RNA–Protein interactions for RNA: ENST00000545440.5

SNHG1-223, Transcript of small nucleolar RNA host gene 1, human

TSL 2 BASIC

Gene SNHG1, Length 754 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-223	ENST00000545440	TLE1	Q04724	770 aa		7.33	□□□□□ -1.24
SNHG1-223	ENST00000545440	KLRB1	Q12918	225 aa		7.33	□□□□□ -1.24
SNHG1-223	ENST00000545440	FASTK	Q14296	549 aa	Known RBP	7.33	□□□□□ -1.24
SNHG1-223	ENST00000545440	FRG1	Q14331	258 aa	Known RBP	7.33	□□□□□ -1.24
SNHG1-223	ENST00000545440	NKAIN1	Q4KMZ8	207 aa		7.33	□□□□□ -1.24
SNHG1-223	ENST00000545440	C1orf189	Q5VU69	101 aa		7.33	□□□□□ -1.24
SNHG1-223	ENST00000545440	ICE2	Q659A1	982 aa		7.33	□□□□□ -1.24
SNHG1-223	ENST00000545440	STEAP4	Q687X5	459 aa		7.33	□□□□□ -1.24
SNHG1-223	ENST00000545440	HIBCH	Q6NVY1	386 aa	Predicted RBP	7.33	□□□□□ -1.24
SNHG1-223	ENST00000545440	MED25	Q71SY5	747 aa		7.33	□□□□□ -1.24
SNHG1-223	ENST00000545440	MRGPRE	Q86SM8	312 aa		7.33	□□□□□ -1.24
SNHG1-223	ENST00000545440	PTRH1	Q86Y79	214 aa	Known RBP	7.33	□□□□□ -1.24
SNHG1-223	ENST00000545440	HPS6	Q86YV9	775 aa		7.33	□□□□□ -1.24
SNHG1-223	ENST00000545440	KLHL7	Q8IXQ5	586 aa		7.33	□□□□□ -1.24
SNHG1-223	ENST00000545440	CPNE9	Q8IYJ1	553 aa		7.33	□□□□□ -1.24
SNHG1-223	ENST00000545440	ZNF480	Q8WV37	535 aa		7.33	□□□□□ -1.24
SNHG1-223	ENST00000545440	NACC2	Q96BF6	587 aa		7.33	□□□□□ -1.24
SNHG1-223	ENST00000545440	PKP4	Q99569	1192 aa		7.33	□□□□□ -1.24
SNHG1-223	ENST00000545440	ZFYVE21	Q9BQ24	234 aa		7.33	□□□□□ -1.24
SNHG1-223	ENST00000545440	WDR83	Q9BRX9	315 aa	Known RBP	7.33	□□□□□ -1.24
SNHG1-223	ENST00000545440	TRIM51	Q9BSJ1	452 aa		7.33	□□□□□ -1.24
SNHG1-223	ENST00000545440	DPH7	Q9BTV6	452 aa		7.33	□□□□□ -1.24
SNHG1-223	ENST00000545440	SLC25A23	Q9BV35	468 aa		7.33	□□□□□ -1.24
SNHG1-223	ENST00000545440	ING2	Q9H160	280 aa		7.33	□□□□□ -1.24
SNHG1-223	ENST00000545440	SLC26A1	Q9H2B4	701 aa		7.33	□□□□□ -1.24
SNHG1-223	ENST00000545440	WDR54	Q9H977	334 aa		7.33	□□□□□ -1.24
SNHG1-223	ENST00000545440	MLXIPL	Q9NP71	852 aa		7.33	□□□□□ -1.24
SNHG1-223	ENST00000545440	SLC6A20	Q9NP91	592 aa		7.33	□□□□□ -1.24
SNHG1-223	ENST00000545440	MRPS30	Q9NP92	439 aa	Known RBP	7.33	□□□□□ -1.24
SNHG1-223	ENST00000545440	SEMA3G	Q9NS98	782 aa		7.33	□□□□□ -1.24
SNHG1-223	ENST00000545440	IARS2	Q9NSE4	1012 aa	Known RBP	7.33	□□□□□ -1.24
SNHG1-223	ENST00000545440	CUTC	Q9NTM9	273 aa		7.33	□□□□□ -1.24
SNHG1-223	ENST00000545440	UTP6	Q9NYH9	597 aa	Known RBP	7.33	□□□□□ -1.24
SNHG1-223	ENST00000545440	TAS2R13	Q9NYV9	303 aa		7.33	□□□□□ -1.24
SNHG1-223	ENST00000545440	IFT80	Q9P2H3	777 aa	Predicted RBP	7.33	□□□□□ -1.24
SNHG1-223	ENST00000545440	TAC3	Q9UHF0	121 aa		7.33	□□□□□ -1.24
SNHG1-223	ENST00000545440	TRMT6	Q9UJA5	497 aa	Known RBP	7.33	□□□□□ -1.24
SNHG1-223	ENST00000545440	NXT1	Q9UKK6	140 aa	Known RBP	7.33	□□□□□ -1.24
SNHG1-223	ENST00000545440	G3BP2	Q9UN86	482 aa	Known RBP	7.33	□□□□□ -1.24
SNHG1-223	ENST00000545440	CHMP2B	Q9UQN3	213 aa		7.33	□□□□□ -1.24
SNHG1-223	ENST00000545440	PTRH2	Q9Y3E5	179 aa	Known RBP	7.33	□□□□□ -1.24
SNHG1-223	ENST00000545440	TEX264	Q9Y6I9	313 aa		7.33	□□□□□ -1.24
SNHG1-223	ENST00000545440	HIVEP3	Q5T1R4	2406 aa		7.33	□□□□□ -1.24
SNHG1-223	ENST00000545440	UBR5	O95071	2799 aa	Predicted RBP	7.32	□□□□□ -1.24
SNHG1-223	ENST00000545440	IGKV1-8	A0A0C4DH67	115 aa		7.32	□□□□□ -1.24
SNHG1-223	ENST00000545440		A0A0J9YVX5	310 aa		7.32	□□□□□ -1.24
SNHG1-223	ENST00000545440		E7ENX8	843 aa		7.32	□□□□□ -1.24
SNHG1-223	ENST00000545440		E7ESA3	106 aa		7.32	□□□□□ -1.24
SNHG1-223	ENST00000545440	TP73	O15350	636 aa		7.32	□□□□□ -1.24
SNHG1-223	ENST00000545440	TTI1	O43156	1089 aa		7.32	□□□□□ -1.24
SNHG1-223	ENST00000545440	ZBTB14	O43829	449 aa		7.32	□□□□□ -1.24
SNHG1-223	ENST00000545440	NRP2	O60462	931 aa		7.32	□□□□□ -1.24
SNHG1-223	ENST00000545440	IGHE	P01854	428 aa		7.32	□□□□□ -1.24
SNHG1-223	ENST00000545440	C8G	P07360	202 aa		7.32	□□□□□ -1.24
SNHG1-223	ENST00000545440	EZR	P15311	586 aa	Known RBP	7.32	□□□□□ -1.24
SNHG1-223	ENST00000545440	NR1D1	P20393	614 aa		7.32	□□□□□ -1.24
SNHG1-223	ENST00000545440	MCM3	P25205	808 aa		7.32	□□□□□ -1.24
SNHG1-223	ENST00000545440	GABRB3	P28472	473 aa		7.32	□□□□□ -1.24
SNHG1-223	ENST00000545440	IMPA1	P29218	277 aa		7.32	□□□□□ -1.24
SNHG1-223	ENST00000545440	OTX2	P32243	289 aa		7.32	□□□□□ -1.24
SNHG1-223	ENST00000545440	ELK3	P41970	407 aa		7.32	□□□□□ -1.24
SNHG1-223	ENST00000545440	ITGA8	P53708	1063 aa		7.32	□□□□□ -1.24
SNHG1-223	ENST00000545440	GFRA1	P56159	465 aa		7.32	□□□□□ -1.24
SNHG1-223	ENST00000545440	ARL4C	P56559	192 aa		7.32	□□□□□ -1.24
SNHG1-223	ENST00000545440	VSX2	P58304	361 aa	Predicted RBP	7.32	□□□□□ -1.24
SNHG1-223	ENST00000545440	ABAT	P80404	500 aa		7.32	□□□□□ -1.24
SNHG1-223	ENST00000545440	TAP2	Q03519	686 aa		7.32	□□□□□ -1.24
SNHG1-223	ENST00000545440	PRDX1	Q06830	199 aa	Known RBP	7.32	□□□□□ -1.24
SNHG1-223	ENST00000545440	CHAF1B	Q13112	559 aa		7.32	□□□□□ -1.24
SNHG1-223	ENST00000545440	ATP1A4	Q13733	1029 aa		7.32	□□□□□ -1.24
SNHG1-223	ENST00000545440	SSPN	Q14714	243 aa		7.32	□□□□□ -1.24
SNHG1-223	ENST00000545440	SLC9A5	Q14940	896 aa		7.32	□□□□□ -1.24
SNHG1-223	ENST00000545440	FAM214A	Q32MH5	1076 aa		7.32	□□□□□ -1.24
SNHG1-223	ENST00000545440	FAM209A	Q5JX71	171 aa		7.32	□□□□□ -1.24
SNHG1-223	ENST00000545440	WASHC2D	Q5SRD0	308 aa		7.32	□□□□□ -1.24
SNHG1-223	ENST00000545440	RBM20	Q5T481	1227 aa	Known RBP	7.32	□□□□□ -1.24
SNHG1-223	ENST00000545440	FAM69B	Q5VUD6	431 aa		7.32	□□□□□ -1.24
SNHG1-223	ENST00000545440	MLIP	Q5VWP3	458 aa		7.32	□□□□□ -1.24
SNHG1-223	ENST00000545440	HLA-DQA1	Q5Y7H0	255 aa		7.32	□□□□□ -1.24
SNHG1-223	ENST00000545440	ZNF425	Q6IV72	752 aa		7.32	□□□□□ -1.24
SNHG1-223	ENST00000545440	PRMT9	Q6P2P2	845 aa		7.32	□□□□□ -1.24
SNHG1-223	ENST00000545440	SUSD1	Q6UWL2	747 aa		7.32	□□□□□ -1.24
SNHG1-223	ENST00000545440	CYHR1	Q6ZMK1	362 aa		7.32	□□□□□ -1.24
SNHG1-223	ENST00000545440	TTLL10	Q6ZVT0	673 aa		7.32	□□□□□ -1.24
SNHG1-223	ENST00000545440	ASB18	Q6ZVZ8	466 aa		7.32	□□□□□ -1.24
SNHG1-223	ENST00000545440	PIWIL4	Q7Z3Z4	852 aa	Known RBP	7.32	□□□□□ -1.24
SNHG1-223	ENST00000545440	ZGRF1	Q86YA3	2104 aa		7.32	□□□□□ -1.24
SNHG1-223	ENST00000545440	IGDCC3	Q8IVU1	814 aa		7.32	□□□□□ -1.24
SNHG1-223	ENST00000545440	LRRC56	Q8IYG6	542 aa	Predicted RBP	7.32	□□□□□ -1.24
SNHG1-223	ENST00000545440	BBOF1	Q8ND07	529 aa		7.32	□□□□□ -1.24
SNHG1-223	ENST00000545440	PTER	Q96BW5	349 aa		7.32	□□□□□ -1.24
SNHG1-223	ENST00000545440	MVB12A	Q96EY5	273 aa		7.32	□□□□□ -1.24
SNHG1-223	ENST00000545440	FER1L6-AS2	Q96M78	137 aa		7.32	□□□□□ -1.24
SNHG1-223	ENST00000545440	NDN	Q99608	321 aa		7.32	□□□□□ -1.24
SNHG1-223	ENST00000545440	PLCD4	Q9BRC7	762 aa		7.32	□□□□□ -1.24
SNHG1-223	ENST00000545440	ACAT2	Q9BWD1	397 aa		7.32	□□□□□ -1.24
SNHG1-223	ENST00000545440	TRIM4	Q9C037	500 aa		7.32	□□□□□ -1.24
SNHG1-223	ENST00000545440	CLMP	Q9H6B4	373 aa		7.32	□□□□□ -1.24
SNHG1-223	ENST00000545440	PLAC1	Q9HBJ0	212 aa		7.32	□□□□□ -1.24
SNHG1-223	ENST00000545440	SLC22A11	Q9NSA0	550 aa		7.32	□□□□□ -1.24

Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms