RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 A0A1W2PRQ8 180 aa15.92■□□□□ 0.14
COL7A1-210ENST00000487017 TSPAN4O14817 238 aa15.92■□□□□ 0.14
COL7A1-210ENST00000487017 PRMT3O60678 531 aa15.92■□□□□ 0.14
COL7A1-210ENST00000487017 RAB36O95755 333 aa15.92■□□□□ 0.14
COL7A1-210ENST00000487017 NDUFS1P28331 727 aa15.92■□□□□ 0.14
COL7A1-210ENST00000487017 VLDLRP98155 873 aa15.92■□□□□ 0.14
COL7A1-210ENST00000487017 TICAM1Q8IUC6 712 aa15.92■□□□□ 0.14
COL7A1-210ENST00000487017 LNX2Q8N448 690 aa15.92■□□□□ 0.14
COL7A1-210ENST00000487017 NPLOC4Q8TAT6 608 aa15.92■□□□□ 0.14
COL7A1-210ENST00000487017 CCDC107Q8WV48 283 aa15.92■□□□□ 0.14
COL7A1-210ENST00000487017 NR4A3Q92570 626 aa15.92■□□□□ 0.14
COL7A1-210ENST00000487017 SEC14L4Q9UDX3 406 aa15.92■□□□□ 0.14
COL7A1-210ENST00000487017 MTMR11A4FU01 709 aa15.92■□□□□ 0.14
COL7A1-210ENST00000487017 IFI30P13284 250 aa15.92■□□□□ 0.14
COL7A1-210ENST00000487017 HK1P19367 917 aa15.92■□□□□ 0.14
COL7A1-210ENST00000487017 SLC36A4Q6YBV0 504 aa15.92■□□□□ 0.14
COL7A1-210ENST00000487017 SLC15A3Q8IY34 581 aa15.92■□□□□ 0.14
COL7A1-210ENST00000487017 ARMC10Q8N2F6 343 aa15.92■□□□□ 0.14
COL7A1-210ENST00000487017 MINDY1Q8N5J2 469 aa15.92■□□□□ 0.14
COL7A1-210ENST00000487017 CCDC54Q8NEL0 328 aa15.92■□□□□ 0.14
COL7A1-210ENST00000487017 C15orf40Q8WUR7 153 aa15.92■□□□□ 0.14
COL7A1-210ENST00000487017 AIG1Q9NVV5 245 aa15.92■□□□□ 0.14
COL7A1-210ENST00000487017 MGAT4AQ9UM21 535 aa15.92■□□□□ 0.14
COL7A1-210ENST00000487017 GATBO75879 557 aaKnown RBP15.92■□□□□ 0.14
COL7A1-210ENST00000487017 CLCN2P51788 898 aa15.92■□□□□ 0.14
COL7A1-210ENST00000487017 CLCNKAP51800 687 aa15.92■□□□□ 0.14
COL7A1-210ENST00000487017 ZNF45Q02386 682 aa15.92■□□□□ 0.14
COL7A1-210ENST00000487017 ZNF763Q0D2J5 394 aa15.92■□□□□ 0.14
COL7A1-210ENST00000487017 PPIGQ13427 754 aaKnown RBP eCLIP15.92■□□□□ 0.143e-7■■■■■ 38.8
COL7A1-210ENST00000487017 C6orf141Q5SZD1 244 aa15.92■□□□□ 0.14
COL7A1-210ENST00000487017 CHERPQ8IWX8 916 aaKnown RBP15.92■□□□□ 0.14
COL7A1-210ENST00000487017 ANKFN1Q8N957 763 aa15.92■□□□□ 0.14
COL7A1-210ENST00000487017 TMEM145Q8NBT3 493 aa15.92■□□□□ 0.14
COL7A1-210ENST00000487017 CNIH3Q8TBE1 160 aa15.92■□□□□ 0.14
COL7A1-210ENST00000487017 DNAJC27Q9NZQ0 273 aa15.92■□□□□ 0.14
COL7A1-210ENST00000487017 ZNF208O43345 1280 aa15.92■□□□□ 0.14
COL7A1-210ENST00000487017 OR1I1O60431 355 aa15.92■□□□□ 0.14
COL7A1-210ENST00000487017 ARL6IP5O75915 188 aa15.92■□□□□ 0.14
COL7A1-210ENST00000487017 S1PR4O95977 384 aa15.92■□□□□ 0.14
COL7A1-210ENST00000487017 MAP3K8P41279 467 aa15.92■□□□□ 0.14
COL7A1-210ENST00000487017 MAB21L1Q13394 359 aa15.92■□□□□ 0.14
COL7A1-210ENST00000487017 C4orf46Q504U0 113 aa15.92■□□□□ 0.14
COL7A1-210ENST00000487017 TMEM236Q5W0B7 351 aa15.92■□□□□ 0.14
COL7A1-210ENST00000487017 GALNT7Q86SF2 657 aa15.92■□□□□ 0.14
COL7A1-210ENST00000487017 SLC38A3Q99624 504 aa15.92■□□□□ 0.14
COL7A1-210ENST00000487017 ELOVL2Q9NXB9 296 aa15.92■□□□□ 0.14
COL7A1-210ENST00000487017 MS4A12Q9NXJ0 267 aa15.92■□□□□ 0.14
COL7A1-210ENST00000487017 CNOT11Q9UKZ1 510 aaKnown RBP15.92■□□□□ 0.14
COL7A1-210ENST00000487017 CARD8Q9Y2G2 431 aa15.92■□□□□ 0.14
COL7A1-210ENST00000487017 SETD1AO15047 1707 aaKnown RBP15.91■□□□□ 0.14
COL7A1-210ENST00000487017 KDM4FA0A1W2PPD8 638 aa15.91■□□□□ 0.14
COL7A1-210ENST00000487017 RHPN2P1A8MT19 583 aa15.91■□□□□ 0.14
COL7A1-210ENST00000487017 CH25HO95992 272 aa15.91■□□□□ 0.14
COL7A1-210ENST00000487017 PITX1P78337 314 aaPredicted RBP15.91■□□□□ 0.14
COL7A1-210ENST00000487017 ANKDD1AQ495B1 522 aa15.91■□□□□ 0.14
COL7A1-210ENST00000487017 RUNDC3AQ59EK9 446 aa15.91■□□□□ 0.14
COL7A1-210ENST00000487017 PLEKHS1Q5SXH7 462 aa15.91■□□□□ 0.14
COL7A1-210ENST00000487017 TCEAL6Q6IPX3 200 aa15.91■□□□□ 0.14
COL7A1-210ENST00000487017 REEP3Q6NUK4 255 aa15.91■□□□□ 0.14
COL7A1-210ENST00000487017 ZNF627Q7L945 461 aa15.91■□□□□ 0.14
COL7A1-210ENST00000487017 NLGN2Q8NFZ4 835 aa15.91■□□□□ 0.14
COL7A1-210ENST00000487017 NDRG2Q9UN36 371 aaKnown RBP15.91■□□□□ 0.14
COL7A1-210ENST00000487017 BAZ2AQ9UIF9 1905 aaKnown RBP15.91■□□□□ 0.14
COL7A1-210ENST00000487017 GBAP04062 536 aa15.91■□□□□ 0.14
COL7A1-210ENST00000487017 ACTR1BP42025 376 aa15.91■□□□□ 0.14
COL7A1-210ENST00000487017 GRIA2P42262 883 aa15.91■□□□□ 0.14
COL7A1-210ENST00000487017 ACTR1AP61163 376 aa15.91■□□□□ 0.14
COL7A1-210ENST00000487017 BTN3A2P78410 334 aa15.91■□□□□ 0.14
COL7A1-210ENST00000487017 SLC3A1Q07837 685 aa15.91■□□□□ 0.14
COL7A1-210ENST00000487017 PCBP2Q15366 365 aaKnown RBP eCLIP15.91■□□□□ 0.14
COL7A1-210ENST00000487017 SDR16C5Q8N3Y7 309 aa15.91■□□□□ 0.14
COL7A1-210ENST00000487017 CARS2Q9HA77 564 aaKnown RBP15.91■□□□□ 0.14
COL7A1-210ENST00000487017 LYARQ9NX58 379 aaKnown RBP15.91■□□□□ 0.14
COL7A1-210ENST00000487017 ST14Q9Y5Y6 855 aa15.91■□□□□ 0.14
COL7A1-210ENST00000487017 DLGAP1O14490 977 aa15.91■□□□□ 0.14
COL7A1-210ENST00000487017 ATF4P18848 351 aaPredicted RBP15.91■□□□□ 0.14
COL7A1-210ENST00000487017 ZNF423Q2M1K9 1284 aa15.91■□□□□ 0.14
COL7A1-210ENST00000487017 TOR1AIP1Q5JTV8 583 aa15.91■□□□□ 0.14
COL7A1-210ENST00000487017 ZNF782Q6ZMW2 699 aaPredicted RBP15.91■□□□□ 0.14
COL7A1-210ENST00000487017 MMAAQ8IVH4 418 aaKnown RBP15.91■□□□□ 0.14
COL7A1-210ENST00000487017 DDX51Q8N8A6 666 aaKnown RBP eCLIP15.91■□□□□ 0.14
COL7A1-210ENST00000487017 OR2AJ1Q8NGZ0 328 aa15.91■□□□□ 0.14
COL7A1-210ENST00000487017 ZNF675Q8TD23 568 aa15.91■□□□□ 0.14
COL7A1-210ENST00000487017 SOX17Q9H6I2 414 aaPredicted RBP15.91■□□□□ 0.14
COL7A1-210ENST00000487017 OARD1Q9Y530 152 aa15.91■□□□□ 0.14
COL7A1-210ENST00000487017 FZD9O00144 591 aa15.91■□□□□ 0.14
COL7A1-210ENST00000487017 SLITRK5O94991 958 aa15.91■□□□□ 0.14
COL7A1-210ENST00000487017 ADH5P11766 374 aa15.91■□□□□ 0.14
COL7A1-210ENST00000487017 IST1P53990 364 aa15.91■□□□□ 0.14
COL7A1-210ENST00000487017 CDKL1Q00532 357 aa15.91■□□□□ 0.14
COL7A1-210ENST00000487017 ZNF367Q7RTV3 350 aa15.91■□□□□ 0.14
COL7A1-210ENST00000487017 UMODL1-AS1Q8N2C9 162 aa15.91■□□□□ 0.14
COL7A1-210ENST00000487017 GOLM1Q8NBJ4 401 aa15.91■□□□□ 0.14
COL7A1-210ENST00000487017 SLC37A3Q8NCC5 494 aa15.91■□□□□ 0.14
COL7A1-210ENST00000487017 PROKR2Q8NFJ6 384 aa15.91■□□□□ 0.14
COL7A1-210ENST00000487017 TFGQ92734 400 aaPredicted RBP15.91■□□□□ 0.14
COL7A1-210ENST00000487017 COQ8BQ96D53 544 aa15.91■□□□□ 0.14
COL7A1-210ENST00000487017 MOCOSQ96EN8 888 aa15.91■□□□□ 0.14
COL7A1-210ENST00000487017 TSSK6Q9BXA6 273 aa15.91■□□□□ 0.14
COL7A1-210ENST00000487017 BTBD1Q9H0C5 482 aa15.91■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms