RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 OXR1Q8N573 874 aa11.53□□□□□ -0.56
NUP54-202ENST00000502850 ZFP90Q8TF47 636 aa11.53□□□□□ -0.56
NUP54-202ENST00000502850 SUSD6Q92537 303 aa11.53□□□□□ -0.56
NUP54-202ENST00000502850 SMARCD2Q92925 531 aa11.53□□□□□ -0.56
NUP54-202ENST00000502850 HSH2DQ96JZ2 352 aa11.53□□□□□ -0.56
NUP54-202ENST00000502850 EPYCQ99645 322 aa11.53□□□□□ -0.56
NUP54-202ENST00000502850 AMBRA1Q9C0C7 1298 aa11.53□□□□□ -0.56
NUP54-202ENST00000502850 PCBD2Q9H0N5 130 aa11.53□□□□□ -0.56
NUP54-202ENST00000502850 TRIT1Q9H3H1 467 aaKnown RBP11.53□□□□□ -0.56
NUP54-202ENST00000502850 FZD4Q9ULV1 537 aa11.53□□□□□ -0.56
NUP54-202ENST00000502850 FAF1Q9UNN5 650 aaPredicted RBP11.53□□□□□ -0.56
NUP54-202ENST00000502850 PCDHGA8Q9Y5G5 932 aa11.53□□□□□ -0.56
NUP54-202ENST00000502850 DNMT3AQ9Y6K1 912 aaPredicted RBP11.53□□□□□ -0.56
NUP54-202ENST00000502850 PCM1Q15154 2024 aa11.52□□□□□ -0.57
NUP54-202ENST00000502850 KRT87PA6NCN2 255 aa11.52□□□□□ -0.57
NUP54-202ENST00000502850 GABRR3A8MPY1 467 aa11.52□□□□□ -0.57
NUP54-202ENST00000502850 GPR89AB7ZAQ6 455 aa11.52□□□□□ -0.57
NUP54-202ENST00000502850 JRKO75564 520 aa11.52□□□□□ -0.57
NUP54-202ENST00000502850 POP7O75817 140 aaKnown RBP11.52□□□□□ -0.57
NUP54-202ENST00000502850 SEC14L2O76054 403 aa11.52□□□□□ -0.57
NUP54-202ENST00000502850 IFNA14P01570 189 aa11.52□□□□□ -0.57
NUP54-202ENST00000502850 C9P02748 559 aa11.52□□□□□ -0.57
NUP54-202ENST00000502850 GPR89BP0CG08 455 aa11.52□□□□□ -0.57
NUP54-202ENST00000502850 NPPBP16860 134 aa11.52□□□□□ -0.57
NUP54-202ENST00000502850 CXCR2P25025 360 aa11.52□□□□□ -0.57
NUP54-202ENST00000502850 RPL10P27635 214 aaKnown RBP11.52□□□□□ -0.57
NUP54-202ENST00000502850 GSTM5P46439 218 aa11.52□□□□□ -0.57
NUP54-202ENST00000502850 IST1P53990 364 aa11.52□□□□□ -0.57
NUP54-202ENST00000502850 SLC14A1Q13336 389 aa11.52□□□□□ -0.57
NUP54-202ENST00000502850 PDE7AQ13946 482 aa11.52□□□□□ -0.57
NUP54-202ENST00000502850 NEDD8Q15843 81 aa11.52□□□□□ -0.57
NUP54-202ENST00000502850 PRAMEF14Q5SWL7 426 aa11.52□□□□□ -0.57
NUP54-202ENST00000502850 PRAMEF13Q5VWM6 474 aa11.52□□□□□ -0.57
NUP54-202ENST00000502850 TRIM40Q6P9F5 258 aa11.52□□□□□ -0.57
NUP54-202ENST00000502850 SPRED2Q7Z698 418 aa11.52□□□□□ -0.57
NUP54-202ENST00000502850 ZC3H7AQ8IWR0 971 aaKnown RBP11.52□□□□□ -0.57
NUP54-202ENST00000502850 CLECL1Q8IZS7 167 aa11.52□□□□□ -0.57
NUP54-202ENST00000502850 RNF175Q8N4F7 328 aa11.52□□□□□ -0.57
NUP54-202ENST00000502850 RAB42Q8N4Z0 105 aa11.52□□□□□ -0.57
NUP54-202ENST00000502850 LILRA3Q8N6C8 439 aaPredicted RBP11.52□□□□□ -0.57
NUP54-202ENST00000502850 ZNF366Q8N895 744 aa11.52□□□□□ -0.57
NUP54-202ENST00000502850 GPR156Q8NFN8 814 aa11.52□□□□□ -0.57
NUP54-202ENST00000502850 FBLIM1Q8WUP2 373 aa11.52□□□□□ -0.57
NUP54-202ENST00000502850 LZICQ8WZA0 190 aa11.52□□□□□ -0.57
NUP54-202ENST00000502850 NXPE3Q969Y0 559 aa11.52□□□□□ -0.57
NUP54-202ENST00000502850 PPCDCQ96CD2 204 aa11.52□□□□□ -0.57
NUP54-202ENST00000502850 ZNF347Q96SE7 839 aa11.52□□□□□ -0.57
NUP54-202ENST00000502850 BCL7BQ9BQE9 202 aa11.52□□□□□ -0.57
NUP54-202ENST00000502850 PITHD1Q9GZP4 211 aaPredicted RBP11.52□□□□□ -0.57
NUP54-202ENST00000502850 CHST8Q9H2A9 424 aa11.52□□□□□ -0.57
NUP54-202ENST00000502850 TMEM245Q9H330 911 aa11.52□□□□□ -0.57
NUP54-202ENST00000502850 SFXN1Q9H9B4 322 aa11.52□□□□□ -0.57
NUP54-202ENST00000502850 CCNB1IP1Q9NPC3 277 aa11.52□□□□□ -0.57
NUP54-202ENST00000502850 SH3BP4Q9P0V3 963 aa11.52□□□□□ -0.57
NUP54-202ENST00000502850 CIDEBQ9UHD4 219 aa11.52□□□□□ -0.57
NUP54-202ENST00000502850 TMEFF2Q9UIK5 374 aaPredicted RBP11.52□□□□□ -0.57
NUP54-202ENST00000502850 PADI2Q9Y2J8 665 aa11.52□□□□□ -0.57
NUP54-202ENST00000502850 TPRKBQ9Y3C4 175 aa11.52□□□□□ -0.57
NUP54-202ENST00000502850 SAMHD1Q9Y3Z3 626 aaKnown RBP11.52□□□□□ -0.57
NUP54-202ENST00000502850 MAGED1Q9Y5V3 778 aaPredicted RBP11.52□□□□□ -0.57
NUP54-202ENST00000502850 TCF20Q9UGU0 1960 aaKnown RBP11.51□□□□□ -0.57
NUP54-202ENST00000502850 TRIM64BA6NI03 449 aa11.51□□□□□ -0.57
NUP54-202ENST00000502850 PRRT4C9JH25 899 aa11.51□□□□□ -0.57
NUP54-202ENST00000502850 H3BMQ9 156 aa11.51□□□□□ -0.57
NUP54-202ENST00000502850 SLC1A7O00341 560 aa11.51□□□□□ -0.57
NUP54-202ENST00000502850 ADAMDEC1O15204 470 aa11.51□□□□□ -0.57
NUP54-202ENST00000502850 SEMA3DO95025 777 aa11.51□□□□□ -0.57
NUP54-202ENST00000502850 ETHE1O95571 254 aa11.51□□□□□ -0.57
NUP54-202ENST00000502850 KRT75O95678 551 aa11.51□□□□□ -0.57
NUP54-202ENST00000502850 CDK4P11802 303 aa11.51□□□□□ -0.57
NUP54-202ENST00000502850 ITGA2P17301 1181 aa11.51□□□□□ -0.57
NUP54-202ENST00000502850 ACADLP28330 430 aa11.51□□□□□ -0.57
NUP54-202ENST00000502850 PIGAP37287 484 aa11.51□□□□□ -0.57
NUP54-202ENST00000502850 ISL1P61371 349 aa11.51□□□□□ -0.57
NUP54-202ENST00000502850 ERVK-21P61565 698 aa11.51□□□□□ -0.57
NUP54-202ENST00000502850 TAP2Q03519 686 aa11.51□□□□□ -0.57
NUP54-202ENST00000502850 CD47Q08722 323 aa11.51□□□□□ -0.57
NUP54-202ENST00000502850 CAMK2GQ13555 558 aaPredicted RBP11.51□□□□□ -0.57
NUP54-202ENST00000502850 ZNF234Q14588 700 aa11.51□□□□□ -0.57
NUP54-202ENST00000502850 RGNQ15493 299 aa11.51□□□□□ -0.57
NUP54-202ENST00000502850 GPR107Q5VW38 600 aa11.51□□□□□ -0.57
NUP54-202ENST00000502850 KDM4DQ6B0I6 523 aa11.51□□□□□ -0.57
NUP54-202ENST00000502850 EP400NLQ6ZTU2 488 aa11.51□□□□□ -0.57
NUP54-202ENST00000502850 NUDT18Q6ZVK8 323 aa11.51□□□□□ -0.57
NUP54-202ENST00000502850 ZNF551Q7Z340 670 aaPredicted RBP11.51□□□□□ -0.57
NUP54-202ENST00000502850 COMMD6Q7Z4G1 85 aa11.51□□□□□ -0.57
NUP54-202ENST00000502850 METTL4Q8N3J2 472 aa11.51□□□□□ -0.57
NUP54-202ENST00000502850 OR52N2Q8NGI0 321 aa11.51□□□□□ -0.57
NUP54-202ENST00000502850 COG8Q96MW5 612 aa11.51□□□□□ -0.57
NUP54-202ENST00000502850 ASB16Q96NS5 453 aa11.51□□□□□ -0.57
NUP54-202ENST00000502850 LRRC3BQ96PB8 259 aa11.51□□□□□ -0.57
NUP54-202ENST00000502850 PELI2Q9HAT8 420 aa11.51□□□□□ -0.57
NUP54-202ENST00000502850 FANCEQ9HB96 536 aa11.51□□□□□ -0.57
NUP54-202ENST00000502850 SCN3BQ9NY72 215 aa11.51□□□□□ -0.57
NUP54-202ENST00000502850 GDE1Q9NZC3 331 aa11.51□□□□□ -0.57
NUP54-202ENST00000502850 SPATA7Q9P0W8 599 aa11.51□□□□□ -0.57
NUP54-202ENST00000502850 GULP1Q9UBP9 304 aa11.51□□□□□ -0.57
NUP54-202ENST00000502850 EBF1Q9UH73 591 aa11.51□□□□□ -0.57
NUP54-202ENST00000502850 UTS2RQ9UKP6 389 aa11.51□□□□□ -0.57
NUP54-202ENST00000502850 COQ6Q9Y2Z9 468 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms