RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 SBSNQ6UWP8 590 aa12.03□□□□□ -0.48
PTPRF-214ENST00000496043 ANKRD37Q7Z713 158 aa12.03□□□□□ -0.48
PTPRF-214ENST00000496043 PDSS2Q86YH6 399 aa12.03□□□□□ -0.48
PTPRF-214ENST00000496043 AFAP1L2Q8N4X5 818 aa12.03□□□□□ -0.48
PTPRF-214ENST00000496043 ZNF740Q8NDX6 193 aa12.03□□□□□ -0.48
PTPRF-214ENST00000496043 TRPV3Q8NET8 790 aa12.03□□□□□ -0.48
PTPRF-214ENST00000496043 SUN3Q8TAQ9 357 aa12.03□□□□□ -0.48
PTPRF-214ENST00000496043 NT5CQ8TCD5 201 aa12.03□□□□□ -0.48
PTPRF-214ENST00000496043 NEIL2Q969S2 332 aa12.03□□□□□ -0.48
PTPRF-214ENST00000496043 PEX11GQ96HA9 241 aa12.03□□□□□ -0.48
PTPRF-214ENST00000496043 OR1F2PQ96R84 312 aa12.03□□□□□ -0.48
PTPRF-214ENST00000496043 EGFL8Q99944 293 aa12.03□□□□□ -0.48
PTPRF-214ENST00000496043 AIF1LQ9BQI0 150 aa12.03□□□□□ -0.48
PTPRF-214ENST00000496043 RHOJQ9H4E5 214 aa12.03□□□□□ -0.48
PTPRF-214ENST00000496043 PELI2Q9HAT8 420 aa12.03□□□□□ -0.48
PTPRF-214ENST00000496043 CLK4Q9HAZ1 481 aaKnown RBP12.03□□□□□ -0.48
PTPRF-214ENST00000496043 GPAMQ9HCL2 828 aa12.03□□□□□ -0.48
PTPRF-214ENST00000496043 WHRNQ9P202 907 aa12.03□□□□□ -0.48
PTPRF-214ENST00000496043 SLC22A14Q9Y267 594 aa12.03□□□□□ -0.48
PTPRF-214ENST00000496043 OARD1Q9Y530 152 aa12.03□□□□□ -0.48
PTPRF-214ENST00000496043 CNTRLQ7Z7A1 2325 aa12.03□□□□□ -0.48
PTPRF-214ENST00000496043 LRRK2Q5S007 2527 aa12.02□□□□□ -0.48
PTPRF-214ENST00000496043 IGHV3-20A0A0C4DH32 117 aa12.02□□□□□ -0.49
PTPRF-214ENST00000496043 OR2W5A6NFC9 320 aa12.02□□□□□ -0.49
PTPRF-214ENST00000496043 WIPF3A6NGB9 483 aa12.02□□□□□ -0.49
PTPRF-214ENST00000496043 EIF3HO15372 352 aaKnown RBP eCLIP12.02□□□□□ -0.494e-20■■□□□ 13
PTPRF-214ENST00000496043 CHST10O43529 356 aa12.02□□□□□ -0.49
PTPRF-214ENST00000496043 GALR3O60755 368 aaPredicted RBP12.02□□□□□ -0.49
PTPRF-214ENST00000496043 SEC24DO94855 1032 aaPredicted RBP12.02□□□□□ -0.49
PTPRF-214ENST00000496043 WDPCPO95876 746 aa12.02□□□□□ -0.49
PTPRF-214ENST00000496043 CASQ1P31415 396 aa12.02□□□□□ -0.49
PTPRF-214ENST00000496043 SCTRP47872 440 aa12.02□□□□□ -0.49
PTPRF-214ENST00000496043 EFNA3P52797 238 aa12.02□□□□□ -0.49
PTPRF-214ENST00000496043 MRPS25P82663 173 aaKnown RBP12.02□□□□□ -0.49
PTPRF-214ENST00000496043 POU4F1Q01851 419 aa12.02□□□□□ -0.49
PTPRF-214ENST00000496043 NSDHLQ15738 373 aa12.02□□□□□ -0.49
PTPRF-214ENST00000496043 EXT1Q16394 746 aa12.02□□□□□ -0.49
PTPRF-214ENST00000496043 PPP1R3AQ16821 1122 aa12.02□□□□□ -0.49
PTPRF-214ENST00000496043 BTBD16Q32M84 506 aa12.02□□□□□ -0.49
PTPRF-214ENST00000496043 PLAG1Q6DJT9 500 aa12.02□□□□□ -0.49
PTPRF-214ENST00000496043 NXPE4Q6UWF7 544 aa12.02□□□□□ -0.49
PTPRF-214ENST00000496043 LANCL3Q6ZV70 420 aa12.02□□□□□ -0.49
PTPRF-214ENST00000496043 CYS1Q717R9 158 aa12.02□□□□□ -0.49
PTPRF-214ENST00000496043 ABHD13Q7L211 337 aa12.02□□□□□ -0.49
PTPRF-214ENST00000496043 SHISA5Q8N114 240 aa12.02□□□□□ -0.49
PTPRF-214ENST00000496043 BCORP1Q8N888 145 aa12.02□□□□□ -0.49
PTPRF-214ENST00000496043 SPATA4Q8NEY3 305 aa12.02□□□□□ -0.49
PTPRF-214ENST00000496043 M1APQ8TC57 530 aa12.02□□□□□ -0.49
PTPRF-214ENST00000496043 CDKL2Q92772 493 aa12.02□□□□□ -0.49
PTPRF-214ENST00000496043 MOCOSQ96EN8 888 aa12.02□□□□□ -0.49
PTPRF-214ENST00000496043 ZNF354BQ96LW1 612 aa12.02□□□□□ -0.49
PTPRF-214ENST00000496043 MAGEB10Q96LZ2 347 aaPredicted RBP12.02□□□□□ -0.49
PTPRF-214ENST00000496043 C5orf34Q96MH7 638 aa12.02□□□□□ -0.49
PTPRF-214ENST00000496043 TSNARE1Q96NA8 513 aa12.02□□□□□ -0.49
PTPRF-214ENST00000496043 CAPS2Q9BXY5 557 aa12.02□□□□□ -0.49
PTPRF-214ENST00000496043 RNF32Q9H0A6 362 aa12.02□□□□□ -0.49
PTPRF-214ENST00000496043 DPH5Q9H2P9 285 aa12.02□□□□□ -0.49
PTPRF-214ENST00000496043 POPDC3Q9HBV1 291 aa12.02□□□□□ -0.49
PTPRF-214ENST00000496043 SAYSD1Q9NPB0 183 aa12.02□□□□□ -0.49
PTPRF-214ENST00000496043 TXNDC16Q9P2K2 825 aa12.02□□□□□ -0.49
PTPRF-214ENST00000496043 ERRFI1Q9UJM3 462 aaPredicted RBP12.02□□□□□ -0.49
PTPRF-214ENST00000496043 MTO1Q9Y2Z2 717 aaKnown RBP12.02□□□□□ -0.49
PTPRF-214ENST00000496043 NPEPPSL1A6NEC2 478 aa12.01□□□□□ -0.49
PTPRF-214ENST00000496043 MAGEB17A8MXT2 336 aa12.01□□□□□ -0.49
PTPRF-214ENST00000496043 LDLRP01130 860 aa12.01□□□□□ -0.49
PTPRF-214ENST00000496043 FHP07954 510 aa12.01□□□□□ -0.49
PTPRF-214ENST00000496043 SSTR1P30872 391 aa12.01□□□□□ -0.49
PTPRF-214ENST00000496043 OR4D2P58180 307 aa12.01□□□□□ -0.49
PTPRF-214ENST00000496043 RHAGQ02094 409 aa12.01□□□□□ -0.49
PTPRF-214ENST00000496043 ZNF33BQ06732 778 aa12.01□□□□□ -0.49
PTPRF-214ENST00000496043 ZNF460Q14592 562 aa12.01□□□□□ -0.49
PTPRF-214ENST00000496043 TSNQ15631 228 aaKnown RBP12.01□□□□□ -0.49
PTPRF-214ENST00000496043 DEFB134Q4QY38 66 aa12.01□□□□□ -0.49
PTPRF-214ENST00000496043 H3F3CQ6NXT2 135 aa12.01□□□□□ -0.49
PTPRF-214ENST00000496043 CAPN12Q6ZSI9 719 aa12.01□□□□□ -0.49
PTPRF-214ENST00000496043 C3orf62Q6ZUJ4 267 aa12.01□□□□□ -0.49
PTPRF-214ENST00000496043 FRA10AC1Q70Z53 315 aa12.01□□□□□ -0.49
PTPRF-214ENST00000496043 ADAMTSL2Q86TH1 951 aa12.01□□□□□ -0.49
PTPRF-214ENST00000496043 CEP97Q8IW35 865 aa12.01□□□□□ -0.49
PTPRF-214ENST00000496043 OR5T3Q8NGG3 340 aa12.01□□□□□ -0.49
PTPRF-214ENST00000496043 ANKRD49Q8WVL7 239 aa12.01□□□□□ -0.49
PTPRF-214ENST00000496043 TBC1D20Q96BZ9 403 aa12.01□□□□□ -0.49
PTPRF-214ENST00000496043 TSPAN17Q96FV3 270 aa12.01□□□□□ -0.49
PTPRF-214ENST00000496043 LPAR4Q99677 370 aa12.01□□□□□ -0.49
PTPRF-214ENST00000496043 MCMBPQ9BTE3 642 aa12.01□□□□□ -0.49
PTPRF-214ENST00000496043 KCNK13Q9HB14 408 aa12.01□□□□□ -0.49
PTPRF-214ENST00000496043 LANCL2Q9NS86 450 aa12.01□□□□□ -0.49
PTPRF-214ENST00000496043 OLAHQ9NV23 265 aa12.01□□□□□ -0.49
PTPRF-214ENST00000496043 OSGIN2Q9Y236 505 aa12.01□□□□□ -0.49
PTPRF-214ENST00000496043 NUP210LQ5VU65 1888 aa12.01□□□□□ -0.49
PTPRF-214ENST00000496043 OR5H15A6NDH6 313 aa12□□□□□ -0.49
PTPRF-214ENST00000496043 ZNF860A6NHJ4 632 aa12□□□□□ -0.49
PTPRF-214ENST00000496043 RAD51CO43502 376 aa12□□□□□ -0.49
PTPRF-214ENST00000496043 DNAJB6O75190 326 aa12□□□□□ -0.49
PTPRF-214ENST00000496043 F10P00742 488 aa12□□□□□ -0.49
PTPRF-214ENST00000496043 SERPINA6P08185 405 aa12□□□□□ -0.49
PTPRF-214ENST00000496043 GSTA2P09210 222 aa12□□□□□ -0.49
PTPRF-214ENST00000496043 ZNF888P0CJ79 500 aaPredicted RBP12□□□□□ -0.49
PTPRF-214ENST00000496043 C1GALT1C1LP0DN25 315 aa12□□□□□ -0.49
PTPRF-214ENST00000496043 GNAZP19086 355 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms