RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, human

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-223	ENST00000533079	NAV3	Q8IVL0	2385 aa		11.68	□□□□□ -0.54
CAPN1-223	ENST00000533079	MYO1C	O00159	1063 aa		11.68	□□□□□ -0.54
CAPN1-223	ENST00000533079	P2RX6	O15547	441 aa		11.68	□□□□□ -0.54
CAPN1-223	ENST00000533079	MATN4	O95460	622 aa		11.68	□□□□□ -0.54
CAPN1-223	ENST00000533079	TFEB	P19484	476 aa		11.68	□□□□□ -0.54
CAPN1-223	ENST00000533079	IL10	P22301	178 aa		11.68	□□□□□ -0.54
CAPN1-223	ENST00000533079	RPS3	P23396	243 aa	Known RBP eCLIP	11.68	□□□□□ -0.54	1e-12	■□□□□ 9.8
CAPN1-223	ENST00000533079	TRHR	P34981	398 aa	Predicted RBP	11.68	□□□□□ -0.54
CAPN1-223	ENST00000533079	PEX19	P40855	299 aa		11.68	□□□□□ -0.54
CAPN1-223	ENST00000533079	SEMA3A	Q14563	771 aa		11.68	□□□□□ -0.54
CAPN1-223	ENST00000533079	USP10	Q14694	798 aa	Known RBP	11.68	□□□□□ -0.54
CAPN1-223	ENST00000533079	ANKRD20A4	Q4UJ75	823 aa		11.68	□□□□□ -0.54
CAPN1-223	ENST00000533079	RNFT1	Q5M7Z0	435 aa		11.68	□□□□□ -0.54
CAPN1-223	ENST00000533079	BEND6	Q5SZJ8	279 aa	Predicted RBP	11.68	□□□□□ -0.54
CAPN1-223	ENST00000533079	C8orf74	Q6P047	294 aa		11.68	□□□□□ -0.54
CAPN1-223	ENST00000533079	IFT20	Q8IY31	132 aa		11.68	□□□□□ -0.54
CAPN1-223	ENST00000533079	OR9A4	Q8NGU2	314 aa		11.68	□□□□□ -0.54
CAPN1-223	ENST00000533079	OR51Q1	Q8NH59	317 aa		11.68	□□□□□ -0.54
CAPN1-223	ENST00000533079	C16orf52	Q8NHV5	167 aa		11.68	□□□□□ -0.54
CAPN1-223	ENST00000533079	RMND5B	Q96G75	393 aa	Predicted RBP	11.68	□□□□□ -0.54
CAPN1-223	ENST00000533079	OR1F2P	Q96R84	312 aa		11.68	□□□□□ -0.54
CAPN1-223	ENST00000533079	P2RY12	Q9H244	342 aa		11.68	□□□□□ -0.54
CAPN1-223	ENST00000533079	SYNPO2L	Q9H987	977 aa		11.68	□□□□□ -0.54
CAPN1-223	ENST00000533079	TAC3	Q9UHF0	121 aa		11.68	□□□□□ -0.54
CAPN1-223	ENST00000533079	RUVBL2	Q9Y230	463 aa	Known RBP	11.68	□□□□□ -0.54
CAPN1-223	ENST00000533079		A0A1B0GTH9	108 aa		11.67	□□□□□ -0.54
CAPN1-223	ENST00000533079	KRT87P	A6NCN2	255 aa		11.67	□□□□□ -0.54
CAPN1-223	ENST00000533079	FAM187A	A6NFU0	413 aa		11.67	□□□□□ -0.54
CAPN1-223	ENST00000533079	MAGEB17	A8MXT2	336 aa		11.67	□□□□□ -0.54
CAPN1-223	ENST00000533079	KLRC4-KLRK1	H3BQV0	150 aa		11.67	□□□□□ -0.54
CAPN1-223	ENST00000533079	NDC80	O14777	642 aa		11.67	□□□□□ -0.54
CAPN1-223	ENST00000533079	MAN1A2	O60476	641 aa		11.67	□□□□□ -0.54
CAPN1-223	ENST00000533079	CTAG2	O75638	210 aa		11.67	□□□□□ -0.54
CAPN1-223	ENST00000533079	DNASE1	P24855	282 aa		11.67	□□□□□ -0.54
CAPN1-223	ENST00000533079	ADRA1D	P25100	572 aa		11.67	□□□□□ -0.54
CAPN1-223	ENST00000533079	BCL6	P41182	706 aa		11.67	□□□□□ -0.54
CAPN1-223	ENST00000533079	SLC26A5	P58743	744 aa		11.67	□□□□□ -0.54
CAPN1-223	ENST00000533079	VSNL1	P62760	191 aa		11.67	□□□□□ -0.54
CAPN1-223	ENST00000533079	YBX1	P67809	324 aa	Known RBP	11.67	□□□□□ -0.54
CAPN1-223	ENST00000533079	MPP1	Q00013	466 aa		11.67	□□□□□ -0.54
CAPN1-223	ENST00000533079	DHX34	Q14147	1143 aa	Known RBP	11.67	□□□□□ -0.54
CAPN1-223	ENST00000533079	GBX1	Q14549	363 aa		11.67	□□□□□ -0.54
CAPN1-223	ENST00000533079	ABRAXAS2	Q15018	415 aa		11.67	□□□□□ -0.54
CAPN1-223	ENST00000533079	CEBPE	Q15744	281 aa		11.67	□□□□□ -0.54
CAPN1-223	ENST00000533079	SFT2D3	Q587I9	215 aa		11.67	□□□□□ -0.54
CAPN1-223	ENST00000533079	EEF1AKMT2	Q5JPI9	291 aa	Known RBP	11.67	□□□□□ -0.54
CAPN1-223	ENST00000533079	SUSD1	Q6UWL2	747 aa		11.67	□□□□□ -0.54
CAPN1-223	ENST00000533079	CAMKMT	Q7Z624	323 aa		11.67	□□□□□ -0.54
CAPN1-223	ENST00000533079	RPS19BP1	Q86WX3	136 aa	Known RBP	11.67	□□□□□ -0.54
CAPN1-223	ENST00000533079	FAM71D	Q8N9W8	422 aa		11.67	□□□□□ -0.54
CAPN1-223	ENST00000533079	OR52K1	Q8NGK4	314 aa		11.67	□□□□□ -0.54
CAPN1-223	ENST00000533079	ELP5	Q8TE02	316 aa		11.67	□□□□□ -0.54
CAPN1-223	ENST00000533079	NRGN	Q92686	78 aa		11.67	□□□□□ -0.54
CAPN1-223	ENST00000533079	SLCO2A1	Q92959	643 aa		11.67	□□□□□ -0.54
CAPN1-223	ENST00000533079	MBD6	Q96DN6	1003 aa		11.67	□□□□□ -0.54
CAPN1-223	ENST00000533079	SEC16B	Q96JE7	1060 aa		11.67	□□□□□ -0.54
CAPN1-223	ENST00000533079	KRT12	Q99456	494 aa		11.67	□□□□□ -0.54
CAPN1-223	ENST00000533079	FAM118B	Q9BPY3	351 aa		11.67	□□□□□ -0.54
CAPN1-223	ENST00000533079	FAM129A	Q9BZQ8	928 aa		11.67	□□□□□ -0.54
CAPN1-223	ENST00000533079	SLC2A6	Q9UGQ3	507 aa		11.67	□□□□□ -0.54
CAPN1-223	ENST00000533079	DMGDH	Q9UI17	866 aa	Known RBP	11.67	□□□□□ -0.54
CAPN1-223	ENST00000533079	L3MBTL1	Q9Y468	752 aa		11.67	□□□□□ -0.54
CAPN1-223	ENST00000533079	TCAF1	Q9Y4C2	921 aa		11.67	□□□□□ -0.54
CAPN1-223	ENST00000533079	VPS13C	Q709C8	3753 aa		11.67	□□□□□ -0.54
CAPN1-223	ENST00000533079	KCNE1B	A0A087WTH5	132 aa		11.66	□□□□□ -0.54
CAPN1-223	ENST00000533079		H3BMM5	538 aa		11.66	□□□□□ -0.54
CAPN1-223	ENST00000533079	FCHO1	O14526	889 aa		11.66	□□□□□ -0.54
CAPN1-223	ENST00000533079	HAT1	O14929	419 aa		11.66	□□□□□ -0.54
CAPN1-223	ENST00000533079	ZNHIT1	O43257	154 aa		11.66	□□□□□ -0.54
CAPN1-223	ENST00000533079	PSIP1	O75475	530 aa	Known RBP	11.66	□□□□□ -0.54
CAPN1-223	ENST00000533079	CAT	P04040	527 aa	Known RBP	11.66	□□□□□ -0.54
CAPN1-223	ENST00000533079	HRH2	P25021	359 aa		11.66	□□□□□ -0.54
CAPN1-223	ENST00000533079	TPP2	P29144	1249 aa	Predicted RBP	11.66	□□□□□ -0.54
CAPN1-223	ENST00000533079	FNTA	P49354	379 aa		11.66	□□□□□ -0.54
CAPN1-223	ENST00000533079	MEOX1	P50221	254 aa		11.66	□□□□□ -0.54
CAPN1-223	ENST00000533079	HLCS	P50747	726 aa		11.66	□□□□□ -0.54
CAPN1-223	ENST00000533079	PNLIPRP1	P54315	467 aa		11.66	□□□□□ -0.54
CAPN1-223	ENST00000533079	RPS15A	P62244	130 aa	Known RBP	11.66	□□□□□ -0.54
CAPN1-223	ENST00000533079	RHAG	Q02094	409 aa		11.66	□□□□□ -0.54
CAPN1-223	ENST00000533079	ACTN3	Q08043	901 aa	Predicted RBP	11.66	□□□□□ -0.54
CAPN1-223	ENST00000533079	CUL1	Q13616	776 aa		11.66	□□□□□ -0.54
CAPN1-223	ENST00000533079	SIX1	Q15475	284 aa	Predicted RBP	11.66	□□□□□ -0.54
CAPN1-223	ENST00000533079	NSDHL	Q15738	373 aa		11.66	□□□□□ -0.54
CAPN1-223	ENST00000533079	CMPK2	Q5EBM0	449 aa		11.66	□□□□□ -0.54
CAPN1-223	ENST00000533079	TMEM214	Q6NUQ4	689 aa	Known RBP	11.66	□□□□□ -0.54
CAPN1-223	ENST00000533079	PAOX	Q6QHF9	649 aa		11.66	□□□□□ -0.54
CAPN1-223	ENST00000533079	TAOK1	Q7L7X3	1001 aa		11.66	□□□□□ -0.54
CAPN1-223	ENST00000533079	ADCK2	Q7Z695	626 aa		11.66	□□□□□ -0.54
CAPN1-223	ENST00000533079	ARMC10	Q8N2F6	343 aa		11.66	□□□□□ -0.54
CAPN1-223	ENST00000533079	AMER2	Q8N7J2	671 aa		11.66	□□□□□ -0.54
CAPN1-223	ENST00000533079	PRELID2	Q8N945	189 aa		11.66	□□□□□ -0.54
CAPN1-223	ENST00000533079	ZFP62	Q8NB50	900 aa	Predicted RBP	11.66	□□□□□ -0.54
CAPN1-223	ENST00000533079	PLPP5	Q8NEB5	264 aa		11.66	□□□□□ -0.54
CAPN1-223	ENST00000533079	THAP11	Q96EK4	314 aa		11.66	□□□□□ -0.54
CAPN1-223	ENST00000533079	SARG	Q9BW04	601 aa		11.66	□□□□□ -0.54
CAPN1-223	ENST00000533079	POLDIP3	Q9BY77	421 aa	Known RBP	11.66	□□□□□ -0.54
CAPN1-223	ENST00000533079	UCK2	Q9BZX2	261 aa		11.66	□□□□□ -0.54
CAPN1-223	ENST00000533079	SLC6A16	Q9GZN6	736 aa		11.66	□□□□□ -0.54
CAPN1-223	ENST00000533079	GSX1	Q9H4S2	264 aa	Predicted RBP	11.66	□□□□□ -0.54
CAPN1-223	ENST00000533079	CDCP1	Q9H5V8	836 aa		11.66	□□□□□ -0.54

Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms