RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 NT5CQ8TCD5 201 aa23.35■■□□□ 1.33
UPF3A-209ENST00000492270 CYTH2Q99418 400 aa23.35■■□□□ 1.33
UPF3A-209ENST00000492270 IGSF5Q9NSI5 407 aa23.35■■□□□ 1.33
UPF3A-209ENST00000492270 CD274Q9NZQ7 290 aa23.35■■□□□ 1.33
UPF3A-209ENST00000492270 C5AR2Q9P296 337 aa23.35■■□□□ 1.33
UPF3A-209ENST00000492270 SLC22A7Q9Y694 548 aa23.35■■□□□ 1.33
UPF3A-209ENST00000492270 SHANK1Q9Y566 2161 aa23.35■■□□□ 1.33
UPF3A-209ENST00000492270 OR2W5A6NFC9 320 aa23.34■■□□□ 1.33
UPF3A-209ENST00000492270 SORBS2O94875 1100 aaKnown RBP23.34■■□□□ 1.33
UPF3A-209ENST00000492270 HPP00738 406 aa23.34■■□□□ 1.33
UPF3A-209ENST00000492270 ZNF888P0CJ79 500 aaPredicted RBP23.34■■□□□ 1.33
UPF3A-209ENST00000492270 CRABP2P29373 138 aa23.34■■□□□ 1.33
UPF3A-209ENST00000492270 AHRP35869 848 aa23.34■■□□□ 1.33
UPF3A-209ENST00000492270 GGT5P36269 586 aa23.34■■□□□ 1.33
UPF3A-209ENST00000492270 CSRP3P50461 194 aa23.34■■□□□ 1.33
UPF3A-209ENST00000492270 PWP1Q13610 501 aa23.34■■□□□ 1.33
UPF3A-209ENST00000492270 SLC6A19Q695T7 634 aa23.34■■□□□ 1.33
UPF3A-209ENST00000492270 JMJD6Q6NYC1 403 aaPredicted RBP23.34■■□□□ 1.33
UPF3A-209ENST00000492270 SLCO4C1Q6ZQN7 724 aa23.34■■□□□ 1.33
UPF3A-209ENST00000492270 TBC1D1Q86TI0 1168 aaPredicted RBP23.34■■□□□ 1.33
UPF3A-209ENST00000492270 TCAIMQ8N3R3 496 aa23.34■■□□□ 1.33
UPF3A-209ENST00000492270 AFAP1L2Q8N4X5 818 aa23.34■■□□□ 1.33
UPF3A-209ENST00000492270 PDPRQ8NCN5 879 aa23.34■■□□□ 1.33
UPF3A-209ENST00000492270 OR5T3Q8NGG3 340 aa23.34■■□□□ 1.33
UPF3A-209ENST00000492270 KCTD4Q8WVF5 259 aa23.34■■□□□ 1.33
UPF3A-209ENST00000492270 RBCK1Q9BYM8 510 aa23.34■■□□□ 1.33
UPF3A-209ENST00000492270 VN1R1Q9GZP7 353 aa23.34■■□□□ 1.33
UPF3A-209ENST00000492270 PLAAQ9Y263 795 aa23.34■■□□□ 1.33
UPF3A-209ENST00000492270 ASB1Q9Y576 335 aa23.34■■□□□ 1.33
UPF3A-209ENST00000492270 C4orf51C9J302 202 aa23.33■■□□□ 1.33
UPF3A-209ENST00000492270 DNAJB6O75190 326 aa23.33■■□□□ 1.33
UPF3A-209ENST00000492270 C1GALT1C1LP0DN25 315 aa23.33■■□□□ 1.33
UPF3A-209ENST00000492270 GNAZP19086 355 aa23.33■■□□□ 1.33
UPF3A-209ENST00000492270 HNF4AP41235 474 aa23.33■■□□□ 1.33
UPF3A-209ENST00000492270 FOXK1P85037 733 aa23.33■■□□□ 1.33
UPF3A-209ENST00000492270 HYAL2Q12891 473 aa23.33■■□□□ 1.33
UPF3A-209ENST00000492270 SLBPQ14493 270 aaKnown RBP eCLIP23.33■■□□□ 1.33
UPF3A-209ENST00000492270 DEFB134Q4QY38 66 aa23.33■■□□□ 1.33
UPF3A-209ENST00000492270 MFSD4BQ5TF39 518 aa23.33■■□□□ 1.33
UPF3A-209ENST00000492270 SULT1C3Q6IMI6 304 aa23.33■■□□□ 1.33
UPF3A-209ENST00000492270 CEP128Q6ZU80 1094 aa23.33■■□□□ 1.33
UPF3A-209ENST00000492270 ISCA2Q86U28 154 aa23.33■■□□□ 1.33
UPF3A-209ENST00000492270 CENPLQ8N0S6 344 aaPredicted RBP23.33■■□□□ 1.33
UPF3A-209ENST00000492270 Q8NA96 180 aa23.33■■□□□ 1.33
UPF3A-209ENST00000492270 NXNL1Q96CM4 212 aa23.33■■□□□ 1.33
UPF3A-209ENST00000492270 THOC3Q96J01 351 aaKnown RBP23.33■■□□□ 1.33
UPF3A-209ENST00000492270 VPS50Q96JG6 964 aa23.33■■□□□ 1.33
UPF3A-209ENST00000492270 ATOH8Q96SQ7 321 aa23.33■■□□□ 1.33
UPF3A-209ENST00000492270 AICDAQ9GZX7 198 aa23.33■■□□□ 1.33
UPF3A-209ENST00000492270 SNX15Q9NRS6 342 aa23.33■■□□□ 1.33
UPF3A-209ENST00000492270 DNAJC11Q9NVH1 559 aa23.33■■□□□ 1.33
UPF3A-209ENST00000492270 PTBP2Q9UKA9 531 aaKnown RBP23.33■■□□□ 1.33
UPF3A-209ENST00000492270 PRRC2CQ9Y520 2896 aaKnown RBP23.32■■□□□ 1.32
UPF3A-209ENST00000492270 IGHV1-45A0A0A0MS14 117 aa23.32■■□□□ 1.32
UPF3A-209ENST00000492270 NSG1A0A0A6YYJ2 146 aa23.32■■□□□ 1.32
UPF3A-209ENST00000492270 GALR3O60755 368 aaPredicted RBP23.32■■□□□ 1.32
UPF3A-209ENST00000492270 PRAMEF4O60810 478 aa23.32■■□□□ 1.32
UPF3A-209ENST00000492270 ALPPP05187 535 aa23.32■■□□□ 1.32
UPF3A-209ENST00000492270 LTA4HP09960 611 aaKnown RBP23.32■■□□□ 1.32
UPF3A-209ENST00000492270 ALOX12P18054 663 aa23.32■■□□□ 1.32
UPF3A-209ENST00000492270 CXCR2P25025 360 aa23.32■■□□□ 1.32
UPF3A-209ENST00000492270 OLR1P78380 273 aa23.32■■□□□ 1.32
UPF3A-209ENST00000492270 KCNC4Q03721 635 aa23.32■■□□□ 1.32
UPF3A-209ENST00000492270 RGS1Q08116 209 aa23.32■■□□□ 1.32
UPF3A-209ENST00000492270 HERC3Q15034 1050 aa23.32■■□□□ 1.32
UPF3A-209ENST00000492270 MINDY4Q4G0A6 757 aa23.32■■□□□ 1.32
UPF3A-209ENST00000492270 CDKL4Q5MAI5 379 aa23.32■■□□□ 1.32
UPF3A-209ENST00000492270 PRAMEF9Q5VWM5 478 aa23.32■■□□□ 1.32
UPF3A-209ENST00000492270 TMEM205Q6UW68 189 aa23.32■■□□□ 1.32
UPF3A-209ENST00000492270 LANCL3Q6ZV70 420 aa23.32■■□□□ 1.32
UPF3A-209ENST00000492270 HPS6Q86YV9 775 aa23.32■■□□□ 1.32
UPF3A-209ENST00000492270 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP23.32■■□□□ 1.32
UPF3A-209ENST00000492270 CEP112Q8N8E3 955 aa23.32■■□□□ 1.32
UPF3A-209ENST00000492270 SNX31Q8N9S9 440 aa23.32■■□□□ 1.32
UPF3A-209ENST00000492270 CREB3L4Q8TEY5 395 aa23.32■■□□□ 1.32
UPF3A-209ENST00000492270 PEX11GQ96HA9 241 aa23.32■■□□□ 1.32
UPF3A-209ENST00000492270 FUT8Q9BYC5 575 aa23.32■■□□□ 1.32
UPF3A-209ENST00000492270 SLC6A16Q9GZN6 736 aa23.32■■□□□ 1.32
UPF3A-209ENST00000492270 LHPPQ9H008 270 aa23.32■■□□□ 1.32
UPF3A-209ENST00000492270 KLHL31Q9H511 634 aa23.32■■□□□ 1.32
UPF3A-209ENST00000492270 CLMPQ9H6B4 373 aa23.32■■□□□ 1.32
UPF3A-209ENST00000492270 NMRAL1Q9HBL8 299 aa23.32■■□□□ 1.32
UPF3A-209ENST00000492270 ACOT9Q9Y305 439 aa23.32■■□□□ 1.32
UPF3A-209ENST00000492270 A0A1W2PQ72 361 aa23.31■■□□□ 1.32
UPF3A-209ENST00000492270 TTLL8A6PVC2 850 aa23.31■■□□□ 1.32
UPF3A-209ENST00000492270 UBXN8O00124 270 aa23.31■■□□□ 1.32
UPF3A-209ENST00000492270 STK16O75716 305 aa23.31■■□□□ 1.32
UPF3A-209ENST00000492270 IPO13O94829 963 aaKnown RBP23.31■■□□□ 1.32
UPF3A-209ENST00000492270 S100BP04271 92 aaPredicted RBP23.31■■□□□ 1.32
UPF3A-209ENST00000492270 C2P06681 752 aa23.31■■□□□ 1.32
UPF3A-209ENST00000492270 CELA2AP08217 269 aa23.31■■□□□ 1.32
UPF3A-209ENST00000492270 RAB8AP61006 207 aa23.31■■□□□ 1.32
UPF3A-209ENST00000492270 PCOLCEQ15113 449 aa23.31■■□□□ 1.32
UPF3A-209ENST00000492270 PRR30Q53SZ7 412 aaPredicted RBP23.31■■□□□ 1.32
UPF3A-209ENST00000492270 NDUFAF7Q7L592 441 aa23.31■■□□□ 1.32
UPF3A-209ENST00000492270 UHMK1Q8TAS1 419 aaKnown RBP23.31■■□□□ 1.32
UPF3A-209ENST00000492270 STAG3L4Q8TBR4 150 aa23.31■■□□□ 1.32
UPF3A-209ENST00000492270 UTP15Q8TED0 518 aaKnown RBP23.31■■□□□ 1.32
UPF3A-209ENST00000492270 MIB2Q96AX9 1013 aa23.31■■□□□ 1.32
UPF3A-209ENST00000492270 CNOT10Q9H9A5 744 aaKnown RBP23.31■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms