RNA–Protein interactions for RNA: ENST00000492506.1

HDAC3-213, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 830 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-213ENST00000492506 RANBP10Q6VN20 620 aa12.54□□□□□ -0.4
HDAC3-213ENST00000492506 LINC00696Q6ZRV3 163 aa12.54□□□□□ -0.4
HDAC3-213ENST00000492506 MRGPRGQ86SM5 289 aa12.54□□□□□ -0.4
HDAC3-213ENST00000492506 SLC15A3Q8IY34 581 aa12.54□□□□□ -0.4
HDAC3-213ENST00000492506 CCDC89Q8N998 374 aa12.54□□□□□ -0.4
HDAC3-213ENST00000492506 OR11G2Q8NGC1 345 aa12.54□□□□□ -0.4
HDAC3-213ENST00000492506 OR13C4Q8NGS5 318 aa12.54□□□□□ -0.4
HDAC3-213ENST00000492506 DENND1AQ8TEH3 1009 aa12.54□□□□□ -0.4
HDAC3-213ENST00000492506 PYROXD1Q8WU10 500 aa12.54□□□□□ -0.4
HDAC3-213ENST00000492506 ZDHHC19Q8WVZ1 309 aaPredicted RBP12.54□□□□□ -0.4
HDAC3-213ENST00000492506 NR4A3Q92570 626 aa12.54□□□□□ -0.4
HDAC3-213ENST00000492506 ULK4Q96C45 1275 aa12.54□□□□□ -0.4
HDAC3-213ENST00000492506 SNF8Q96H20 258 aa12.54□□□□□ -0.4
HDAC3-213ENST00000492506 THOC3Q96J01 351 aaKnown RBP12.54□□□□□ -0.4
HDAC3-213ENST00000492506 COX4I2Q96KJ9 171 aa12.54□□□□□ -0.4
HDAC3-213ENST00000492506 LMF1Q96S06 567 aa12.54□□□□□ -0.4
HDAC3-213ENST00000492506 MIPEPQ99797 713 aa12.54□□□□□ -0.4
HDAC3-213ENST00000492506 C1orf21Q9H246 121 aa12.54□□□□□ -0.4
HDAC3-213ENST00000492506 EPS8L2Q9H6S3 715 aa12.54□□□□□ -0.4
HDAC3-213ENST00000492506 PFDN4Q9NQP4 134 aa12.54□□□□□ -0.4
HDAC3-213ENST00000492506 EURLQ9NYK6 297 aa12.54□□□□□ -0.4
HDAC3-213ENST00000492506 UBAP1Q9NZ09 502 aa12.54□□□□□ -0.4
HDAC3-213ENST00000492506 CRLS1Q9UJA2 301 aa12.54□□□□□ -0.4
HDAC3-213ENST00000492506 PLCL2Q9UPR0 1127 aa12.54□□□□□ -0.4
HDAC3-213ENST00000492506 PCDHA3Q9Y5H8 950 aa12.54□□□□□ -0.4
HDAC3-213ENST00000492506 TRBV5-4A0A0C4DH59 114 aa12.53□□□□□ -0.4
HDAC3-213ENST00000492506 ZNF701M0R085 212 aaPredicted RBP12.53□□□□□ -0.4
HDAC3-213ENST00000492506 CCL22O00626 93 aa12.53□□□□□ -0.4
HDAC3-213ENST00000492506 TM9SF1O15321 606 aa12.53□□□□□ -0.4
HDAC3-213ENST00000492506 DENRO43583 198 aaKnown RBP12.53□□□□□ -0.4
HDAC3-213ENST00000492506 CST8O60676 142 aa12.53□□□□□ -0.4
HDAC3-213ENST00000492506 ALAS2P22557 587 aa12.53□□□□□ -0.4
HDAC3-213ENST00000492506 ACADLP28330 430 aa12.53□□□□□ -0.4
HDAC3-213ENST00000492506 PHBP35232 272 aa12.53□□□□□ -0.4
HDAC3-213ENST00000492506 ZNF140P52738 457 aaPredicted RBP12.53□□□□□ -0.4
HDAC3-213ENST00000492506 NR1H2P55055 460 aa12.53□□□□□ -0.4
HDAC3-213ENST00000492506 CDK16Q00536 496 aa12.53□□□□□ -0.4
HDAC3-213ENST00000492506 THOC5Q13769 683 aaKnown RBP12.53□□□□□ -0.4
HDAC3-213ENST00000492506 CCDC137Q6PK04 289 aaKnown RBP12.53□□□□□ -0.4
HDAC3-213ENST00000492506 SHISA6Q6ZSJ9 500 aa12.53□□□□□ -0.4
HDAC3-213ENST00000492506 TTLL10Q6ZVT0 673 aa12.53□□□□□ -0.4
HDAC3-213ENST00000492506 SNX20Q7Z614 316 aa12.53□□□□□ -0.4
HDAC3-213ENST00000492506 DHDDSQ86SQ9 333 aa12.53□□□□□ -0.4
HDAC3-213ENST00000492506 FAM20CQ8IXL6 584 aa12.53□□□□□ -0.4
HDAC3-213ENST00000492506 ZNF808Q8N4W9 903 aaPredicted RBP12.53□□□□□ -0.4
HDAC3-213ENST00000492506 CLDN19Q8N6F1 224 aa12.53□□□□□ -0.4
HDAC3-213ENST00000492506 OR1N1Q8NGS0 311 aa12.53□□□□□ -0.4
HDAC3-213ENST00000492506 SLC35G2Q8TBE7 412 aa12.53□□□□□ -0.4
HDAC3-213ENST00000492506 HEXDCQ8WVB3 486 aa12.53□□□□□ -0.4
HDAC3-213ENST00000492506 PSMF1Q92530 271 aa12.53□□□□□ -0.4
HDAC3-213ENST00000492506 VAT1Q99536 393 aa12.53□□□□□ -0.4
HDAC3-213ENST00000492506 ARPC5LQ9BPX5 153 aa12.53□□□□□ -0.4
HDAC3-213ENST00000492506 FICDQ9BVA6 458 aa12.53□□□□□ -0.4
HDAC3-213ENST00000492506 FSD1LQ9BXM9 530 aa12.53□□□□□ -0.4
HDAC3-213ENST00000492506 MRM3Q9HC36 420 aaKnown RBP12.53□□□□□ -0.4
HDAC3-213ENST00000492506 CHST11Q9NPF2 352 aa12.53□□□□□ -0.4
HDAC3-213ENST00000492506 ENAMQ9NRM1 1142 aa12.53□□□□□ -0.4
HDAC3-213ENST00000492506 QPCTLQ9NXS2 382 aa12.53□□□□□ -0.4
HDAC3-213ENST00000492506 ZDHHC3Q9NYG2 299 aa12.53□□□□□ -0.4
HDAC3-213ENST00000492506 OR6C2Q9NZP2 312 aa12.53□□□□□ -0.4
HDAC3-213ENST00000492506 RAB26Q9ULW5 256 aa12.53□□□□□ -0.4
HDAC3-213ENST00000492506 FAM32AQ9Y421 112 aaKnown RBP12.53□□□□□ -0.4
HDAC3-213ENST00000492506 A0A1B0GX78 115 aa12.52□□□□□ -0.41
HDAC3-213ENST00000492506 VSTM2BA6NLU5 285 aa12.52□□□□□ -0.41
HDAC3-213ENST00000492506 CFAP99D6REC4 459 aa12.52□□□□□ -0.41
HDAC3-213ENST00000492506 CASQ2O14958 399 aaPredicted RBP12.52□□□□□ -0.41
HDAC3-213ENST00000492506 LSM1O15116 133 aaKnown RBP12.52□□□□□ -0.41
HDAC3-213ENST00000492506 SERPINB7O75635 380 aa12.52□□□□□ -0.41
HDAC3-213ENST00000492506 TRMUO75648 421 aaKnown RBP12.52□□□□□ -0.41
HDAC3-213ENST00000492506 PRSS56P0CW18 603 aa12.52□□□□□ -0.41
HDAC3-213ENST00000492506 TNFSF10P50591 281 aa12.52□□□□□ -0.41
HDAC3-213ENST00000492506 PTK6Q13882 451 aa12.52□□□□□ -0.41
HDAC3-213ENST00000492506 PDK3Q15120 406 aa12.52□□□□□ -0.41
HDAC3-213ENST00000492506 LONRF1Q17RB8 773 aa12.52□□□□□ -0.41
HDAC3-213ENST00000492506 IRAK1BP1Q5VVH5 260 aa12.52□□□□□ -0.41
HDAC3-213ENST00000492506 TRABD2AQ86V40 505 aa12.52□□□□□ -0.41
HDAC3-213ENST00000492506 KBTBD2Q8IY47 623 aa12.52□□□□□ -0.41
HDAC3-213ENST00000492506 NMD3Q96D46 503 aaKnown RBP12.52□□□□□ -0.41
HDAC3-213ENST00000492506 DHRS1Q96LJ7 313 aa12.52□□□□□ -0.41
HDAC3-213ENST00000492506 C19orf43Q9BQ61 176 aa12.52□□□□□ -0.41
HDAC3-213ENST00000492506 APOL2Q9BQE5 337 aa12.52□□□□□ -0.41
HDAC3-213ENST00000492506 RBM38Q9H0Z9 239 aaKnown RBP12.52□□□□□ -0.41
HDAC3-213ENST00000492506 SOX17Q9H6I2 414 aaPredicted RBP12.52□□□□□ -0.41
HDAC3-213ENST00000492506 GIN1Q9NXP7 522 aa12.52□□□□□ -0.41
HDAC3-213ENST00000492506 CTSFQ9UBX1 484 aa12.52□□□□□ -0.41
HDAC3-213ENST00000492506 EFR3BQ9Y2G0 817 aa12.52□□□□□ -0.41
HDAC3-213ENST00000492506 KLHL20Q9Y2M5 609 aa12.52□□□□□ -0.41
HDAC3-213ENST00000492506 GTF3C1Q12789 2109 aa12.52□□□□□ -0.41
HDAC3-213ENST00000492506 NAV3Q8IVL0 2385 aa12.51□□□□□ -0.41
HDAC3-213ENST00000492506 CCL21O00585 134 aa12.51□□□□□ -0.41
HDAC3-213ENST00000492506 DSCR3O14972 297 aa12.51□□□□□ -0.41
HDAC3-213ENST00000492506 COX6B1P14854 86 aa12.51□□□□□ -0.41
HDAC3-213ENST00000492506 ITGALP20701 1170 aa12.51□□□□□ -0.41
HDAC3-213ENST00000492506 MAGP20916 626 aa12.51□□□□□ -0.41
HDAC3-213ENST00000492506 ACRV1P26436 265 aa12.51□□□□□ -0.41
HDAC3-213ENST00000492506 MST1P26927 711 aa12.51□□□□□ -0.41
HDAC3-213ENST00000492506 SOX11P35716 441 aa12.51□□□□□ -0.41
HDAC3-213ENST00000492506 CA7P43166 264 aa12.51□□□□□ -0.41
HDAC3-213ENST00000492506 TMED10P49755 219 aaKnown RBP12.51□□□□□ -0.41
HDAC3-213ENST00000492506 ARFIP2P53365 341 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms