RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 TRBC2A0A5B9 178 aa7.66□□□□□ -1.18
USP40-216ENST00000485943 ARHGAP10A1A4S6 786 aa7.66□□□□□ -1.18
USP40-216ENST00000485943 CCDC151A5D8V7 595 aa7.66□□□□□ -1.18
USP40-216ENST00000485943 ARGFXA6NJG6 315 aa7.66□□□□□ -1.18
USP40-216ENST00000485943 GOLGA8RI6L899 631 aa7.66□□□□□ -1.18
USP40-216ENST00000485943 COPEO14579 308 aa7.66□□□□□ -1.18
USP40-216ENST00000485943 LCE2BO14633 110 aa7.66□□□□□ -1.18
USP40-216ENST00000485943 MAP2K7O14733 419 aa7.66□□□□□ -1.18
USP40-216ENST00000485943 CTSVO60911 334 aa7.66□□□□□ -1.18
USP40-216ENST00000485943 CDH16O75309 829 aa7.66□□□□□ -1.18
USP40-216ENST00000485943 GLRA3O75311 464 aa7.66□□□□□ -1.18
USP40-216ENST00000485943 STATHP02808 62 aa7.66□□□□□ -1.18
USP40-216ENST00000485943 ITGB2P05107 769 aa7.66□□□□□ -1.18
USP40-216ENST00000485943 GSTA1P08263 222 aa7.66□□□□□ -1.18
USP40-216ENST00000485943 FAM153BP0C7A2 387 aa7.66□□□□□ -1.18
USP40-216ENST00000485943 SLC35E2BP0CK96 405 aa7.66□□□□□ -1.18
USP40-216ENST00000485943 C1GALT1C1LP0DN25 315 aa7.66□□□□□ -1.18
USP40-216ENST00000485943 GSTM2P28161 218 aa7.66□□□□□ -1.18
USP40-216ENST00000485943 OR1D4P47884 311 aa7.66□□□□□ -1.18
USP40-216ENST00000485943 CCNG1P51959 295 aa7.66□□□□□ -1.18
USP40-216ENST00000485943 ALDH18A1P54886 795 aaKnown RBP7.66□□□□□ -1.18
USP40-216ENST00000485943 RPS18P62269 152 aaKnown RBP7.66□□□□□ -1.18
USP40-216ENST00000485943 AP2B1P63010 937 aa7.66□□□□□ -1.18
USP40-216ENST00000485943 IRF9Q00978 393 aa7.66□□□□□ -1.18
USP40-216ENST00000485943 MEF2AQ02078 507 aaPredicted RBP7.66□□□□□ -1.18
USP40-216ENST00000485943 ACTN3Q08043 901 aaPredicted RBP7.66□□□□□ -1.18
USP40-216ENST00000485943 ASPHQ12797 758 aa7.66□□□□□ -1.18
USP40-216ENST00000485943 CHIT1Q13231 466 aa7.66□□□□□ -1.18
USP40-216ENST00000485943 SLBPQ14493 270 aaKnown RBP eCLIP7.66□□□□□ -1.18
USP40-216ENST00000485943 ZKSCAN8Q15776 578 aaPredicted RBP7.66□□□□□ -1.18
USP40-216ENST00000485943 FAM153CQ494X1 144 aa7.66□□□□□ -1.18
USP40-216ENST00000485943 FRMPD2BQ6IN97 320 aa7.66□□□□□ -1.18
USP40-216ENST00000485943 TRIM40Q6P9F5 258 aa7.66□□□□□ -1.18
USP40-216ENST00000485943 TMEM207Q6UWW9 146 aa7.66□□□□□ -1.18
USP40-216ENST00000485943 TMIGD1Q6UXZ0 262 aa7.66□□□□□ -1.18
USP40-216ENST00000485943 TIPARPQ7Z3E1 657 aaKnown RBP7.66□□□□□ -1.18
USP40-216ENST00000485943 CROCCP2Q86T23 111 aa7.66□□□□□ -1.18
USP40-216ENST00000485943 TEX9Q8N6V9 391 aa7.66□□□□□ -1.18
USP40-216ENST00000485943 MFSD9Q8NBP5 474 aa7.66□□□□□ -1.18
USP40-216ENST00000485943 SRFBP1Q8NEF9 429 aaKnown RBP7.66□□□□□ -1.18
USP40-216ENST00000485943 OR56A3Q8NH54 315 aa7.66□□□□□ -1.18
USP40-216ENST00000485943 PPP1R14CQ8TAE6 165 aa7.66□□□□□ -1.18
USP40-216ENST00000485943 RHEBL1Q8TAI7 183 aa7.66□□□□□ -1.18
USP40-216ENST00000485943 EXTL1Q92935 676 aa7.66□□□□□ -1.18
USP40-216ENST00000485943 NEIL2Q969S2 332 aa7.66□□□□□ -1.18
USP40-216ENST00000485943 PTERQ96BW5 349 aa7.66□□□□□ -1.18
USP40-216ENST00000485943 RHBDF1Q96CC6 855 aa7.66□□□□□ -1.18
USP40-216ENST00000485943 CCDC126Q96EE4 140 aa7.66□□□□□ -1.18
USP40-216ENST00000485943 PHF21BQ96EK2 531 aa7.66□□□□□ -1.18
USP40-216ENST00000485943 PTCD3Q96EY7 689 aaKnown RBP7.66□□□□□ -1.18
USP40-216ENST00000485943 MRPL57Q9BQC6 102 aaKnown RBP7.66□□□□□ -1.18
USP40-216ENST00000485943 MENTQ9BUN1 341 aa7.66□□□□□ -1.18
USP40-216ENST00000485943 SGPP1Q9BX95 441 aa7.66□□□□□ -1.18
USP40-216ENST00000485943 GSX2Q9BZM3 304 aa7.66□□□□□ -1.18
USP40-216ENST00000485943 STMN4Q9H169 189 aaPredicted RBP7.66□□□□□ -1.18
USP40-216ENST00000485943 MRPL46Q9H2W6 279 aaKnown RBP7.66□□□□□ -1.18
USP40-216ENST00000485943 RHBGQ9H310 441 aa7.66□□□□□ -1.18
USP40-216ENST00000485943 SOX17Q9H6I2 414 aaPredicted RBP7.66□□□□□ -1.18
USP40-216ENST00000485943 PLAC1Q9HBJ0 212 aa7.66□□□□□ -1.18
USP40-216ENST00000485943 C14orf105Q9NVL8 296 aa7.66□□□□□ -1.18
USP40-216ENST00000485943 ARGLU1Q9NWB6 273 aaPredicted RBP7.66□□□□□ -1.18
USP40-216ENST00000485943 XPR1Q9UBH6 696 aa7.66□□□□□ -1.18
USP40-216ENST00000485943 C19orf25Q9UFG5 118 aaPredicted RBP7.66□□□□□ -1.18
USP40-216ENST00000485943 IL17BQ9UHF5 180 aa7.66□□□□□ -1.18
USP40-216ENST00000485943 DCDC2Q9UHG0 476 aa7.66□□□□□ -1.18
USP40-216ENST00000485943 TCFL5Q9UL49 500 aa7.66□□□□□ -1.18
USP40-216ENST00000485943 RUVBL1Q9Y265 456 aaKnown RBP7.66□□□□□ -1.18
USP40-216ENST00000485943 MRPS33Q9Y291 106 aaKnown RBP7.66□□□□□ -1.18
USP40-216ENST00000485943 STK38LQ9Y2H1 464 aa7.66□□□□□ -1.18
USP40-216ENST00000485943 LOC105369274A0A096LPK9 316 aa7.65□□□□□ -1.18
USP40-216ENST00000485943 A0A0A6YYC8 382 aaPredicted RBP7.65□□□□□ -1.18
USP40-216ENST00000485943 LOC102723532A0A0G2JNH3 316 aa7.65□□□□□ -1.18
USP40-216ENST00000485943 I3L1I5 382 aaPredicted RBP7.65□□□□□ -1.18
USP40-216ENST00000485943 K7EPI3 171 aa7.65□□□□□ -1.18
USP40-216ENST00000485943 NKX2-8O15522 239 aa7.65□□□□□ -1.18
USP40-216ENST00000485943 RFPL1O75677 317 aa7.65□□□□□ -1.18
USP40-216ENST00000485943 TSPAN12O95859 305 aa7.65□□□□□ -1.18
USP40-216ENST00000485943 ALBP02768 609 aa7.65□□□□□ -1.18
USP40-216ENST00000485943 ALPPP05187 535 aa7.65□□□□□ -1.18
USP40-216ENST00000485943 MYL2P10916 166 aa7.65□□□□□ -1.18
USP40-216ENST00000485943 SNRPBP14678 240 aaKnown RBP7.65□□□□□ -1.18
USP40-216ENST00000485943 NPPBP16860 134 aa7.65□□□□□ -1.18
USP40-216ENST00000485943 IL1RNP18510 177 aa7.65□□□□□ -1.18
USP40-216ENST00000485943 JAK1P23458 1154 aa7.65□□□□□ -1.18
USP40-216ENST00000485943 TNFRSF8P28908 595 aa7.65□□□□□ -1.18
USP40-216ENST00000485943 GDF5P43026 501 aa7.65□□□□□ -1.18
USP40-216ENST00000485943 CCL11P51671 97 aa7.65□□□□□ -1.18
USP40-216ENST00000485943 VSNL1P62760 191 aa7.65□□□□□ -1.18
USP40-216ENST00000485943 CSNK1G2P78368 415 aa7.65□□□□□ -1.18
USP40-216ENST00000485943 IFT88Q13099 833 aa7.65□□□□□ -1.18
USP40-216ENST00000485943 SRSF6Q13247 344 aaKnown RBP7.65□□□□□ -1.18
USP40-216ENST00000485943 GTF2H2Q13888 395 aa7.65□□□□□ -1.18
USP40-216ENST00000485943 COL9A2Q14055 689 aaPredicted RBP7.65□□□□□ -1.18
USP40-216ENST00000485943 SSPNQ14714 243 aa7.65□□□□□ -1.18
USP40-216ENST00000485943 OR4D1Q15615 310 aa7.65□□□□□ -1.18
USP40-216ENST00000485943 ERCC6LQ2NKX8 1250 aa7.65□□□□□ -1.18
USP40-216ENST00000485943 HKDC1Q2TB90 917 aa7.65□□□□□ -1.18
USP40-216ENST00000485943 FBXO48Q5FWF7 155 aa7.65□□□□□ -1.18
USP40-216ENST00000485943 TOR1AIP1Q5JTV8 583 aa7.65□□□□□ -1.18
USP40-216ENST00000485943 CATSPEREQ5SY80 951 aa7.65□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms