RNA–Protein interactions for RNA: ENST00000474871.5

NPHP3-206, Transcript of nephrocystin 3, humanhuman

TSL 2

Gene NPHP3, Length 4,493 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-206ENST00000474871 TMEM56Q96MV1 263 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 ZNF577Q9BSK1 485 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 MED18Q9BUE0 208 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 EPHX3Q9H6B9 360 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 DMRT3Q9NQL9 472 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 SEPT9Q9UHD8 586 aaPredicted RBP4.7□□□□□ -1.66
NPHP3-206ENST00000474871 TMEM56-RWDD3S4R434 201 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 POTEB3A0JP26 581 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 FAM92AA1XBS5 289 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 SLC25A27O95847 323 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 PFKFB1P16118 471 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 ERCC2P18074 760 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 OGNP20774 298 aaKnown RBP4.7□□□□□ -1.66
NPHP3-206ENST00000474871 IMPDH1P20839 514 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 BDKRB2P30411 391 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 HOXA13P31271 388 aaPredicted RBP4.7□□□□□ -1.66
NPHP3-206ENST00000474871 TGM4P49221 684 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 SLC1A5Q15758 541 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 NPY5RQ15761 445 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 RFX4Q33E94 735 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 NOMO2Q5JPE7 1267 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 FGD3Q5JSP0 725 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 EOGTQ5NDL2 527 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 PRAMEF19Q5SWL8 479 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 CDC42EP5Q6NZY7 148 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 POTEBQ6S5H4 581 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 RNF207Q6ZRF8 634 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 SLC16A14Q7RTX9 510 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 APTXQ7Z2E3 356 aaKnown RBP4.7□□□□□ -1.66
NPHP3-206ENST00000474871 SLC46A3Q7Z3Q1 461 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 DDX53Q86TM3 631 aaKnown RBP4.7□□□□□ -1.66
NPHP3-206ENST00000474871 GPBP1Q86WP2 473 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 SIX6OS1Q8N1H7 587 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 GPR137CQ8N3F9 429 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 RNF152Q8N8N0 203 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 LARP4BQ92615 738 aaKnown RBP4.7□□□□□ -1.66
NPHP3-206ENST00000474871 TMCO6Q96DC7 493 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 BSCL2Q96G97 398 aaPredicted RBP4.7□□□□□ -1.66
NPHP3-206ENST00000474871 SH3YL1Q96HL8 342 aaPredicted RBP4.7□□□□□ -1.66
NPHP3-206ENST00000474871 NECTIN4Q96NY8 510 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 TEAD3Q99594 435 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 KCNS3Q9BQ31 491 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 TMEM47Q9BQJ4 181 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 TMEM208Q9BTX3 173 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 PRRG3Q9BZD7 231 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 ZMYND12Q9H0C1 365 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 WDR55Q9H6Y2 383 aaPredicted RBP4.7□□□□□ -1.66
NPHP3-206ENST00000474871 NOL11Q9H8H0 719 aaKnown RBP4.7□□□□□ -1.66
NPHP3-206ENST00000474871 COG4Q9H9E3 785 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 SPASTQ9UBP0 616 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 ARMCX3Q9UH62 379 aaPredicted RBP4.7□□□□□ -1.66
NPHP3-206ENST00000474871 GPN3Q9UHW5 284 aaPredicted RBP4.7□□□□□ -1.66
NPHP3-206ENST00000474871 DNPEPQ9ULA0 475 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 PCDHA4Q9UN74 947 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 RNF11Q9Y3C5 154 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 GNG14A0A1W2PPG7 69 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 TCRBV21S2A2A0A5A6 115 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 PP2D1A8MPX8 630 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 PSMD12O00232 456 aaPredicted RBP4.7□□□□□ -1.66
NPHP3-206ENST00000474871 SYT5O00445 386 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 TNFRSF13BO14836 293 aaPredicted RBP4.7□□□□□ -1.66
NPHP3-206ENST00000474871 SMAD7O15105 426 aaKnown RBP4.7□□□□□ -1.66
NPHP3-206ENST00000474871 ENTPD3O75355 529 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 MTX2O75431 263 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 CA11O75493 328 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 CCNE2O96020 404 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 THP07101 528 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 BRAFP15056 766 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 PAMP19021 973 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 PBX1P40424 430 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 MAGEA1P43355 309 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 CSNK1G2P78368 415 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 SHC2P98077 582 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 SPOCK1Q08629 439 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 LRRC32Q14392 662 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 TYW3Q6IPR3 259 aaKnown RBP4.7□□□□□ -1.66
NPHP3-206ENST00000474871 SHC4Q6S5L8 630 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 BBS12Q6ZW61 710 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 SSX9Q7RTT3 188 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 C16orf62Q7Z3J2 963 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 GCNT2Q8N0V5 402 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 ZNF784Q8NCA9 323 aaPredicted RBP4.7□□□□□ -1.66
NPHP3-206ENST00000474871 STEAP2Q8NFT2 490 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 MRGPRDQ8TDS7 321 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 HSD17B8Q92506 261 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 LPAR1Q92633 364 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 RIT1Q92963 219 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 PEX11GQ96HA9 241 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 GLT1D1Q96MS3 346 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 ZNF599Q96NL3 588 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 LRRC1Q9BTT6 524 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 SPHK2Q9NRA0 654 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 PPM1HQ9ULR3 514 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 TRIM49BA6NDI0 452 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 E9PAM4 449 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 H3BNX3 289 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 ERN1O75460 977 aaKnown RBP4.7□□□□□ -1.66
NPHP3-206ENST00000474871 APOL3O95236 402 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 KRT8P05787 483 aa4.7□□□□□ -1.66
NPHP3-206ENST00000474871 ADH1AP07327 375 aa4.7□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms