RNA–Protein interactions for RNA: ENST00000485102.1

HDAC6-227, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-227ENST00000485102 DNAJC13O75165 2243 aa12.25□□□□□ -0.45
HDAC6-227ENST00000485102 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP12.24□□□□□ -0.45
HDAC6-227ENST00000485102 FAM237BA0A1B0GVD1 139 aa12.24□□□□□ -0.45
HDAC6-227ENST00000485102 GABRR3A8MPY1 467 aa12.24□□□□□ -0.45
HDAC6-227ENST00000485102 IL1RNP18510 177 aa12.24□□□□□ -0.45
HDAC6-227ENST00000485102 TAS2R50P59544 299 aa12.24□□□□□ -0.45
HDAC6-227ENST00000485102 SARNPP82979 210 aaKnown RBP12.24□□□□□ -0.45
HDAC6-227ENST00000485102 MEF2AQ02078 507 aaPredicted RBP12.24□□□□□ -0.45
HDAC6-227ENST00000485102 USP10Q14694 798 aaKnown RBP12.24□□□□□ -0.45
HDAC6-227ENST00000485102 NSDHLQ15738 373 aa12.24□□□□□ -0.45
HDAC6-227ENST00000485102 SFT2D3Q587I9 215 aa12.24□□□□□ -0.45
HDAC6-227ENST00000485102 THEMIS2Q5TEJ8 643 aa12.24□□□□□ -0.45
HDAC6-227ENST00000485102 MFSD4BQ5TF39 518 aa12.24□□□□□ -0.45
HDAC6-227ENST00000485102 FCRLBQ6BAA4 426 aa12.24□□□□□ -0.45
HDAC6-227ENST00000485102 NIPAL1Q6NVV3 410 aa12.24□□□□□ -0.45
HDAC6-227ENST00000485102 GALNTL5Q7Z4T8 443 aa12.24□□□□□ -0.45
HDAC6-227ENST00000485102 PDSS2Q86YH6 399 aa12.24□□□□□ -0.45
HDAC6-227ENST00000485102 LMNTD2Q8IXW0 634 aa12.24□□□□□ -0.45
HDAC6-227ENST00000485102 SHISA5Q8N114 240 aa12.24□□□□□ -0.45
HDAC6-227ENST00000485102 RASGEF1CQ8N431 466 aa12.24□□□□□ -0.45
HDAC6-227ENST00000485102 AFAP1L2Q8N4X5 818 aa12.24□□□□□ -0.45
HDAC6-227ENST00000485102 POGLUT1Q8NBL1 392 aa12.24□□□□□ -0.45
HDAC6-227ENST00000485102 KIF18AQ8NI77 898 aa12.24□□□□□ -0.45
HDAC6-227ENST00000485102 AGAP11Q8TF27 550 aa12.24□□□□□ -0.45
HDAC6-227ENST00000485102 GRK7Q8WTQ7 553 aa12.24□□□□□ -0.45
HDAC6-227ENST00000485102 CCDC138Q96M89 665 aa12.24□□□□□ -0.45
HDAC6-227ENST00000485102 HES7Q9BYE0 225 aa12.24□□□□□ -0.45
HDAC6-227ENST00000485102 CCDC177Q9NQR7 707 aaPredicted RBP12.24□□□□□ -0.45
HDAC6-227ENST00000485102 KLHL1Q9NR64 748 aa12.24□□□□□ -0.45
HDAC6-227ENST00000485102 LRFN1Q9P244 771 aa12.24□□□□□ -0.45
HDAC6-227ENST00000485102 ASB1Q9Y576 335 aa12.24□□□□□ -0.45
HDAC6-227ENST00000485102 ITPR3Q14573 2671 aa12.24□□□□□ -0.45
HDAC6-227ENST00000485102 TCRBV7S3A2A0A539 114 aa12.23□□□□□ -0.45
HDAC6-227ENST00000485102 OR2W5A6NFC9 320 aa12.23□□□□□ -0.45
HDAC6-227ENST00000485102 USP27XA6NNY8 438 aa12.23□□□□□ -0.45
HDAC6-227ENST00000485102 FAM227AF5H4B4 570 aa12.23□□□□□ -0.45
HDAC6-227ENST00000485102 SGK494L7N484 410 aa12.23□□□□□ -0.45
HDAC6-227ENST00000485102 NDC80O14777 642 aa12.23□□□□□ -0.45
HDAC6-227ENST00000485102 NME2P1O60361 137 aa12.23□□□□□ -0.45
HDAC6-227ENST00000485102 MAN1A2O60476 641 aa12.23□□□□□ -0.45
HDAC6-227ENST00000485102 SYF2O95926 243 aaKnown RBP12.23□□□□□ -0.45
HDAC6-227ENST00000485102 FGGP02679 453 aa12.23□□□□□ -0.45
HDAC6-227ENST00000485102 MLNP12872 115 aa12.23□□□□□ -0.45
HDAC6-227ENST00000485102 NME2P22392 152 aa12.23□□□□□ -0.45
HDAC6-227ENST00000485102 CCND1P24385 295 aa12.23□□□□□ -0.45
HDAC6-227ENST00000485102 TRHRP34981 398 aaPredicted RBP12.23□□□□□ -0.45
HDAC6-227ENST00000485102 SLC26A5P58743 744 aa12.23□□□□□ -0.45
HDAC6-227ENST00000485102 KRTAP10-9P60411 292 aa12.23□□□□□ -0.45
HDAC6-227ENST00000485102 CKAP4Q07065 602 aaKnown RBP12.23□□□□□ -0.45
HDAC6-227ENST00000485102 ACTN3Q08043 901 aaPredicted RBP12.23□□□□□ -0.45
HDAC6-227ENST00000485102 ABRAXAS2Q15018 415 aa12.23□□□□□ -0.45
HDAC6-227ENST00000485102 HERC3Q15034 1050 aa12.23□□□□□ -0.45
HDAC6-227ENST00000485102 LRRC8EQ6NSJ5 796 aa12.23□□□□□ -0.45
HDAC6-227ENST00000485102 ZNF549Q6P9A3 640 aa12.23□□□□□ -0.45
HDAC6-227ENST00000485102 PNPLA5Q7Z6Z6 429 aaPredicted RBP12.23□□□□□ -0.45
HDAC6-227ENST00000485102 ASPGQ86U10 573 aa12.23□□□□□ -0.45
HDAC6-227ENST00000485102 RPS19BP1Q86WX3 136 aaKnown RBP12.23□□□□□ -0.45
HDAC6-227ENST00000485102 CEP97Q8IW35 865 aa12.23□□□□□ -0.45
HDAC6-227ENST00000485102 KCT2Q8NC54 265 aa12.23□□□□□ -0.45
HDAC6-227ENST00000485102 CD200R1Q8TD46 325 aa12.23□□□□□ -0.45
HDAC6-227ENST00000485102 SLC13A3Q8WWT9 602 aa12.23□□□□□ -0.45
HDAC6-227ENST00000485102 CCDC68Q9H2F9 335 aa12.23□□□□□ -0.45
HDAC6-227ENST00000485102 CLK4Q9HAZ1 481 aaKnown RBP12.23□□□□□ -0.45
HDAC6-227ENST00000485102 ANKRD10Q9NXR5 420 aa12.23□□□□□ -0.45
HDAC6-227ENST00000485102 HCN3Q9P1Z3 774 aa12.23□□□□□ -0.45
HDAC6-227ENST00000485102 ITGB1BP2Q9UKP3 347 aa12.23□□□□□ -0.45
HDAC6-227ENST00000485102 ZCWPW2A0A1B0GU75 182 aa12.22□□□□□ -0.45
HDAC6-227ENST00000485102 CCDC188H7C350 402 aa12.22□□□□□ -0.45
HDAC6-227ENST00000485102 PRRG2O14669 202 aa12.22□□□□□ -0.45
HDAC6-227ENST00000485102 LCMT2O60294 686 aaKnown RBP12.22□□□□□ -0.45
HDAC6-227ENST00000485102 RDH16O75452 317 aa12.22□□□□□ -0.45
HDAC6-227ENST00000485102 SLC25A12O75746 678 aa12.22□□□□□ -0.45
HDAC6-227ENST00000485102 KRT38O76015 456 aa12.22□□□□□ -0.45
HDAC6-227ENST00000485102 TSPAN12O95859 305 aa12.22□□□□□ -0.45
HDAC6-227ENST00000485102 ABOP16442 354 aa12.22□□□□□ -0.45
HDAC6-227ENST00000485102 IGFBP2P18065 325 aa12.22□□□□□ -0.45
HDAC6-227ENST00000485102 GRK3P35626 688 aa12.22□□□□□ -0.45
HDAC6-227ENST00000485102 TBPL1P62380 186 aa12.22□□□□□ -0.45
HDAC6-227ENST00000485102 OC90Q02509 493 aaPredicted RBP12.22□□□□□ -0.45
HDAC6-227ENST00000485102 PWP1Q13610 501 aa12.22□□□□□ -0.45
HDAC6-227ENST00000485102 CUL1Q13616 776 aa12.22□□□□□ -0.45
HDAC6-227ENST00000485102 DHX34Q14147 1143 aaKnown RBP12.22□□□□□ -0.45
HDAC6-227ENST00000485102 RNFT1Q5M7Z0 435 aa12.22□□□□□ -0.45
HDAC6-227ENST00000485102 ZNF470Q6ECI4 717 aa12.22□□□□□ -0.45
HDAC6-227ENST00000485102 CAPN13Q6MZZ7 669 aaPredicted RBP12.22□□□□□ -0.45
HDAC6-227ENST00000485102 UBE2R2Q712K3 238 aaPredicted RBP12.22□□□□□ -0.45
HDAC6-227ENST00000485102 GSTA5Q7RTV2 222 aa12.22□□□□□ -0.45
HDAC6-227ENST00000485102 STRA8Q7Z7C7 330 aa12.22□□□□□ -0.45
HDAC6-227ENST00000485102 CAND1Q86VP6 1230 aaKnown RBP12.22□□□□□ -0.45
HDAC6-227ENST00000485102 SLC26A11Q86WA9 606 aa12.22□□□□□ -0.45
HDAC6-227ENST00000485102 C17orf64Q86WR6 236 aa12.22□□□□□ -0.45
HDAC6-227ENST00000485102 ZNF227Q86WZ6 799 aa12.22□□□□□ -0.45
HDAC6-227ENST00000485102 ABHD11Q8NFV4 315 aa12.22□□□□□ -0.45
HDAC6-227ENST00000485102 OR4K1Q8NGD4 311 aa12.22□□□□□ -0.45
HDAC6-227ENST00000485102 CHTF18Q8WVB6 975 aa12.22□□□□□ -0.45
HDAC6-227ENST00000485102 TBC1D20Q96BZ9 403 aa12.22□□□□□ -0.45
HDAC6-227ENST00000485102 MACROD1Q9BQ69 325 aa12.22□□□□□ -0.45
HDAC6-227ENST00000485102 SGPP1Q9BX95 441 aa12.22□□□□□ -0.45
HDAC6-227ENST00000485102 TSPAN10Q9H1Z9 355 aaPredicted RBP12.22□□□□□ -0.45
HDAC6-227ENST00000485102 CDCP1Q9H5V8 836 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms