RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 VTCN1Q7Z7D3 282 aa12.26□□□□□ -0.45
USP53-209ENST00000514665 ZFAND4Q86XD8 727 aa12.26□□□□□ -0.45
USP53-209ENST00000514665 WFIKKN2Q8TEU8 576 aa12.26□□□□□ -0.45
USP53-209ENST00000514665 KCTD7Q96MP8 289 aa12.26□□□□□ -0.45
USP53-209ENST00000514665 KLHL31Q9H511 634 aa12.26□□□□□ -0.45
USP53-209ENST00000514665 DIABLOQ9NR28 239 aa12.26□□□□□ -0.45
USP53-209ENST00000514665 TAS2R7Q9NYW3 318 aa12.26□□□□□ -0.45
USP53-209ENST00000514665 PHF11Q9UIL8 331 aa12.26□□□□□ -0.45
USP53-209ENST00000514665 CDRT1O95170 752 aa12.26□□□□□ -0.45
USP53-209ENST00000514665 BNC1Q01954 994 aa12.26□□□□□ -0.45
USP53-209ENST00000514665 CSTF1Q05048 431 aaKnown RBP12.26□□□□□ -0.45
USP53-209ENST00000514665 PDGFRLQ15198 375 aa12.26□□□□□ -0.45
USP53-209ENST00000514665 ATG9BQ674R7 924 aa12.26□□□□□ -0.45
USP53-209ENST00000514665 TRIM73Q86UV7 250 aa12.26□□□□□ -0.45
USP53-209ENST00000514665 ARHGAP12Q8IWW6 846 aa12.26□□□□□ -0.45
USP53-209ENST00000514665 APCDD1Q8J025 514 aa12.26□□□□□ -0.45
USP53-209ENST00000514665 SCAIQ8N9R8 606 aa12.26□□□□□ -0.45
USP53-209ENST00000514665 ZNF420Q8TAQ5 688 aaPredicted RBP12.26□□□□□ -0.45
USP53-209ENST00000514665 PGAP3Q96FM1 320 aaPredicted RBP12.26□□□□□ -0.45
USP53-209ENST00000514665 RIPOR3Q96MK2 946 aa12.26□□□□□ -0.45
USP53-209ENST00000514665 C17orf62Q9BQA9 187 aa12.26□□□□□ -0.45
USP53-209ENST00000514665 POLE4Q9NR33 117 aa12.26□□□□□ -0.45
USP53-209ENST00000514665 SDR39U1Q9NRG7 319 aaPredicted RBP12.26□□□□□ -0.45
USP53-209ENST00000514665 A0A075B6Q4 140 aa12.26□□□□□ -0.45
USP53-209ENST00000514665 MBLAC1A4D2B0 266 aaPredicted RBP12.26□□□□□ -0.45
USP53-209ENST00000514665 H0YAE9 185 aa12.26□□□□□ -0.45
USP53-209ENST00000514665 HSD17B1P14061 328 aa12.26□□□□□ -0.45
USP53-209ENST00000514665 PIK3CBP42338 1070 aa12.26□□□□□ -0.45
USP53-209ENST00000514665 RAB15P59190 212 aa12.26□□□□□ -0.45
USP53-209ENST00000514665 DOC2AQ14183 400 aa12.26□□□□□ -0.45
USP53-209ENST00000514665 LETMD1Q6P1Q0 360 aa12.26□□□□□ -0.45
USP53-209ENST00000514665 ANKFN1Q8N957 763 aa12.26□□□□□ -0.45
USP53-209ENST00000514665 OR9A1PQ8NGU1 263 aa12.26□□□□□ -0.45
USP53-209ENST00000514665 CAMK1GQ96NX5 476 aa12.26□□□□□ -0.45
USP53-209ENST00000514665 IL17FQ96PD4 163 aa12.26□□□□□ -0.45
USP53-209ENST00000514665 ELAC1Q9H777 363 aaKnown RBP12.26□□□□□ -0.45
USP53-209ENST00000514665 ZDHHC4Q9NPG8 344 aa12.26□□□□□ -0.45
USP53-209ENST00000514665 COL2A1P02458 1487 aaPredicted RBP12.25□□□□□ -0.45
USP53-209ENST00000514665 A0A096LPI6 279 aa12.25□□□□□ -0.45
USP53-209ENST00000514665 PRAMEF33A0A0G2JMD5 474 aa12.25□□□□□ -0.45
USP53-209ENST00000514665 SLC35F4A4IF30 521 aa12.25□□□□□ -0.45
USP53-209ENST00000514665 FAM170BA6NMN3 283 aa12.25□□□□□ -0.45
USP53-209ENST00000514665 LSM1O15116 133 aaKnown RBP12.25□□□□□ -0.45
USP53-209ENST00000514665 PRAMEF10O60809 474 aa12.25□□□□□ -0.45
USP53-209ENST00000514665 OAZ2O95190 189 aa12.25□□□□□ -0.45
USP53-209ENST00000514665 PRAMEF12O95522 483 aa12.25□□□□□ -0.45
USP53-209ENST00000514665 HLCSP50747 726 aa12.25□□□□□ -0.45
USP53-209ENST00000514665 CDKL1Q00532 357 aa12.25□□□□□ -0.45
USP53-209ENST00000514665 TUBA3CQ13748 450 aa12.25□□□□□ -0.45
USP53-209ENST00000514665 PON2Q15165 354 aa12.25□□□□□ -0.45
USP53-209ENST00000514665 FAAH2Q6GMR7 532 aa12.25□□□□□ -0.45
USP53-209ENST00000514665 KDELC1Q6UW63 502 aa12.25□□□□□ -0.45
USP53-209ENST00000514665 ZNF534Q76KX8 674 aa12.25□□□□□ -0.45
USP53-209ENST00000514665 TMC8Q8IU68 726 aa12.25□□□□□ -0.45
USP53-209ENST00000514665 TIGARQ9NQ88 270 aa12.25□□□□□ -0.45
USP53-209ENST00000514665 B3GALT2O43825 422 aa12.25□□□□□ -0.45
USP53-209ENST00000514665 ORC5O43913 435 aa12.25□□□□□ -0.45
USP53-209ENST00000514665 FGF18O76093 207 aa12.25□□□□□ -0.45
USP53-209ENST00000514665 GNRH1P01148 92 aa12.25□□□□□ -0.45
USP53-209ENST00000514665 CSF2P04141 144 aa12.25□□□□□ -0.45
USP53-209ENST00000514665 CLK3P49761 638 aaKnown RBP12.25□□□□□ -0.45
USP53-209ENST00000514665 GRIK2Q13002 908 aa12.25□□□□□ -0.45
USP53-209ENST00000514665 LCN8Q6JVE9 175 aa12.25□□□□□ -0.45
USP53-209ENST00000514665 REEP3Q6NUK4 255 aa12.25□□□□□ -0.45
USP53-209ENST00000514665 OR10H5Q8NGA6 315 aa12.25□□□□□ -0.45
USP53-209ENST00000514665 GRHL3Q8TE85 626 aa12.25□□□□□ -0.45
USP53-209ENST00000514665 MYRFLQ96LU7 910 aa12.25□□□□□ -0.45
USP53-209ENST00000514665 C3orf30Q96M34 536 aa12.25□□□□□ -0.45
USP53-209ENST00000514665 XKR8Q9H6D3 395 aa12.25□□□□□ -0.45
USP53-209ENST00000514665 ACSL6Q9UKU0 697 aa12.25□□□□□ -0.45
USP53-209ENST00000514665 OARD1Q9Y530 152 aa12.25□□□□□ -0.45
USP53-209ENST00000514665 CACNA1CQ13936 2221 aa12.25□□□□□ -0.45
USP53-209ENST00000514665 DUXAA6NLW8 204 aa12.25□□□□□ -0.45
USP53-209ENST00000514665 PAK4O96013 591 aaPredicted RBP12.25□□□□□ -0.45
USP53-209ENST00000514665 CKMT1AP12532 417 aa12.25□□□□□ -0.45
USP53-209ENST00000514665 AHCYP23526 432 aa12.25□□□□□ -0.45
USP53-209ENST00000514665 SPATS1Q496A3 300 aa12.25□□□□□ -0.45
USP53-209ENST00000514665 CLECL1Q8IZS7 167 aa12.25□□□□□ -0.45
USP53-209ENST00000514665 TSEN15Q8WW01 171 aaKnown RBP12.25□□□□□ -0.45
USP53-209ENST00000514665 IRF7Q92985 503 aa12.25□□□□□ -0.45
USP53-209ENST00000514665 FAM129BQ96TA1 746 aa12.25□□□□□ -0.45
USP53-209ENST00000514665 TMED9Q9BVK6 235 aa12.25□□□□□ -0.45
USP53-209ENST00000514665 TSSK6Q9BXA6 273 aa12.25□□□□□ -0.45
USP53-209ENST00000514665 REEP4Q9H6H4 257 aa12.25□□□□□ -0.45
USP53-209ENST00000514665 RTCAO00442 366 aaKnown RBP12.24□□□□□ -0.45
USP53-209ENST00000514665 MITFO75030 526 aaPredicted RBP12.24□□□□□ -0.45
USP53-209ENST00000514665 DDX6P26196 483 aaKnown RBP eCLIP12.24□□□□□ -0.45
USP53-209ENST00000514665 ACRV1P26436 265 aa12.24□□□□□ -0.45
USP53-209ENST00000514665 BTN3A2P78410 334 aa12.24□□□□□ -0.45
USP53-209ENST00000514665 MLLT1Q03111 559 aaPredicted RBP12.24□□□□□ -0.45
USP53-209ENST00000514665 TNFAIP8L3Q5GJ75 292 aa12.24□□□□□ -0.45
USP53-209ENST00000514665 SLC35F1Q5T1Q4 408 aa12.24□□□□□ -0.45
USP53-209ENST00000514665 HSDL2Q6YN16 418 aa12.24□□□□□ -0.45
USP53-209ENST00000514665 PEG10Q86TG7 708 aaKnown RBP12.24□□□□□ -0.45
USP53-209ENST00000514665 DTWD1Q8N5C7 304 aa12.24□□□□□ -0.45
USP53-209ENST00000514665 OR4E2Q8NGC2 313 aa12.24□□□□□ -0.45
USP53-209ENST00000514665 TNFAIP8L1Q8WVP5 186 aa12.24□□□□□ -0.45
USP53-209ENST00000514665 L3HYPDHQ96EM0 354 aa12.24□□□□□ -0.45
USP53-209ENST00000514665 RDH12Q96NR8 316 aa12.24□□□□□ -0.45
USP53-209ENST00000514665 MAPKAP1Q9BPZ7 522 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms