RNA–Protein interactions for RNA: ENST00000540906.1

AP003559.1-201, humanhuman

TSL 3 BASIC

Gene AP003559.1, Length 1,831 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP003559.1-201ENST00000540906 GRIA3P42263 894 aa11.74□□□□□ -0.53
AP003559.1-201ENST00000540906 KIR3DL1P43629 444 aa11.74□□□□□ -0.53
AP003559.1-201ENST00000540906 GZMMP51124 257 aa11.74□□□□□ -0.53
AP003559.1-201ENST00000540906 HYAL2Q12891 473 aa11.74□□□□□ -0.53
AP003559.1-201ENST00000540906 FXNQ16595 210 aa11.74□□□□□ -0.53
AP003559.1-201ENST00000540906 LRRC36Q1X8D7 754 aa11.74□□□□□ -0.53
AP003559.1-201ENST00000540906 WLSQ5T9L3 541 aa11.74□□□□□ -0.53
AP003559.1-201ENST00000540906 DEPDC1Q5TB30 811 aa11.74□□□□□ -0.53
AP003559.1-201ENST00000540906 KHDRBS2Q5VWX1 349 aaKnown RBP11.74□□□□□ -0.53
AP003559.1-201ENST00000540906 FAM180BQ6P0A1 224 aa11.74□□□□□ -0.53
AP003559.1-201ENST00000540906 GPR180Q86V85 440 aa11.74□□□□□ -0.53
AP003559.1-201ENST00000540906 DHFR2Q86XF0 187 aa11.74□□□□□ -0.53
AP003559.1-201ENST00000540906 NAGSQ8N159 534 aa11.74□□□□□ -0.53
AP003559.1-201ENST00000540906 SPEM1Q8N4L4 309 aa11.74□□□□□ -0.53
AP003559.1-201ENST00000540906 RAB42Q8N4Z0 105 aa11.74□□□□□ -0.53
AP003559.1-201ENST00000540906 UCN3Q969E3 161 aa11.74□□□□□ -0.53
AP003559.1-201ENST00000540906 KLHDC7BQ96G42 594 aa11.74□□□□□ -0.53
AP003559.1-201ENST00000540906 SHDQ96IW2 340 aa11.74□□□□□ -0.53
AP003559.1-201ENST00000540906 METTL2AQ96IZ6 378 aaKnown RBP11.74□□□□□ -0.53
AP003559.1-201ENST00000540906 FCRL4Q96PJ5 515 aa11.74□□□□□ -0.53
AP003559.1-201ENST00000540906 KCTD14Q9BQ13 255 aaPredicted RBP11.74□□□□□ -0.53
AP003559.1-201ENST00000540906 DPH7Q9BTV6 452 aa11.74□□□□□ -0.53
AP003559.1-201ENST00000540906 LRRC61Q9BV99 259 aa11.74□□□□□ -0.53
AP003559.1-201ENST00000540906 RAB11FIP5Q9BXF6 653 aa11.74□□□□□ -0.53
AP003559.1-201ENST00000540906 TWSG1Q9GZX9 223 aa11.74□□□□□ -0.53
AP003559.1-201ENST00000540906 NT5DC2Q9H857 520 aa11.74□□□□□ -0.53
AP003559.1-201ENST00000540906 COPS7BQ9H9Q2 264 aaPredicted RBP11.74□□□□□ -0.53
AP003559.1-201ENST00000540906 RIMS3Q9UJD0 308 aa11.74□□□□□ -0.53
AP003559.1-201ENST00000540906 COLEC10Q9Y6Z7 277 aa11.74□□□□□ -0.53
AP003559.1-201ENST00000540906 MDC1Q14676 2089 aaKnown RBP11.74□□□□□ -0.53
AP003559.1-201ENST00000540906 ANKDD1BA6NHY2 528 aa11.73□□□□□ -0.53
AP003559.1-201ENST00000540906 ISM1B1AKI9 464 aa11.73□□□□□ -0.53
AP003559.1-201ENST00000540906 STK25O00506 426 aa11.73□□□□□ -0.53
AP003559.1-201ENST00000540906 PRMT3O60678 531 aa11.73□□□□□ -0.53
AP003559.1-201ENST00000540906 PRAMEF10O60809 474 aa11.73□□□□□ -0.53
AP003559.1-201ENST00000540906 NPPAP01160 153 aa11.73□□□□□ -0.53
AP003559.1-201ENST00000540906 IL3P08700 152 aa11.73□□□□□ -0.53
AP003559.1-201ENST00000540906 PTX3P26022 381 aaPredicted RBP11.73□□□□□ -0.53
AP003559.1-201ENST00000540906 VHLP40337 213 aa11.73□□□□□ -0.53
AP003559.1-201ENST00000540906 LSSP48449 732 aa11.73□□□□□ -0.53
AP003559.1-201ENST00000540906 TAS2R50P59544 299 aa11.73□□□□□ -0.53
AP003559.1-201ENST00000540906 UBE2IP63279 158 aaKnown RBP11.73□□□□□ -0.53
AP003559.1-201ENST00000540906 RHDQ02161 417 aa11.73□□□□□ -0.53
AP003559.1-201ENST00000540906 ZNF763Q0D2J5 394 aa11.73□□□□□ -0.53
AP003559.1-201ENST00000540906 ILF3Q12906 894 aaKnown RBP eCLIP11.73□□□□□ -0.53
AP003559.1-201ENST00000540906 FAM71E1Q6IPT2 247 aa11.73□□□□□ -0.53
AP003559.1-201ENST00000540906 ZNF425Q6IV72 752 aa11.73□□□□□ -0.53
AP003559.1-201ENST00000540906 LCN8Q6JVE9 175 aa11.73□□□□□ -0.53
AP003559.1-201ENST00000540906 PTRH1Q86Y79 214 aaKnown RBP11.73□□□□□ -0.53
AP003559.1-201ENST00000540906 GJD3Q8N144 294 aa11.73□□□□□ -0.53
AP003559.1-201ENST00000540906 PQLC1Q8N2U9 271 aa11.73□□□□□ -0.53
AP003559.1-201ENST00000540906 DTWD1Q8N5C7 304 aa11.73□□□□□ -0.53
AP003559.1-201ENST00000540906 OR8J3Q8NGG0 315 aa11.73□□□□□ -0.53
AP003559.1-201ENST00000540906 OR10A6Q8NH74 314 aa11.73□□□□□ -0.53
AP003559.1-201ENST00000540906 NELL1Q92832 810 aa11.73□□□□□ -0.53
AP003559.1-201ENST00000540906 CIDECQ96AQ7 238 aaPredicted RBP11.73□□□□□ -0.53
AP003559.1-201ENST00000540906 RSRC1Q96IZ7 334 aaKnown RBP11.73□□□□□ -0.53
AP003559.1-201ENST00000540906 ITCHQ96J02 903 aa11.73□□□□□ -0.53
AP003559.1-201ENST00000540906 ZNF570Q96NI8 536 aa11.73□□□□□ -0.53
AP003559.1-201ENST00000540906 KLHL25Q9H0H3 589 aa11.73□□□□□ -0.53
AP003559.1-201ENST00000540906 ABCG4Q9H172 646 aa11.73□□□□□ -0.53
AP003559.1-201ENST00000540906 RPF2Q9H7B2 306 aaKnown RBP11.73□□□□□ -0.53
AP003559.1-201ENST00000540906 EVA1BQ9NVM1 165 aa11.73□□□□□ -0.53
AP003559.1-201ENST00000540906 TRBC2A0A5B9 178 aa11.72□□□□□ -0.53
AP003559.1-201ENST00000540906 TOR1BO14657 336 aa11.72□□□□□ -0.53
AP003559.1-201ENST00000540906 NVLO15381 856 aaKnown RBP11.72□□□□□ -0.53
AP003559.1-201ENST00000540906 NDUFS4O43181 175 aa11.72□□□□□ -0.53
AP003559.1-201ENST00000540906 TMPRSS11DO60235 418 aa11.72□□□□□ -0.53
AP003559.1-201ENST00000540906 CPSF4O95639 269 aaKnown RBP11.72□□□□□ -0.53
AP003559.1-201ENST00000540906 SERPIND1P05546 499 aa11.72□□□□□ -0.53
AP003559.1-201ENST00000540906 FURINP09958 794 aa11.72□□□□□ -0.53
AP003559.1-201ENST00000540906 CD27P26842 260 aa11.72□□□□□ -0.53
AP003559.1-201ENST00000540906 SHMT2P34897 504 aa11.72□□□□□ -0.53
AP003559.1-201ENST00000540906 PPP1CAP62136 330 aa11.72□□□□□ -0.53
AP003559.1-201ENST00000540906 BNIP2Q12982 314 aa11.72□□□□□ -0.53
AP003559.1-201ENST00000540906 ZIC1Q15915 447 aa11.72□□□□□ -0.53
AP003559.1-201ENST00000540906 C10orf62Q5T681 223 aaPredicted RBP11.72□□□□□ -0.53
AP003559.1-201ENST00000540906 HMBOX1Q6NT76 420 aa11.72□□□□□ -0.53
AP003559.1-201ENST00000540906 TAF8Q7Z7C8 310 aa11.72□□□□□ -0.53
AP003559.1-201ENST00000540906 TMEM102Q8N9M5 508 aaPredicted RBP11.72□□□□□ -0.53
AP003559.1-201ENST00000540906 ZNF548Q8NEK5 533 aaPredicted RBP11.72□□□□□ -0.53
AP003559.1-201ENST00000540906 OR8J2Q8NGG1 315 aa11.72□□□□□ -0.53
AP003559.1-201ENST00000540906 SLC37A2Q8TED4 501 aa11.72□□□□□ -0.53
AP003559.1-201ENST00000540906 CANT1Q8WVQ1 401 aa11.72□□□□□ -0.53
AP003559.1-201ENST00000540906 ZUFSPQ96AP4 578 aa11.72□□□□□ -0.53
AP003559.1-201ENST00000540906 COQ8BQ96D53 544 aa11.72□□□□□ -0.53
AP003559.1-201ENST00000540906 OR2A14Q96R47 310 aa11.72□□□□□ -0.53
AP003559.1-201ENST00000540906 TBCDQ9BTW9 1192 aa11.72□□□□□ -0.53
AP003559.1-201ENST00000540906 DUSP26Q9BV47 211 aa11.72□□□□□ -0.53
AP003559.1-201ENST00000540906 ACTR3BQ9P1U1 418 aa11.72□□□□□ -0.53
AP003559.1-201ENST00000540906 CPNE7Q9UBL6 633 aa11.72□□□□□ -0.53
AP003559.1-201ENST00000540906 ATP6V1HQ9UI12 483 aa11.72□□□□□ -0.53
AP003559.1-201ENST00000540906 MCM8Q9UJA3 840 aa11.72□□□□□ -0.53
AP003559.1-201ENST00000540906 AK5Q9Y6K8 562 aa11.72□□□□□ -0.53
AP003559.1-201ENST00000540906 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa11.72□□□□□ -0.53
AP003559.1-201ENST00000540906 NDUFS2O75306 463 aa11.72□□□□□ -0.53
AP003559.1-201ENST00000540906 POLR2CP19387 275 aaPredicted RBP11.72□□□□□ -0.53
AP003559.1-201ENST00000540906 CXCR2P25025 360 aa11.72□□□□□ -0.53
AP003559.1-201ENST00000540906 HTR1EP28566 365 aa11.72□□□□□ -0.53
AP003559.1-201ENST00000540906 RPL6Q02878 288 aaKnown RBP11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms