RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 IL11RAQ14626 422 aa11.67□□□□□ -0.54
SDC1-206ENST00000482879 PDCD2Q16342 344 aaPredicted RBP11.67□□□□□ -0.54
SDC1-206ENST00000482879 HKDC1Q2TB90 917 aa11.67□□□□□ -0.54
SDC1-206ENST00000482879 TOR1AIP1Q5JTV8 583 aa11.67□□□□□ -0.54
SDC1-206ENST00000482879 MANEAQ5SRI9 462 aa11.67□□□□□ -0.54
SDC1-206ENST00000482879 TLDC1Q6P9B6 456 aa11.67□□□□□ -0.54
SDC1-206ENST00000482879 CYB5D1Q6P9G0 228 aa11.67□□□□□ -0.54
SDC1-206ENST00000482879 FOXR1Q6PIV2 292 aa11.67□□□□□ -0.54
SDC1-206ENST00000482879 CHSY3Q70JA7 882 aa11.67□□□□□ -0.54
SDC1-206ENST00000482879 TMPRSS7Q7RTY8 843 aa11.67□□□□□ -0.54
SDC1-206ENST00000482879 BPHLQ86WA6 291 aaPredicted RBP11.67□□□□□ -0.54
SDC1-206ENST00000482879 DDIASQ8IXT1 998 aa11.67□□□□□ -0.54
SDC1-206ENST00000482879 LRRC34Q8IZ02 419 aa11.67□□□□□ -0.54
SDC1-206ENST00000482879 GPR135Q8IZ08 494 aa11.67□□□□□ -0.54
SDC1-206ENST00000482879 BMPERQ8N8U9 685 aa11.67□□□□□ -0.54
SDC1-206ENST00000482879 TTC29Q8NA56 475 aaPredicted RBP11.67□□□□□ -0.54
SDC1-206ENST00000482879 OR8K5Q8NH50 307 aa11.67□□□□□ -0.54
SDC1-206ENST00000482879 WDR36Q8NI36 951 aaKnown RBP11.67□□□□□ -0.54
SDC1-206ENST00000482879 PIWIL2Q8TC59 973 aaKnown RBP11.67□□□□□ -0.54
SDC1-206ENST00000482879 NT5CQ8TCD5 201 aa11.67□□□□□ -0.54
SDC1-206ENST00000482879 CMTM7Q96FZ5 175 aa11.67□□□□□ -0.54
SDC1-206ENST00000482879 HBEGFQ99075 208 aa11.67□□□□□ -0.54
SDC1-206ENST00000482879 MS4A8Q9BY19 250 aa11.67□□□□□ -0.54
SDC1-206ENST00000482879 OR51B5Q9H339 312 aa11.67□□□□□ -0.54
SDC1-206ENST00000482879 TUBB1Q9H4B7 451 aa11.67□□□□□ -0.54
SDC1-206ENST00000482879 APMAPQ9HDC9 416 aa11.67□□□□□ -0.54
SDC1-206ENST00000482879 PFDN4Q9NQP4 134 aa11.67□□□□□ -0.54
SDC1-206ENST00000482879 FBXO8Q9NRD0 319 aa11.67□□□□□ -0.54
SDC1-206ENST00000482879 FGFR1OP2Q9NVK5 253 aa11.67□□□□□ -0.54
SDC1-206ENST00000482879 PSD3Q9NYI0 1048 aa11.67□□□□□ -0.54
SDC1-206ENST00000482879 VTI1BQ9UEU0 232 aa11.67□□□□□ -0.54
SDC1-206ENST00000482879 PISDQ9UG56 409 aa11.67□□□□□ -0.54
SDC1-206ENST00000482879 RUVBL1Q9Y265 456 aaKnown RBP11.67□□□□□ -0.54
SDC1-206ENST00000482879 SERTM1A2A2V5 107 aa11.66□□□□□ -0.54
SDC1-206ENST00000482879 LRIT2A6NDA9 550 aa11.66□□□□□ -0.54
SDC1-206ENST00000482879 URADA6NGE7 173 aa11.66□□□□□ -0.54
SDC1-206ENST00000482879 SLC28A1O00337 649 aa11.66□□□□□ -0.54
SDC1-206ENST00000482879 PLD2O14939 933 aa11.66□□□□□ -0.54
SDC1-206ENST00000482879 PIP5K1BO14986 540 aa11.66□□□□□ -0.54
SDC1-206ENST00000482879 HDAC3O15379 428 aa11.66□□□□□ -0.54
SDC1-206ENST00000482879 ZSCAN9O15535 394 aaPredicted RBP11.66□□□□□ -0.54
SDC1-206ENST00000482879 TBX6O95947 436 aaPredicted RBP11.66□□□□□ -0.54
SDC1-206ENST00000482879 FGF5P12034 268 aa11.66□□□□□ -0.54
SDC1-206ENST00000482879 HSD3B1P14060 373 aa11.66□□□□□ -0.54
SDC1-206ENST00000482879 ITIH1P19827 911 aa11.66□□□□□ -0.54
SDC1-206ENST00000482879 HSD3B2P26439 372 aa11.66□□□□□ -0.54
SDC1-206ENST00000482879 LSP1P33241 339 aa11.66□□□□□ -0.54
SDC1-206ENST00000482879 ETV5P41161 510 aa11.66□□□□□ -0.54
SDC1-206ENST00000482879 HK2P52789 917 aa11.66□□□□□ -0.54
SDC1-206ENST00000482879 STXBP1P61764 594 aaKnown RBP11.66□□□□□ -0.54
SDC1-206ENST00000482879 BTKQ06187 659 aa11.66□□□□□ -0.54
SDC1-206ENST00000482879 HYAL2Q12891 473 aa11.66□□□□□ -0.54
SDC1-206ENST00000482879 CSTF3Q12996 717 aaKnown RBP11.66□□□□□ -0.54
SDC1-206ENST00000482879 GRM7Q14831 915 aa11.66□□□□□ -0.54
SDC1-206ENST00000482879 IMPG1Q17R60 797 aa11.66□□□□□ -0.54
SDC1-206ENST00000482879 PRTGQ2VWP7 1150 aa11.66□□□□□ -0.54
SDC1-206ENST00000482879 TUBB8Q3ZCM7 444 aa11.66□□□□□ -0.54
SDC1-206ENST00000482879 C3orf38Q5JPI3 329 aa11.66□□□□□ -0.54
SDC1-206ENST00000482879 DEPDC1Q5TB30 811 aa11.66□□□□□ -0.54
SDC1-206ENST00000482879 DGLUCYQ7Z3D6 616 aa11.66□□□□□ -0.54
SDC1-206ENST00000482879 TRIM46Q7Z4K8 759 aa11.66□□□□□ -0.54
SDC1-206ENST00000482879 MTERF4Q7Z6M4 381 aaKnown RBP11.66□□□□□ -0.54
SDC1-206ENST00000482879 PPP1R3BQ86XI6 285 aa11.66□□□□□ -0.54
SDC1-206ENST00000482879 WDR75Q8IWA0 830 aaKnown RBP11.66□□□□□ -0.54
SDC1-206ENST00000482879 GBP7Q8N8V2 638 aaPredicted RBP11.66□□□□□ -0.54
SDC1-206ENST00000482879 KCT2Q8NC54 265 aa11.66□□□□□ -0.54
SDC1-206ENST00000482879 CHMP6Q96FZ7 201 aa11.66□□□□□ -0.54
SDC1-206ENST00000482879 ZNF317Q96PQ6 595 aaPredicted RBP11.66□□□□□ -0.54
SDC1-206ENST00000482879 F2RL3Q96RI0 385 aa11.66□□□□□ -0.54
SDC1-206ENST00000482879 SERPINI1Q99574 410 aa11.66□□□□□ -0.54
SDC1-206ENST00000482879 CTRCQ99895 268 aa11.66□□□□□ -0.54
SDC1-206ENST00000482879 ACPTQ9BZG2 426 aa11.66□□□□□ -0.54
SDC1-206ENST00000482879 SLC6A16Q9GZN6 736 aa11.66□□□□□ -0.54
SDC1-206ENST00000482879 KLHL31Q9H511 634 aa11.66□□□□□ -0.54
SDC1-206ENST00000482879 BRF2Q9HAW0 419 aa11.66□□□□□ -0.54
SDC1-206ENST00000482879 NMRK1Q9NWW6 199 aa11.66□□□□□ -0.54
SDC1-206ENST00000482879 ADAM21Q9UKJ8 722 aa11.66□□□□□ -0.54
SDC1-206ENST00000482879 PPT2Q9UMR5 302 aa11.66□□□□□ -0.54
SDC1-206ENST00000482879 SLC12A4Q9UP95 1085 aa11.66□□□□□ -0.54
SDC1-206ENST00000482879 SATB2Q9UPW6 733 aa11.66□□□□□ -0.54
SDC1-206ENST00000482879 PTGDR2Q9Y5Y4 395 aa11.66□□□□□ -0.54
SDC1-206ENST00000482879 CROCCQ5TZA2 2017 aa11.65□□□□□ -0.54
SDC1-206ENST00000482879 SPEGQ15772 3267 aa11.65□□□□□ -0.54
SDC1-206ENST00000482879 FER1L5A0AVI2 2057 aa11.65□□□□□ -0.54
SDC1-206ENST00000482879 A0A1W2PNU3 283 aaPredicted RBP11.65□□□□□ -0.54
SDC1-206ENST00000482879 HYKKA2RU49 373 aa11.65□□□□□ -0.54
SDC1-206ENST00000482879 PMS2P1A4D2B8 440 aa11.65□□□□□ -0.54
SDC1-206ENST00000482879 FITM1A5D6W6 292 aa11.65□□□□□ -0.54
SDC1-206ENST00000482879 TRPC5OSA6NMA1 111 aa11.65□□□□□ -0.54
SDC1-206ENST00000482879 H3BMH7 237 aa11.65□□□□□ -0.54
SDC1-206ENST00000482879 SAP18O00422 153 aaKnown RBP11.65□□□□□ -0.54
SDC1-206ENST00000482879 ZNF749O43361 778 aa11.65□□□□□ -0.54
SDC1-206ENST00000482879 RGS14O43566 566 aa11.65□□□□□ -0.54
SDC1-206ENST00000482879 ETHE1O95571 254 aa11.65□□□□□ -0.54
SDC1-206ENST00000482879 JUNP05412 331 aaKnown RBP11.65□□□□□ -0.54
SDC1-206ENST00000482879 HNRNPH1P31943 449 aaKnown RBP11.65□□□□□ -0.54
SDC1-206ENST00000482879 ID4P47928 161 aa11.65□□□□□ -0.54
SDC1-206ENST00000482879 RAP1GDS1P52306 607 aa11.65□□□□□ -0.54
SDC1-206ENST00000482879 RAB15P59190 212 aa11.65□□□□□ -0.54
SDC1-206ENST00000482879 HMGCS1Q01581 520 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms