RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 LUZP2Q86TE4 346 aa15.72■□□□□ 0.11
CUX1-213ENST00000549414 OTUB2Q96DC9 234 aa15.72■□□□□ 0.11
CUX1-213ENST00000549414 ZNF347Q96SE7 839 aa15.72■□□□□ 0.11
CUX1-213ENST00000549414 IL23AQ9NPF7 189 aa15.72■□□□□ 0.11
CUX1-213ENST00000549414 CHURC1-FNTBB4DL54 471 aa15.72■□□□□ 0.11
CUX1-213ENST00000549414 IL3P08700 152 aa15.72■□□□□ 0.11
CUX1-213ENST00000549414 DHPSP49366 369 aaPredicted RBP15.72■□□□□ 0.11
CUX1-213ENST00000549414 BTN3A2P78410 334 aa15.72■□□□□ 0.11
CUX1-213ENST00000549414 COX10Q12887 443 aa15.72■□□□□ 0.11
CUX1-213ENST00000549414 ELAVL3Q14576 367 aaKnown RBP15.72■□□□□ 0.11
CUX1-213ENST00000549414 GPR68Q15743 365 aa15.72■□□□□ 0.11
CUX1-213ENST00000549414 CEP78Q5JTW2 689 aa15.72■□□□□ 0.11
CUX1-213ENST00000549414 CTSL3PQ5NE16 218 aa15.72■□□□□ 0.11
CUX1-213ENST00000549414 ALKBH2Q6NS38 261 aa15.72■□□□□ 0.11
CUX1-213ENST00000549414 KLHL35Q6PF15 583 aa15.72■□□□□ 0.11
CUX1-213ENST00000549414 HSD11B1LQ7Z5J1 315 aa15.72■□□□□ 0.11
CUX1-213ENST00000549414 FAM98AQ8NCA5 519 aaKnown RBP15.72■□□□□ 0.11
CUX1-213ENST00000549414 FAM46DQ8NEK8 389 aa15.72■□□□□ 0.11
CUX1-213ENST00000549414 SHKBP1Q8TBC3 707 aa15.72■□□□□ 0.11
CUX1-213ENST00000549414 GPR151Q8TDV0 419 aa15.72■□□□□ 0.11
CUX1-213ENST00000549414 MAL2Q969L2 176 aa15.72■□□□□ 0.11
CUX1-213ENST00000549414 MRPL48Q96GC5 212 aaKnown RBP15.72■□□□□ 0.11
CUX1-213ENST00000549414 RBM18Q96H35 190 aaKnown RBP15.72■□□□□ 0.11
CUX1-213ENST00000549414 F2RL3Q96RI0 385 aa15.72■□□□□ 0.11
CUX1-213ENST00000549414 INPP5KQ9BT40 448 aa15.72■□□□□ 0.11
CUX1-213ENST00000549414 LAMP1P11279 417 aa15.71■□□□□ 0.11
CUX1-213ENST00000549414 KDELR2P33947 212 aa15.71■□□□□ 0.11
CUX1-213ENST00000549414 SRP54P61011 504 aaKnown RBP15.71■□□□□ 0.11
CUX1-213ENST00000549414 RAPSNQ13702 412 aa15.71■□□□□ 0.11
CUX1-213ENST00000549414 MBTPS1Q14703 1052 aa15.71■□□□□ 0.11
CUX1-213ENST00000549414 RETREG3Q86VR2 466 aa15.71■□□□□ 0.11
CUX1-213ENST00000549414 EGLN2Q96KS0 407 aa15.71■□□□□ 0.11
CUX1-213ENST00000549414 SLC38A3Q99624 504 aa15.71■□□□□ 0.11
CUX1-213ENST00000549414 TRNAU1APQ9NX07 287 aaKnown RBP15.71■□□□□ 0.11
CUX1-213ENST00000549414 A0A096LPI6 279 aa15.71■□□□□ 0.11
CUX1-213ENST00000549414 C1GALT1C1LP0DN25 315 aa15.71■□□□□ 0.11
CUX1-213ENST00000549414 HSD17B1P14061 328 aa15.71■□□□□ 0.11
CUX1-213ENST00000549414 BMPR1AP36894 532 aa15.71■□□□□ 0.11
CUX1-213ENST00000549414 CCT3P49368 545 aaKnown RBP15.71■□□□□ 0.11
CUX1-213ENST00000549414 LRP8Q14114 963 aa15.71■□□□□ 0.11
CUX1-213ENST00000549414 DOK4Q8TEW6 326 aa15.71■□□□□ 0.11
CUX1-213ENST00000549414 REEP4Q9H6H4 257 aa15.71■□□□□ 0.11
CUX1-213ENST00000549414 LHX3Q9UBR4 397 aa15.71■□□□□ 0.11
CUX1-213ENST00000549414 RIMKLBQ9ULI2 386 aa15.71■□□□□ 0.11
CUX1-213ENST00000549414 ZNF860A6NHJ4 632 aa15.71■□□□□ 0.11
CUX1-213ENST00000549414 C9P02748 559 aa15.71■□□□□ 0.11
CUX1-213ENST00000549414 HIST1H2ABP04908 130 aa15.71■□□□□ 0.11
CUX1-213ENST00000549414 ZNF182P17025 639 aaPredicted RBP15.71■□□□□ 0.11
CUX1-213ENST00000549414 IL12AP29459 219 aa15.71■□□□□ 0.11
CUX1-213ENST00000549414 CCR7P32248 378 aa15.71■□□□□ 0.11
CUX1-213ENST00000549414 INHBCP55103 352 aa15.71■□□□□ 0.11
CUX1-213ENST00000549414 LIPJQ5W064 366 aa15.71■□□□□ 0.11
CUX1-213ENST00000549414 USP30Q70CQ3 517 aa15.71■□□□□ 0.11
CUX1-213ENST00000549414 HIST3H2AQ7L7L0 130 aa15.71■□□□□ 0.11
CUX1-213ENST00000549414 GHDCQ8N2G8 530 aa15.71■□□□□ 0.11
CUX1-213ENST00000549414 COX18Q8N8Q8 333 aa15.71■□□□□ 0.11
CUX1-213ENST00000549414 HIST1H2ACQ93077 130 aa15.71■□□□□ 0.11
CUX1-213ENST00000549414 FZD3Q9NPG1 666 aa15.71■□□□□ 0.11
CUX1-213ENST00000549414 OR1A2Q9Y585 309 aa15.71■□□□□ 0.11
CUX1-213ENST00000549414 FEZF1A0PJY2 475 aa15.7■□□□□ 0.1
CUX1-213ENST00000549414 SNX4O95219 450 aa15.7■□□□□ 0.1
CUX1-213ENST00000549414 PCSK2P16519 638 aa15.7■□□□□ 0.1
CUX1-213ENST00000549414 PGDP52209 483 aa15.7■□□□□ 0.1
CUX1-213ENST00000549414 CDKL1Q00532 357 aa15.7■□□□□ 0.1
CUX1-213ENST00000549414 SLC13A2Q13183 592 aa15.7■□□□□ 0.1
CUX1-213ENST00000549414 PON2Q15165 354 aa15.7■□□□□ 0.1
CUX1-213ENST00000549414 TIGD6Q17RP2 521 aa15.7■□□□□ 0.1
CUX1-213ENST00000549414 ZNF776Q68DI1 518 aaPredicted RBP15.7■□□□□ 0.1
CUX1-213ENST00000549414 HACD2Q6Y1H2 254 aa15.7■□□□□ 0.1
CUX1-213ENST00000549414 ATG14Q6ZNE5 492 aa15.7■□□□□ 0.1
CUX1-213ENST00000549414 HS3ST5Q8IZT8 346 aa15.7■□□□□ 0.1
CUX1-213ENST00000549414 AQP11Q8NBQ7 271 aa15.7■□□□□ 0.1
CUX1-213ENST00000549414 WFDC5Q8TCV5 224 aa15.7■□□□□ 0.1
CUX1-213ENST00000549414 GEMIN6Q8WXD5 167 aaKnown RBP15.7■□□□□ 0.1
CUX1-213ENST00000549414 WDR12Q9GZL7 423 aaKnown RBP15.7■□□□□ 0.1
CUX1-213ENST00000549414 SPRTNQ9H040 489 aaPredicted RBP15.7■□□□□ 0.1
CUX1-213ENST00000549414 OR51V1Q9H2C8 321 aa15.7■□□□□ 0.1
CUX1-213ENST00000549414 WASH3PC4AMC7 463 aa15.7■□□□□ 0.1
CUX1-213ENST00000549414 CLDN25C9JDP6 229 aa15.7■□□□□ 0.1
CUX1-213ENST00000549414 MATN4O95460 622 aa15.7■□□□□ 0.1
CUX1-213ENST00000549414 TIA1P31483 386 aaKnown RBP eCLIP15.7■□□□□ 0.12e-8■■■■■ 40
CUX1-213ENST00000549414 MPIP34949 423 aa15.7■□□□□ 0.1
CUX1-213ENST00000549414 CLDN8P56748 225 aa15.7■□□□□ 0.1
CUX1-213ENST00000549414 GRIK2Q13002 908 aa15.7■□□□□ 0.1
CUX1-213ENST00000549414 LCN8Q6JVE9 175 aa15.7■□□□□ 0.1
CUX1-213ENST00000549414 ERI1Q8IV48 349 aaKnown RBP15.7■□□□□ 0.1
CUX1-213ENST00000549414 RASSF5Q8WWW0 418 aa15.7■□□□□ 0.1
CUX1-213ENST00000549414 TMEM125Q96AQ2 219 aa15.7■□□□□ 0.1
CUX1-213ENST00000549414 GPRC5BQ9NZH0 403 aa15.7■□□□□ 0.1
CUX1-213ENST00000549414 C5AR2Q9P296 337 aa15.7■□□□□ 0.1
CUX1-213ENST00000549414 USP22Q9UPT9 525 aa15.7■□□□□ 0.1
CUX1-213ENST00000549414 DNAJC13O75165 2243 aa15.7■□□□□ 0.1
CUX1-213ENST00000549414 RHPN2P1A8MT19 583 aa15.7■□□□□ 0.1
CUX1-213ENST00000549414 EFCAB9A8MZ26 197 aa15.7■□□□□ 0.1
CUX1-213ENST00000549414 FBP2O00757 339 aa15.7■□□□□ 0.1
CUX1-213ENST00000549414 UBFD1O14562 309 aaKnown RBP15.7■□□□□ 0.1
CUX1-213ENST00000549414 KMOO15229 486 aa15.7■□□□□ 0.1
CUX1-213ENST00000549414 CH25HO95992 272 aa15.7■□□□□ 0.1
CUX1-213ENST00000549414 GK3PQ14409 553 aa15.7■□□□□ 0.1
CUX1-213ENST00000549414 CXorf57Q6NSI4 855 aaKnown RBP15.7■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms