RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 ABHD5Q8WTS1 349 aa3.81□□□□□ -1.8
USP54-217ENST00000498213 NSMCE1Q8WV22 266 aa3.81□□□□□ -1.8
USP54-217ENST00000498213 COQ8BQ96D53 544 aa3.81□□□□□ -1.8
USP54-217ENST00000498213 ZNF599Q96NL3 588 aa3.81□□□□□ -1.8
USP54-217ENST00000498213 AGAP3Q96P47 875 aa3.81□□□□□ -1.8
USP54-217ENST00000498213 CPXM1Q96SM3 734 aa3.81□□□□□ -1.8
USP54-217ENST00000498213 PSMB7Q99436 277 aa3.81□□□□□ -1.8
USP54-217ENST00000498213 TMEM121Q9BTD3 319 aa3.81□□□□□ -1.8
USP54-217ENST00000498213 LRRC61Q9BV99 259 aa3.81□□□□□ -1.8
USP54-217ENST00000498213 KRTAP1-5Q9BYS1 174 aa3.81□□□□□ -1.8
USP54-217ENST00000498213 MAGEB5Q9BZ81 275 aa3.81□□□□□ -1.8
USP54-217ENST00000498213 CLPBQ9H078 707 aa3.81□□□□□ -1.8
USP54-217ENST00000498213 LIME1Q9H400 295 aa3.81□□□□□ -1.8
USP54-217ENST00000498213 ATP13A3Q9H7F0 1226 aa3.81□□□□□ -1.8
USP54-217ENST00000498213 MLXIPLQ9NP71 852 aa3.81□□□□□ -1.8
USP54-217ENST00000498213 FBXO8Q9NRD0 319 aa3.81□□□□□ -1.8
USP54-217ENST00000498213 POT1Q9NUX5 634 aa3.81□□□□□ -1.8
USP54-217ENST00000498213 GAR1Q9NY12 217 aaKnown RBP3.81□□□□□ -1.8
USP54-217ENST00000498213 KLQ9UEF7 1012 aa3.81□□□□□ -1.8
USP54-217ENST00000498213 AMACRQ9UHK6 382 aa3.81□□□□□ -1.8
USP54-217ENST00000498213 VANGL2Q9ULK5 521 aa3.81□□□□□ -1.8
USP54-217ENST00000498213 RPS6KL1Q9Y6S9 549 aa3.81□□□□□ -1.8
USP54-217ENST00000498213 RYR3Q15413 4870 aa3.8□□□□□ -1.8
USP54-217ENST00000498213 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP3.8□□□□□ -1.8
USP54-217ENST00000498213 CNTRLQ7Z7A1 2325 aa3.8□□□□□ -1.8
USP54-217ENST00000498213 TRGV8A0A0C4DH27 118 aa3.8□□□□□ -1.8
USP54-217ENST00000498213 A0A0G2JK05 382 aa3.8□□□□□ -1.8
USP54-217ENST00000498213 KIR2DS5A0A0G2JLQ3 304 aa3.8□□□□□ -1.8
USP54-217ENST00000498213 A0A0G2JNG1 304 aa3.8□□□□□ -1.8
USP54-217ENST00000498213 IGHV5-10-1A0A0J9YXX1 117 aa3.8□□□□□ -1.8
USP54-217ENST00000498213 POM121BA6NF01 834 aa3.8□□□□□ -1.8
USP54-217ENST00000498213 IGLON5A6NGN9 336 aa3.8□□□□□ -1.8
USP54-217ENST00000498213 C21orf140B9A014 251 aa3.8□□□□□ -1.8
USP54-217ENST00000498213 F8W8V4 182 aa3.8□□□□□ -1.8
USP54-217ENST00000498213 H3BNX3 289 aa3.8□□□□□ -1.8
USP54-217ENST00000498213 KIR2DS3K7RE56 304 aa3.8□□□□□ -1.8
USP54-217ENST00000498213 PRAMEF2O60811 474 aa3.8□□□□□ -1.8
USP54-217ENST00000498213 KCNJ13O60928 360 aa3.8□□□□□ -1.8
USP54-217ENST00000498213 STK17BO94768 372 aa3.8□□□□□ -1.8
USP54-217ENST00000498213 IGHEP01854 428 aa3.8□□□□□ -1.8
USP54-217ENST00000498213 IVLP07476 585 aa3.8□□□□□ -1.8
USP54-217ENST00000498213 STSP08842 583 aa3.8□□□□□ -1.8
USP54-217ENST00000498213 CYP11B1P15538 503 aa3.8□□□□□ -1.8
USP54-217ENST00000498213 ZNF30P17039 623 aa3.8□□□□□ -1.8
USP54-217ENST00000498213 CA4P22748 312 aa3.8□□□□□ -1.8
USP54-217ENST00000498213 CASP1P29466 404 aa3.8□□□□□ -1.8
USP54-217ENST00000498213 SERPINA4P29622 427 aa3.8□□□□□ -1.8
USP54-217ENST00000498213 SDC4P31431 198 aa3.8□□□□□ -1.8
USP54-217ENST00000498213 HCAR3P49019 387 aa3.8□□□□□ -1.8
USP54-217ENST00000498213 NUMBP49757 651 aa3.8□□□□□ -1.8
USP54-217ENST00000498213 CLCNKAP51800 687 aa3.8□□□□□ -1.8
USP54-217ENST00000498213 LIMK2P53671 638 aa3.8□□□□□ -1.8
USP54-217ENST00000498213 OR1D5P58170 312 aa3.8□□□□□ -1.8
USP54-217ENST00000498213 RPL26P61254 145 aaKnown RBP3.8□□□□□ -1.8
USP54-217ENST00000498213 ARF5P84085 180 aa3.8□□□□□ -1.8
USP54-217ENST00000498213 NME3Q13232 169 aa3.8□□□□□ -1.8
USP54-217ENST00000498213 KIR2DS5Q14953 304 aa3.8□□□□□ -1.8
USP54-217ENST00000498213 CHRNA6Q15825 494 aa3.8□□□□□ -1.8
USP54-217ENST00000498213 CNGA3Q16281 694 aa3.8□□□□□ -1.8
USP54-217ENST00000498213 PDLIM3Q53GG5 364 aaPredicted RBP3.8□□□□□ -1.8
USP54-217ENST00000498213 CFAP58Q5T655 872 aa3.8□□□□□ -1.8
USP54-217ENST00000498213 SEL1L3Q68CR1 1132 aa3.8□□□□□ -1.8
USP54-217ENST00000498213 PDPK2PQ6A1A2 396 aa3.8□□□□□ -1.8
USP54-217ENST00000498213 TMEM71Q6P5X7 295 aa3.8□□□□□ -1.8
USP54-217ENST00000498213 CEACAM20Q6UY09 585 aa3.8□□□□□ -1.8
USP54-217ENST00000498213 C16orf47Q6ZP98 133 aaPredicted RBP3.8□□□□□ -1.8
USP54-217ENST00000498213 MMS22LQ6ZRQ5 1243 aa3.8□□□□□ -1.8
USP54-217ENST00000498213 NLRP14Q86W24 1093 aa3.8□□□□□ -1.8
USP54-217ENST00000498213 SFTPA2Q8IWL1 248 aa3.8□□□□□ -1.8
USP54-217ENST00000498213 KRT78Q8N1N4 520 aa3.8□□□□□ -1.8
USP54-217ENST00000498213 RTL3Q8N8U3 475 aaKnown RBP3.8□□□□□ -1.8
USP54-217ENST00000498213 FDCSPQ8NFU4 85 aa3.8□□□□□ -1.8
USP54-217ENST00000498213 OR8K5Q8NH50 307 aa3.8□□□□□ -1.8
USP54-217ENST00000498213 OR10G6Q8NH81 332 aa3.8□□□□□ -1.8
USP54-217ENST00000498213 DTX3LQ8TDB6 740 aa3.8□□□□□ -1.8
USP54-217ENST00000498213 THAP4Q8WY91 577 aa3.8□□□□□ -1.8
USP54-217ENST00000498213 CENPIQ92674 756 aaPredicted RBP3.8□□□□□ -1.8
USP54-217ENST00000498213 ECHDC3Q96DC8 303 aa3.8□□□□□ -1.8
USP54-217ENST00000498213 TBC1D31Q96DN5 1066 aa3.8□□□□□ -1.8
USP54-217ENST00000498213 NUDT22Q9BRQ3 303 aa3.8□□□□□ -1.8
USP54-217ENST00000498213 HERPUD2Q9BSE4 406 aa3.8□□□□□ -1.8
USP54-217ENST00000498213 WACQ9BTA9 647 aa3.8□□□□□ -1.8
USP54-217ENST00000498213 ANP32EQ9BTT0 268 aa3.8□□□□□ -1.8
USP54-217ENST00000498213 APOOQ9BUR5 198 aa3.8□□□□□ -1.8
USP54-217ENST00000498213 NUDT9Q9BW91 350 aa3.8□□□□□ -1.8
USP54-217ENST00000498213 PLA2G12AQ9BZM1 189 aa3.8□□□□□ -1.8
USP54-217ENST00000498213 SPRY4Q9C004 299 aa3.8□□□□□ -1.8
USP54-217ENST00000498213 ILKAPQ9H0C8 392 aaPredicted RBP3.8□□□□□ -1.8
USP54-217ENST00000498213 ING2Q9H160 280 aa3.8□□□□□ -1.8
USP54-217ENST00000498213 ZBTB26Q9HCK0 441 aa3.8□□□□□ -1.8
USP54-217ENST00000498213 UBE2TQ9NPD8 197 aaPredicted RBP3.8□□□□□ -1.8
USP54-217ENST00000498213 PHPT1Q9NRX4 125 aaPredicted RBP3.8□□□□□ -1.8
USP54-217ENST00000498213 AGPAT4Q9NRZ5 378 aa3.8□□□□□ -1.8
USP54-217ENST00000498213 PIGVQ9NUD9 493 aa3.8□□□□□ -1.8
USP54-217ENST00000498213 VPS18Q9P253 973 aa3.8□□□□□ -1.8
USP54-217ENST00000498213 KLHL42Q9P2K6 505 aa3.8□□□□□ -1.8
USP54-217ENST00000498213 OR12D3Q9UGF7 316 aa3.8□□□□□ -1.8
USP54-217ENST00000498213 XPO7Q9UIA9 1087 aaKnown RBP3.8□□□□□ -1.8
USP54-217ENST00000498213 LCMT1Q9UIC8 334 aa3.8□□□□□ -1.8
USP54-217ENST00000498213 RWDD2AQ9UIY3 292 aa3.8□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms