RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 PAIP2Q9BPZ3 127 aaKnown RBP1.86□□□□□ -2.11
NUP54-208ENST00000508604 UNC45AQ9H3U1 944 aa1.86□□□□□ -2.11
NUP54-208ENST00000508604 IL1RAPQ9NPH3 570 aa1.86□□□□□ -2.11
NUP54-208ENST00000508604 BLOC1S4Q9NUP1 217 aa1.86□□□□□ -2.11
NUP54-208ENST00000508604 POLLQ9UGP5 575 aa1.86□□□□□ -2.11
NUP54-208ENST00000508604 IL36AQ9UHA7 158 aa1.86□□□□□ -2.11
NUP54-208ENST00000508604 WBP11Q9Y2W2 641 aaKnown RBP1.86□□□□□ -2.11
NUP54-208ENST00000508604 UNC13AQ9UPW8 1703 aa1.86□□□□□ -2.11
NUP54-208ENST00000508604 A0A087X0M5 115 aa1.85□□□□□ -2.11
NUP54-208ENST00000508604 GPR75-ASB3A0A0A6YYF3 556 aa1.85□□□□□ -2.11
NUP54-208ENST00000508604 A0A1B0GX30 115 aa1.85□□□□□ -2.11
NUP54-208ENST00000508604 OR2A25A4D2G3 310 aa1.85□□□□□ -2.11
NUP54-208ENST00000508604 PGPEP1LA6NFU8 196 aa1.85□□□□□ -2.11
NUP54-208ENST00000508604 NKX6-3A6NJ46 265 aa1.85□□□□□ -2.11
NUP54-208ENST00000508604 PTGES3LE9PB15 166 aa1.85□□□□□ -2.11
NUP54-208ENST00000508604 K7EQG2 157 aa1.85□□□□□ -2.11
NUP54-208ENST00000508604 APBB3O95704 486 aa1.85□□□□□ -2.11
NUP54-208ENST00000508604 GIG44P09565 113 aaPredicted RBP1.85□□□□□ -2.11
NUP54-208ENST00000508604 NEFHP12036 1026 aa1.85□□□□□ -2.11
NUP54-208ENST00000508604 CD1DP15813 335 aa1.85□□□□□ -2.11
NUP54-208ENST00000508604 TM4SF1P30408 202 aa1.85□□□□□ -2.11
NUP54-208ENST00000508604 KRTAP10-10P60014 251 aa1.85□□□□□ -2.11
NUP54-208ENST00000508604 KRT32Q14532 448 aa1.85□□□□□ -2.11
NUP54-208ENST00000508604 IRF3Q14653 427 aa1.85□□□□□ -2.11
NUP54-208ENST00000508604 CDC37Q16543 378 aaPredicted RBP1.85□□□□□ -2.11
NUP54-208ENST00000508604 RAB41Q5JT25 222 aa1.85□□□□□ -2.11
NUP54-208ENST00000508604 CCDC30Q5VVM6 783 aa1.85□□□□□ -2.11
NUP54-208ENST00000508604 CYB5D1Q6P9G0 228 aa1.85□□□□□ -2.11
NUP54-208ENST00000508604 OR5M9Q8NGP3 310 aa1.85□□□□□ -2.11
NUP54-208ENST00000508604 PTPMT1Q8WUK0 201 aaPredicted RBP1.85□□□□□ -2.11
NUP54-208ENST00000508604 KLHL5Q96PQ7 755 aa1.85□□□□□ -2.11
NUP54-208ENST00000508604 CHCHD6Q9BRQ6 235 aa1.85□□□□□ -2.11
NUP54-208ENST00000508604 DEFB126Q9BYW3 111 aa1.85□□□□□ -2.11
NUP54-208ENST00000508604 RPS6KB2Q9UBS0 482 aa1.85□□□□□ -2.11
NUP54-208ENST00000508604 CPSF3Q9UKF6 684 aaKnown RBP1.85□□□□□ -2.11
NUP54-208ENST00000508604 PILRAQ9UKJ1 303 aa1.85□□□□□ -2.11
NUP54-208ENST00000508604 DOK2O60496 412 aa1.84□□□□□ -2.11
NUP54-208ENST00000508604 SRPX2O60687 465 aaPredicted RBP1.84□□□□□ -2.11
NUP54-208ENST00000508604 RPS6KA5O75582 802 aa1.84□□□□□ -2.11
NUP54-208ENST00000508604 SAGP10523 405 aaPredicted RBP1.84□□□□□ -2.11
NUP54-208ENST00000508604 PFKFB1P16118 471 aa1.84□□□□□ -2.11
NUP54-208ENST00000508604 CD27P26842 260 aa1.84□□□□□ -2.11
NUP54-208ENST00000508604 FCGR2BP31994 310 aaPredicted RBP1.84□□□□□ -2.11
NUP54-208ENST00000508604 FCGR2CP31995 323 aa1.84□□□□□ -2.11
NUP54-208ENST00000508604 SPRP35270 261 aaPredicted RBP1.84□□□□□ -2.11
NUP54-208ENST00000508604 PEX19P40855 299 aa1.84□□□□□ -2.11
NUP54-208ENST00000508604 CDH13P55290 713 aa1.84□□□□□ -2.11
NUP54-208ENST00000508604 OR1D5P58170 312 aa1.84□□□□□ -2.11
NUP54-208ENST00000508604 ERVPABLB-1P60509 514 aa1.84□□□□□ -2.11
NUP54-208ENST00000508604 PRKG2Q13237 762 aa1.84□□□□□ -2.11
NUP54-208ENST00000508604 LTB4RQ15722 352 aa1.84□□□□□ -2.11
NUP54-208ENST00000508604 HSP90B2PQ58FF3 399 aa1.84□□□□□ -2.11
NUP54-208ENST00000508604 HYIQ5T013 277 aa1.84□□□□□ -2.11
NUP54-208ENST00000508604 CLEC4GQ6UXB4 293 aa1.84□□□□□ -2.11
NUP54-208ENST00000508604 MCM10Q7L590 875 aa1.84□□□□□ -2.11
NUP54-208ENST00000508604 ENTHD1Q8IYW4 607 aa1.84□□□□□ -2.11
NUP54-208ENST00000508604 CARNMT1Q8N4J0 409 aa1.84□□□□□ -2.11
NUP54-208ENST00000508604 ZNF525Q8N782 197 aa1.84□□□□□ -2.11
NUP54-208ENST00000508604 HDAC2Q92769 488 aaKnown RBP1.84□□□□□ -2.11
NUP54-208ENST00000508604 CASP10Q92851 521 aa1.84□□□□□ -2.11
NUP54-208ENST00000508604 NXNL1Q96CM4 212 aa1.84□□□□□ -2.11
NUP54-208ENST00000508604 MAGEB18Q96M61 343 aa1.84□□□□□ -2.11
NUP54-208ENST00000508604 SDCBP2Q9H190 292 aa1.84□□□□□ -2.11
NUP54-208ENST00000508604 RNF121Q9H920 327 aa1.84□□□□□ -2.11
NUP54-208ENST00000508604 KCNK13Q9HB14 408 aa1.84□□□□□ -2.11
NUP54-208ENST00000508604 MYNNQ9NPC7 610 aa1.84□□□□□ -2.11
NUP54-208ENST00000508604 GSN-AS1Q9NRJ2 163 aa1.84□□□□□ -2.11
NUP54-208ENST00000508604 VNN3Q9NY84 501 aa1.84□□□□□ -2.11
NUP54-208ENST00000508604 Q9UF83 564 aa1.84□□□□□ -2.11
NUP54-208ENST00000508604 MGAT4AQ9UM21 535 aa1.84□□□□□ -2.11
NUP54-208ENST00000508604 RPS6KL1Q9Y6S9 549 aa1.84□□□□□ -2.11
NUP54-208ENST00000508604 SYNRGQ9UMZ2 1314 aa1.84□□□□□ -2.12
NUP54-208ENST00000508604 VGLL3A8MV65 326 aa1.83□□□□□ -2.12
NUP54-208ENST00000508604 TCP10L2B9ZVM9 353 aa1.83□□□□□ -2.12
NUP54-208ENST00000508604 F5H0A9 414 aaPredicted RBP1.83□□□□□ -2.12
NUP54-208ENST00000508604 PTP4A3O75365 173 aa1.83□□□□□ -2.12
NUP54-208ENST00000508604 SAP30O75446 220 aa1.83□□□□□ -2.12
NUP54-208ENST00000508604 LYPD3O95274 346 aa1.83□□□□□ -2.12
NUP54-208ENST00000508604 PIGRP01833 764 aa1.83□□□□□ -2.12
NUP54-208ENST00000508604 RAB40ALP0C0E4 278 aa1.83□□□□□ -2.12
NUP54-208ENST00000508604 CCDC172P0C7W6 258 aa1.83□□□□□ -2.12
NUP54-208ENST00000508604 TRIM21P19474 475 aaKnown RBP1.83□□□□□ -2.12
NUP54-208ENST00000508604 ALDH1B1P30837 517 aa1.83□□□□□ -2.12
NUP54-208ENST00000508604 SFTPDP35247 375 aa1.83□□□□□ -2.12
NUP54-208ENST00000508604 COPB2P35606 906 aa1.83□□□□□ -2.12
NUP54-208ENST00000508604 PSMB10P40306 273 aa1.83□□□□□ -2.12
NUP54-208ENST00000508604 EIF5P55010 431 aaKnown RBP1.83□□□□□ -2.12
NUP54-208ENST00000508604 WNT4P56705 351 aa1.83□□□□□ -2.12
NUP54-208ENST00000508604 FAAH2Q6GMR7 532 aa1.83□□□□□ -2.12
NUP54-208ENST00000508604 OR4C11Q6IEV9 310 aa1.83□□□□□ -2.12
NUP54-208ENST00000508604 RASGEF1AQ8N9B8 481 aa1.83□□□□□ -2.12
NUP54-208ENST00000508604 MNS1Q8NEH6 495 aa1.83□□□□□ -2.12
NUP54-208ENST00000508604 ZNF721Q8TF20 911 aa1.83□□□□□ -2.12
NUP54-208ENST00000508604 RUNDC3BQ96NL0 473 aa1.83□□□□□ -2.12
NUP54-208ENST00000508604 BARD1Q99728 777 aaKnown RBP1.83□□□□□ -2.12
NUP54-208ENST00000508604 DHRS4-AS1Q9P1J3 65 aa1.83□□□□□ -2.12
NUP54-208ENST00000508604 SUCLA2Q9P2R7 463 aaPredicted RBP1.83□□□□□ -2.12
NUP54-208ENST00000508604 POLKQ9UBT6 870 aa1.83□□□□□ -2.12
NUP54-208ENST00000508604 IL16Q14005 1332 aa1.83□□□□□ -2.12
NUP54-208ENST00000508604 PI4KAP2A4QPH2 592 aa1.83□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms