RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 RNF112Q9ULX5 631 aa17.16■□□□□ 0.34
COL9A3-214ENST00000490398 UBXN8O00124 270 aa17.15■□□□□ 0.34
COL9A3-214ENST00000490398 PRPF4O43172 522 aaKnown RBP eCLIP17.15■□□□□ 0.34
COL9A3-214ENST00000490398 KLHL18O94889 574 aa17.15■□□□□ 0.34
COL9A3-214ENST00000490398 IGHEP01854 428 aa17.15■□□□□ 0.34
COL9A3-214ENST00000490398 ALDOAP04075 364 aaKnown RBP17.15■□□□□ 0.34
COL9A3-214ENST00000490398 CELA2AP08217 269 aa17.15■□□□□ 0.34
COL9A3-214ENST00000490398 RHOXF2BP0C7M4 288 aa17.15■□□□□ 0.34
COL9A3-214ENST00000490398 SLC35G6P0C7Q6 338 aa17.15■□□□□ 0.34
COL9A3-214ENST00000490398 C1GALT1C1LP0DN25 315 aa17.15■□□□□ 0.34
COL9A3-214ENST00000490398 COX6A1P12074 109 aa17.15■□□□□ 0.34
COL9A3-214ENST00000490398 PHBP35232 272 aa17.15■□□□□ 0.34
COL9A3-214ENST00000490398 GLRBP48167 497 aa17.15■□□□□ 0.34
COL9A3-214ENST00000490398 AGTR2P50052 363 aa17.15■□□□□ 0.34
COL9A3-214ENST00000490398 SOX8P57073 446 aa17.15■□□□□ 0.34
COL9A3-214ENST00000490398 CDC16Q13042 620 aa17.15■□□□□ 0.34
COL9A3-214ENST00000490398 SLBPQ14493 270 aaKnown RBP eCLIP17.15■□□□□ 0.34
COL9A3-214ENST00000490398 MYBPC3Q14896 1274 aa17.15■□□□□ 0.34
COL9A3-214ENST00000490398 TUBB8Q3ZCM7 444 aa17.15■□□□□ 0.34
COL9A3-214ENST00000490398 PDPRQ8NCN5 879 aa17.15■□□□□ 0.34
COL9A3-214ENST00000490398 OR51Q1Q8NH59 317 aa17.15■□□□□ 0.34
COL9A3-214ENST00000490398 CREB3L4Q8TEY5 395 aa17.15■□□□□ 0.34
COL9A3-214ENST00000490398 SLC44A1Q8WWI5 657 aa17.15■□□□□ 0.34
COL9A3-214ENST00000490398 GPR78Q96P69 363 aa17.15■□□□□ 0.34
COL9A3-214ENST00000490398 RHOXF2Q9BQY4 288 aa17.15■□□□□ 0.34
COL9A3-214ENST00000490398 FAM129AQ9BZQ8 928 aa17.15■□□□□ 0.34
COL9A3-214ENST00000490398 ZNF160Q9HCG1 818 aa17.15■□□□□ 0.34
COL9A3-214ENST00000490398 ANKHQ9HCJ1 492 aa17.15■□□□□ 0.34
COL9A3-214ENST00000490398 MKL2Q9ULH7 1088 aa17.15■□□□□ 0.34
COL9A3-214ENST00000490398 ZNF451Q9Y4E5 1061 aa17.15■□□□□ 0.34
COL9A3-214ENST00000490398 PRRC2CQ9Y520 2896 aaKnown RBP17.14■□□□□ 0.34
COL9A3-214ENST00000490398 TBX6O95947 436 aaPredicted RBP17.14■□□□□ 0.33
COL9A3-214ENST00000490398 HEXBP07686 556 aa17.14■□□□□ 0.33
COL9A3-214ENST00000490398 LTA4HP09960 611 aaKnown RBP17.14■□□□□ 0.33
COL9A3-214ENST00000490398 FAM153BP0C7A2 387 aa17.14■□□□□ 0.33
COL9A3-214ENST00000490398 ZNF888P0CJ79 500 aaPredicted RBP17.14■□□□□ 0.33
COL9A3-214ENST00000490398 MTHFD2P13995 350 aa17.14■□□□□ 0.33
COL9A3-214ENST00000490398 CD22P20273 847 aa17.14■□□□□ 0.33
COL9A3-214ENST00000490398 ITGA3P26006 1051 aa17.14■□□□□ 0.33
COL9A3-214ENST00000490398 RAB8AP61006 207 aa17.14■□□□□ 0.33
COL9A3-214ENST00000490398 PWP1Q13610 501 aa17.14■□□□□ 0.33
COL9A3-214ENST00000490398 FAM153CQ494X1 144 aa17.14■□□□□ 0.33
COL9A3-214ENST00000490398 DEFB134Q4QY38 66 aa17.14■□□□□ 0.33
COL9A3-214ENST00000490398 SULT1C3Q6IMI6 304 aa17.14■□□□□ 0.33
COL9A3-214ENST00000490398 LANCL3Q6ZV70 420 aa17.14■□□□□ 0.33
COL9A3-214ENST00000490398 VN1R5Q7Z5H4 357 aa17.14■□□□□ 0.33
COL9A3-214ENST00000490398 TBC1D1Q86TI0 1168 aaPredicted RBP17.14■□□□□ 0.33
COL9A3-214ENST00000490398 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP17.14■□□□□ 0.33
COL9A3-214ENST00000490398 PLD6Q8N2A8 252 aaKnown RBP17.14■□□□□ 0.33
COL9A3-214ENST00000490398 Q8NA96 180 aa17.14■□□□□ 0.33
COL9A3-214ENST00000490398 UTP15Q8TED0 518 aaKnown RBP17.14■□□□□ 0.33
COL9A3-214ENST00000490398 NACC2Q96BF6 587 aa17.14■□□□□ 0.33
COL9A3-214ENST00000490398 AIF1LQ9BQI0 150 aa17.14■□□□□ 0.33
COL9A3-214ENST00000490398 VN1R1Q9GZP7 353 aa17.14■□□□□ 0.33
COL9A3-214ENST00000490398 DNAJC11Q9NVH1 559 aa17.14■□□□□ 0.33
COL9A3-214ENST00000490398 C14orf105Q9NVL8 296 aa17.14■□□□□ 0.33
COL9A3-214ENST00000490398 ZNF358Q9NW07 568 aa17.14■□□□□ 0.33
COL9A3-214ENST00000490398 ACOT9Q9Y305 439 aa17.14■□□□□ 0.33
COL9A3-214ENST00000490398 SLC22A7Q9Y694 548 aa17.14■□□□□ 0.33
COL9A3-214ENST00000490398 A0A096LPK6 155 aa17.13■□□□□ 0.33
COL9A3-214ENST00000490398 IGHV3-20A0A0C4DH32 117 aa17.13■□□□□ 0.33
COL9A3-214ENST00000490398 LRRC14BA6NHZ5 514 aa17.13■□□□□ 0.33
COL9A3-214ENST00000490398 GALR3O60755 368 aaPredicted RBP17.13■□□□□ 0.33
COL9A3-214ENST00000490398 STK16O75716 305 aa17.13■□□□□ 0.33
COL9A3-214ENST00000490398 WISP1O95388 367 aa17.13■□□□□ 0.33
COL9A3-214ENST00000490398 SMIM10L1P0DMW3 83 aa17.13■□□□□ 0.33
COL9A3-214ENST00000490398 ACPPP15309 386 aa17.13■□□□□ 0.33
COL9A3-214ENST00000490398 ALOX12P18054 663 aa17.13■□□□□ 0.33
COL9A3-214ENST00000490398 GNAZP19086 355 aa17.13■□□□□ 0.33
COL9A3-214ENST00000490398 AHRP35869 848 aa17.13■□□□□ 0.33
COL9A3-214ENST00000490398 XCR1P46094 333 aa17.13■□□□□ 0.33
COL9A3-214ENST00000490398 AIMP2Q13155 320 aaKnown RBP17.13■□□□□ 0.33
COL9A3-214ENST00000490398 PCOLCEQ15113 449 aa17.13■□□□□ 0.33
COL9A3-214ENST00000490398 PRR30Q53SZ7 412 aaPredicted RBP17.13■□□□□ 0.33
COL9A3-214ENST00000490398 TMEM205Q6UW68 189 aa17.13■□□□□ 0.33
COL9A3-214ENST00000490398 GSPT2Q8IYD1 628 aaKnown RBP17.13■□□□□ 0.33
COL9A3-214ENST00000490398 TCAIMQ8N3R3 496 aa17.13■□□□□ 0.33
COL9A3-214ENST00000490398 SNX31Q8N9S9 440 aa17.13■□□□□ 0.33
COL9A3-214ENST00000490398 STAG3L4Q8TBR4 150 aa17.13■□□□□ 0.33
COL9A3-214ENST00000490398 PEX11GQ96HA9 241 aa17.13■□□□□ 0.33
COL9A3-214ENST00000490398 SMIM10Q96HG1 83 aa17.13■□□□□ 0.33
COL9A3-214ENST00000490398 PAFAH2Q99487 392 aa17.13■□□□□ 0.33
COL9A3-214ENST00000490398 SLC6A16Q9GZN6 736 aa17.13■□□□□ 0.33
COL9A3-214ENST00000490398 NMRAL1Q9HBL8 299 aa17.13■□□□□ 0.33
COL9A3-214ENST00000490398 ZNF490Q9ULM2 529 aaPredicted RBP17.13■□□□□ 0.33
COL9A3-214ENST00000490398 CSAG2Q9Y5P2 127 aa17.13■□□□□ 0.33
COL9A3-214ENST00000490398 FLNCQ14315 2725 aa17.12■□□□□ 0.33
COL9A3-214ENST00000490398 IGHV1-45A0A0A0MS14 117 aa17.12■□□□□ 0.33
COL9A3-214ENST00000490398 SUPT3HB4E1H0 165 aa17.12■□□□□ 0.33
COL9A3-214ENST00000490398 POC1B-GALNT4F8VUJ3 575 aa17.12■□□□□ 0.33
COL9A3-214ENST00000490398 MAP2K7O14733 419 aa17.12■□□□□ 0.33
COL9A3-214ENST00000490398 CCNT2O60583 730 aaKnown RBP17.12■□□□□ 0.33
COL9A3-214ENST00000490398 KERAO60938 352 aa17.12■□□□□ 0.33
COL9A3-214ENST00000490398 SUPT3HO75486 399 aa17.12■□□□□ 0.33
COL9A3-214ENST00000490398 GCAP28676 217 aa17.12■□□□□ 0.33
COL9A3-214ENST00000490398 DOC2AQ14183 400 aa17.12■□□□□ 0.33
COL9A3-214ENST00000490398 MINDY4Q4G0A6 757 aa17.12■□□□□ 0.33
COL9A3-214ENST00000490398 TOR1AIP1Q5JTV8 583 aa17.12■□□□□ 0.33
COL9A3-214ENST00000490398 CDKL4Q5MAI5 379 aa17.12■□□□□ 0.33
COL9A3-214ENST00000490398 VWA5B1Q5TIE3 1220 aa17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms