RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 TRIQKQ629K1 86 aa14.48□□□□□ -0.09
CUX1-214ENST00000550008 CHMP1BQ7LBR1 199 aa14.48□□□□□ -0.09
CUX1-214ENST00000550008 PACRGLQ8N7B6 248 aa14.48□□□□□ -0.09
CUX1-214ENST00000550008 OTUB2Q96DC9 234 aa14.48□□□□□ -0.09
CUX1-214ENST00000550008 KCNH6Q9H252 994 aa14.48□□□□□ -0.09
CUX1-214ENST00000550008 TRIM39Q9HCM9 518 aa14.48□□□□□ -0.09
CUX1-214ENST00000550008 CLEC4AQ9UMR7 237 aa14.48□□□□□ -0.09
CUX1-214ENST00000550008 GPR45Q9Y5Y3 372 aa14.48□□□□□ -0.09
CUX1-214ENST00000550008 HCFC2Q9Y5Z7 792 aa14.48□□□□□ -0.09
CUX1-214ENST00000550008 IGLV3-10A0A075B6K4 115 aa14.48□□□□□ -0.09
CUX1-214ENST00000550008 NDUFB5O43674 189 aa14.48□□□□□ -0.09
CUX1-214ENST00000550008 LATS1O95835 1130 aa14.48□□□□□ -0.09
CUX1-214ENST00000550008 CH25HO95992 272 aa14.48□□□□□ -0.09
CUX1-214ENST00000550008 F11P03951 625 aa14.48□□□□□ -0.09
CUX1-214ENST00000550008 FESP07332 822 aa14.48□□□□□ -0.09
CUX1-214ENST00000550008 GNAO1P09471 354 aa14.48□□□□□ -0.09
CUX1-214ENST00000550008 PRG2P13727 222 aa14.48□□□□□ -0.09
CUX1-214ENST00000550008 ETFAP13804 333 aa14.48□□□□□ -0.09
CUX1-214ENST00000550008 CD247P20963 164 aa14.48□□□□□ -0.09
CUX1-214ENST00000550008 PGDP52209 483 aa14.48□□□□□ -0.09
CUX1-214ENST00000550008 ZNF155Q12901 538 aaPredicted RBP14.48□□□□□ -0.09
CUX1-214ENST00000550008 BIKQ13323 160 aa14.48□□□□□ -0.09
CUX1-214ENST00000550008 VMACQ2NL98 169 aa14.48□□□□□ -0.09
CUX1-214ENST00000550008 KBTBD8Q8NFY9 601 aa14.48□□□□□ -0.09
CUX1-214ENST00000550008 TSPEARQ8WU66 669 aa14.48□□□□□ -0.09
CUX1-214ENST00000550008 SMARCD2Q92925 531 aa14.48□□□□□ -0.09
CUX1-214ENST00000550008 SLC38A4Q969I6 547 aa14.48□□□□□ -0.09
CUX1-214ENST00000550008 TMEM125Q96AQ2 219 aa14.48□□□□□ -0.09
CUX1-214ENST00000550008 C12orf43Q96C57 262 aaKnown RBP14.48□□□□□ -0.09
CUX1-214ENST00000550008 GPR78Q96P69 363 aa14.48□□□□□ -0.09
CUX1-214ENST00000550008 DOCK1Q14185 1865 aa14.47□□□□□ -0.09
CUX1-214ENST00000550008 TMCC2O75069 709 aa14.47□□□□□ -0.09
CUX1-214ENST00000550008 HLA-DQA2P01906 255 aa14.47□□□□□ -0.09
CUX1-214ENST00000550008 INHBCP55103 352 aa14.47□□□□□ -0.09
CUX1-214ENST00000550008 UBXN2BQ14CS0 331 aa14.47□□□□□ -0.09
CUX1-214ENST00000550008 PON2Q15165 354 aa14.47□□□□□ -0.09
CUX1-214ENST00000550008 ZZZ3Q8IYH5 903 aa14.47□□□□□ -0.09
CUX1-214ENST00000550008 CCDC116Q8IYX3 515 aa14.47□□□□□ -0.09
CUX1-214ENST00000550008 LILRA3Q8N6C8 439 aaPredicted RBP14.47□□□□□ -0.09
CUX1-214ENST00000550008 PROKR1Q8TCW9 393 aa14.47□□□□□ -0.09
CUX1-214ENST00000550008 TMIGD2Q96BF3 282 aa14.47□□□□□ -0.09
CUX1-214ENST00000550008 SPATA7Q9P0W8 599 aa14.47□□□□□ -0.09
CUX1-214ENST00000550008 SBF2Q86WG5 1849 aa14.47□□□□□ -0.09
CUX1-214ENST00000550008 A0A1W2PQU0 124 aa14.47□□□□□ -0.09
CUX1-214ENST00000550008 ARHGEF33A8MVX0 844 aa14.47□□□□□ -0.09
CUX1-214ENST00000550008 AP2A2O94973 939 aa14.47□□□□□ -0.09
CUX1-214ENST00000550008 ZNF182P17025 639 aaPredicted RBP14.47□□□□□ -0.09
CUX1-214ENST00000550008 SLC6A11P48066 632 aa14.47□□□□□ -0.09
CUX1-214ENST00000550008 CCT3P49368 545 aaKnown RBP14.47□□□□□ -0.09
CUX1-214ENST00000550008 SP140Q13342 867 aa14.47□□□□□ -0.09
CUX1-214ENST00000550008 ZNF776Q68DI1 518 aaPredicted RBP14.47□□□□□ -0.09
CUX1-214ENST00000550008 CDC73Q6P1J9 531 aa14.47□□□□□ -0.09
CUX1-214ENST00000550008 HTR3DQ70Z44 454 aa14.47□□□□□ -0.09
CUX1-214ENST00000550008 GPR151Q8TDV0 419 aa14.47□□□□□ -0.09
CUX1-214ENST00000550008 RIPOR3Q96MK2 946 aa14.47□□□□□ -0.09
CUX1-214ENST00000550008 STOX2Q9P2F5 926 aaPredicted RBP14.47□□□□□ -0.09
CUX1-214ENST00000550008 GSTK1Q9Y2Q3 226 aa14.47□□□□□ -0.09
CUX1-214ENST00000550008 KNTC1P50748 2209 aa14.47□□□□□ -0.09
CUX1-214ENST00000550008 CACNA1CQ13936 2221 aa14.47□□□□□ -0.09
CUX1-214ENST00000550008 B4DGG1 531 aa14.47□□□□□ -0.09
CUX1-214ENST00000550008 MITFO75030 526 aaPredicted RBP14.47□□□□□ -0.09
CUX1-214ENST00000550008 TCEA1P23193 301 aaKnown RBP14.47□□□□□ -0.09
CUX1-214ENST00000550008 TACR1P25103 407 aa14.47□□□□□ -0.09
CUX1-214ENST00000550008 MRPL43Q8N983 215 aaKnown RBP14.47□□□□□ -0.09
CUX1-214ENST00000550008 MACROD1Q9BQ69 325 aa14.47□□□□□ -0.09
CUX1-214ENST00000550008 SLC12A9Q9BXP2 914 aa14.47□□□□□ -0.09
CUX1-214ENST00000550008 RBCK1Q9BYM8 510 aa14.47□□□□□ -0.09
CUX1-214ENST00000550008 PCBD2Q9H0N5 130 aa14.47□□□□□ -0.09
CUX1-214ENST00000550008 LMAN2LQ9H0V9 348 aa14.47□□□□□ -0.09
CUX1-214ENST00000550008 GTPBP1O00178 669 aaKnown RBP14.46□□□□□ -0.09
CUX1-214ENST00000550008 CD36P16671 472 aa14.46□□□□□ -0.09
CUX1-214ENST00000550008 MAGEA10P43363 369 aaPredicted RBP14.46□□□□□ -0.09
CUX1-214ENST00000550008 CCR3P51677 355 aa14.46□□□□□ -0.09
CUX1-214ENST00000550008 CLDN8P56748 225 aa14.46□□□□□ -0.09
CUX1-214ENST00000550008 STXBP1P61764 594 aaKnown RBP14.46□□□□□ -0.09
CUX1-214ENST00000550008 PCDH1Q08174 1060 aa14.46□□□□□ -0.09
CUX1-214ENST00000550008 EGFLAMQ63HQ2 1017 aa14.46□□□□□ -0.09
CUX1-214ENST00000550008 PGM2L1Q6PCE3 622 aa14.46□□□□□ -0.09
CUX1-214ENST00000550008 KLHL35Q6PF15 583 aa14.46□□□□□ -0.09
CUX1-214ENST00000550008 TRAF7Q6Q0C0 670 aa14.46□□□□□ -0.09
CUX1-214ENST00000550008 OR5AR1Q8NGP9 310 aa14.46□□□□□ -0.09
CUX1-214ENST00000550008 RBM18Q96H35 190 aaKnown RBP14.46□□□□□ -0.09
CUX1-214ENST00000550008 SORBS1Q9BX66 1292 aaKnown RBP14.46□□□□□ -0.09
CUX1-214ENST00000550008 ACPTQ9BZG2 426 aa14.46□□□□□ -0.09
CUX1-214ENST00000550008 REEP4Q9H6H4 257 aa14.46□□□□□ -0.09
CUX1-214ENST00000550008 RETREG1Q9H6L5 497 aa14.46□□□□□ -0.09
CUX1-214ENST00000550008 ATXN10Q9UBB4 475 aa14.46□□□□□ -0.09
CUX1-214ENST00000550008 PCDHB3Q9Y5E6 796 aa14.46□□□□□ -0.09
CUX1-214ENST00000550008 SCN2BO60939 215 aa14.46□□□□□ -0.09
CUX1-214ENST00000550008 HSD17B1P14061 328 aa14.46□□□□□ -0.09
CUX1-214ENST00000550008 CSNK2A2P19784 350 aaPredicted RBP14.46□□□□□ -0.09
CUX1-214ENST00000550008 FPR1P21462 350 aa14.46□□□□□ -0.09
CUX1-214ENST00000550008 TIA1P31483 386 aaKnown RBP eCLIP14.46□□□□□ -0.092e-8■■■■■ 40
CUX1-214ENST00000550008 SLC13A2Q13183 592 aa14.46□□□□□ -0.09
CUX1-214ENST00000550008 C1orf61Q13536 156 aa14.46□□□□□ -0.09
CUX1-214ENST00000550008 LHX8Q68G74 356 aa14.46□□□□□ -0.09
CUX1-214ENST00000550008 ZNF551Q7Z340 670 aaPredicted RBP14.46□□□□□ -0.09
CUX1-214ENST00000550008 LILRA2Q8N149 483 aa14.46□□□□□ -0.09
CUX1-214ENST00000550008 OR7G3Q8NG95 312 aa14.46□□□□□ -0.09
CUX1-214ENST00000550008 OR8J3Q8NGG0 315 aa14.46□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms