ -1.16
PTPRB-209ENST00000550857 CPEB3Q8NE35 698 aaKnown RBP7.78□□□□□ -1.16
PTPRB-209ENST00000550857 ZNF671Q8TAW3 534 aa7.78□□□□□ -1.16
PTPRB-209ENST00000550857 SLC44A1Q8WWI5 657 aa7.78□□□□□ -1.16
PTPRB-209ENST00000550857 DNAJC9Q8WXX5 260 aa7.78□□□□□ -1.16
PTPRB-209ENST00000550857 TAAR9Q96RI9 348 aa7.78□□□□□ -1.16
PTPRB-209ENST00000550857 RTKNQ9BST9 563 aa7.78□□□□□ -1.16
PTPRB-209ENST00000550857 CYB5BO43169 146 aa7.78□□□□□ -1.16
PTPRB-209ENST00000550857 MATN1P21941 496 aa7.78□□□□□ -1.16
PTPRB-209ENST00000550857 CD70P32970 193 aa7.78□□□□□ -1.16
PTPRB-209ENST00000550857 GPR3P46089 330 aa7.78□□□□□ -1.16
PTPRB-209ENST00000550857 RAET1LQ5VY80 246 aa7.78□□□□□ -1.16
PTPRB-209ENST00000550857 RPL13AP3Q6NVV1 102 aa7.78□□□□□ -1.16
PTPRB-209ENST00000550857 C5orf46Q6UWT4 87 aa7.78□□□□□ -1.16
PTPRB-209ENST00000550857 CRELD2Q6UXH1 353 aaPredicted RBP7.78□□□□□ -1.16
PTPRB-209ENST00000550857 PDZD3Q86UT5 571 aa7.78□□□□□ -1.16
PTPRB-209ENST00000550857 BBS10Q8TAM1 723 aa7.78□□□□□ -1.16
PTPRB-209ENST00000550857 ZNF516Q92618 1163 aa7.78□□□□□ -1.16
PTPRB-209ENST00000550857 RNF31Q96EP0 1072 aa7.78□□□□□ -1.16
PTPRB-209ENST00000550857 DPH7Q9BTV6 452 aa7.78□□□□□ -1.16
PTPRB-209ENST00000550857 KLHL25Q9H0H3 589 aa7.78□□□□□ -1.16
PTPRB-209ENST00000550857 XYLT2Q9H1B5 865 aa7.78□□□□□ -1.16
PTPRB-209ENST00000550857 CHRAC1Q9NRG0 131 aa7.78□□□□□ -1.16
PTPRB-209ENST00000550857 HCFC1R1Q9NWW0 138 aa7.78□□□□□ -1.16
PTPRB-209ENST00000550857 IKZF2Q9UKS7 526 aa7.78□□□□□ -1.16
PTPRB-209ENST00000550857 TP53P04637 393 aaPredicted RBP7.78□□□□□ -1.16
PTPRB-209ENST00000550857 PCMT1P22061 227 aa7.78□□□□□ -1.16
PTPRB-209ENST00000550857 IRS1P35568 1242 aa7.78□□□□□ -1.16
PTPRB-209ENST00000550857 CAPZA1P52907 286 aa7.78□□□□□ -1.16
PTPRB-209ENST00000550857 SPIBQ01892 262 aa7.78□□□□□ -1.16
PTPRB-209ENST00000550857 KLC1Q07866 573 aa7.78□□□□□ -1.16
PTPRB-209ENST00000550857 RAB39AQ14964 217 aa7.78□□□□□ -1.16
PTPRB-209ENST00000550857 MLC1Q15049 377 aa7.78□□□□□ -1.16
PTPRB-209ENST00000550857 GCNT7Q6ZNI0 430 aa7.78□□□□□ -1.16
PTPRB-209ENST00000550857 SSX8Q7RTT4 187 aa7.78□□□□□ -1.16
PTPRB-209ENST00000550857 ZER1Q7Z7L7 766 aa7.78□□□□□ -1.16
PTPRB-209ENST00000550857 OR5P2Q8WZ92 322 aa7.78□□□□□ -1.16
PTPRB-209ENST00000550857 TMBIM4Q9HC24 238 aa7.78□□□□□ -1.16
PTPRB-209ENST00000550857 SPAG4Q9NPE6 437 aa7.78□□□□□ -1.16
PTPRB-209ENST00000550857 PAQR5Q9NXK6 330 aaPredicted RBP7.78□□□□□ -1.16
PTPRB-209ENST00000550857 TAAR2Q9P1P5 351 aa7.78□□□□□ -1.16
PTPRB-209ENST00000550857 MBD1Q9UIS9 605 aaPredicted RBP7.78□□□□□ -1.16
PTPRB-209ENST00000550857 SALL4Q9UJQ4 1053 aa7.78□□□□□ -1.16
PTPRB-209ENST00000550857 PRPF19Q9UMS4 504 aaKnown RBP7.78□□□□□ -1.16
PTPRB-209ENST00000550857 RTCAO00442 366 aaKnown RBP7.78□□□□□ -1.16
PTPRB-209ENST00000550857 ARHGAP33O14559 1287 aa7.78□□□□□ -1.16
PTPRB-209ENST00000550857 RSL1D1O76021 490 aaKnown RBP7.78□□□□□ -1.16
PTPRB-209ENST00000550857 MTHFD1P11586 935 aaKnown RBP7.78□□□□□ -1.16
PTPRB-209ENST00000550857 SLC6A6P31641 620 aa7.78□□□□□ -1.16
PTPRB-209ENST00000550857 PTDSS1P48651 473 aaKnown RBP7.78□□□□□ -1.16
PTPRB-209ENST00000550857 GPR143P51810 404 aa7.78□□□□□ -1.16
PTPRB-209ENST00000550857 ATXN1P54253 815 aaKnown RBP7.78□□□□□ -1.16
PTPRB-209ENST00000550857 PCBP4P57723 403 aaKnown RBP7.78□□□□□ -1.16
PTPRB-209ENST00000550857 HYAL1Q12794 435 aa7.78□□□□□ -1.16
PTPRB-209ENST00000550857 RIN1Q13671 783 aa7.78□□□□□ -1.16
PTPRB-209ENST00000550857 ANGPT1Q15389 498 aa7.78□□□□□ -1.16
PTPRB-209ENST00000550857 SMAD2Q15796 467 aaKnown RBP7.78□□□□□ -1.16
PTPRB-209ENST00000550857 CDKN3Q16667 212 aa7.78□□□□□ -1.16
PTPRB-209ENST00000550857 EIF2S3LQ2VIR3 472 aaKnown RBP7.78□□□□□ -1.16
PTPRB-209ENST00000550857 IFI44LQ53G44 452 aa7.78□□□□□ -1.16
PTPRB-209ENST00000550857 TTMPQ5BVD1 217 aa7.78□□□□□ -1.16
PTPRB-209ENST00000550857 IL23RQ5VWK5 629 aa7.78□□□□□ -1.16
PTPRB-209ENST00000550857 GTPBP3Q969Y2 492 aaKnown RBP7.78□□□□□ -1.16
PTPRB-209ENST00000550857 GAL3ST3Q96A11 431 aa7.78□□□□□ -1.16
PTPRB-209ENST00000550857 AGAP2Q99490 1192 aa7.78□□□□□ -1.16
PTPRB-209ENST00000550857 GPATCH1Q9BRR8 931 aaKnown RBP7.78□□□□□ -1.16
PTPRB-209ENST00000550857 LINC00597Q9H2U6 94 aa7.78□□□□□ -1.16
PTPRB-209ENST00000550857 CHRDQ9H2X0 955 aa7.78□□□□□ -1.16
PTPRB-209ENST00000550857 NDRG3Q9UGV2 375 aa7.78□□□□□ -1.16
PTPRB-209ENST00000550857 CYTH4Q9UIA0 394 aa7.78□□□□□ -1.16
PTPRB-209ENST00000550857 KIAA0100Q14667 2235 aaKnown RBP7.78□□□□□ -1.16
PTPRB-209ENST00000550857 PMS2P1A4D2B8 440 aa7.77□□□□□ -1.16
PTPRB-209ENST00000550857 J3KR12 359 aa7.77□□□□□ -1.16
PTPRB-209ENST00000550857 SURF4O15260 269 aa7.77□□□□□ -1.16
PTPRB-209ENST00000550857 FAM20BO75063 409 aa7.77□□□□□ -1.16
PTPRB-209ENST00000550857 CSTBP04080 98 aaKnown RBP7.77□□□□□ -1.16
PTPRB-209ENST00000550857 PORP16435 677 aaPredicted RBP7.77□□□□□ -1.16
PTPRB-209ENST00000550857 S100A7P31151 101 aa7.77□□□□□ -1.16
PTPRB-209ENST00000550857 ABCG1P45844 678 aa7.77□□□□□ -1.16
PTPRB-209ENST00000550857 STK19P49842 368 aaPredicted RBP7.77□□□□□ -1.16
PTPRB-209ENST00000550857 INAQ16352 499 aa7.77□□□□□ -1.16
PTPRB-209ENST00000550857 FBXO42Q6P3S6 717 aa7.77□□□□□ -1.16
PTPRB-209ENST00000550857 KLHL17Q6TDP4 642 aa7.77□□□□□ -1.16
PTPRB-209ENST00000550857 KRT74Q7RTS7 529 aa7.77□□□□□ -1.16
PTPRB-209ENST00000550857 SLC22A16Q86VW1 577 aa7.77□□□□□ -1.16
PTPRB-209ENST00000550857 KIF18BQ86Y91 864 aa7.77□□□□□ -1.16
PTPRB-209ENST00000550857 OR2T12Q8NG77 320 aa7.77□□□□□ -1.16
PTPRB-209ENST00000550857 MTERF3Q96E29 417 aa7.77□□□□□ -1.16
PTPRB-209ENST00000550857 ERGIC3Q9Y282 383 aa7.77□□□□□ -1.16
PTPRB-209ENST00000550857 PNMA8CA0A1B0GUJ8 204 aa7.77□□□□□ -1.17
PTPRB-209ENST00000550857 FADS2P1A8MWK0 482 aa7.77□□□□□ -1.17
PTPRB-209ENST00000550857 C5orf67F2Z3F1 127 aa7.77□□□□□ -1.17
PTPRB-209ENST00000550857 EMC8O43402 210 aa7.77□□□□□ -1.17
PTPRB-209ENST00000550857 GCH1P30793 250 aa7.77□□□□□ -1.17
PTPRB-209ENST00000550857 TRA2BP62995 288 aaKnown RBP7.77□□□□□ -1.17
PTPRB-209ENST00000550857 ZXDAP98168 799 aa7.77□□□□□ -1.17
PTPRB-209ENST00000550857 CDK3Q00526 305 aa7.77□□□□□ -1.17
PTPRB-209ENST00000550857 TMEM225Q6GV28 225 aa7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms