RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 PYROXD1Q8WU10 500 aa14.85□□□□□ -0.03
CCDC88B-205ENST00000472524 PSMF1Q92530 271 aa14.85□□□□□ -0.03
CCDC88B-205ENST00000472524 NEIL2Q969S2 332 aa14.85□□□□□ -0.03
CCDC88B-205ENST00000472524 MOCOSQ96EN8 888 aa14.85□□□□□ -0.03
CCDC88B-205ENST00000472524 VPS39Q96JC1 886 aa14.85□□□□□ -0.03
CCDC88B-205ENST00000472524 LMF1Q96S06 567 aa14.85□□□□□ -0.03
CCDC88B-205ENST00000472524 EGFL8Q99944 293 aa14.85□□□□□ -0.03
CCDC88B-205ENST00000472524 FAM129AQ9BZQ8 928 aa14.85□□□□□ -0.03
CCDC88B-205ENST00000472524 SPNS1Q9H2V7 528 aa14.85□□□□□ -0.03
CCDC88B-205ENST00000472524 RHOJQ9H4E5 214 aa14.85□□□□□ -0.03
CCDC88B-205ENST00000472524 SAYSD1Q9NPB0 183 aa14.85□□□□□ -0.03
CCDC88B-205ENST00000472524 SMYD2Q9NRG4 433 aa14.85□□□□□ -0.03
CCDC88B-205ENST00000472524 AGPAT4Q9NRZ5 378 aa14.85□□□□□ -0.03
CCDC88B-205ENST00000472524 NSMCE4AQ9NXX6 385 aa14.85□□□□□ -0.03
CCDC88B-205ENST00000472524 PLA2G3Q9NZ20 509 aa14.85□□□□□ -0.03
CCDC88B-205ENST00000472524 DYRK1BQ9Y463 629 aa14.85□□□□□ -0.03
CCDC88B-205ENST00000472524 CENPEQ02224 2701 aa14.85□□□□□ -0.03
CCDC88B-205ENST00000472524 TRBC2A0A5B9 178 aa14.84□□□□□ -0.03
CCDC88B-205ENST00000472524 DYTNA2CJ06 578 aa14.84□□□□□ -0.03
CCDC88B-205ENST00000472524 FAM187AA6NFU0 413 aa14.84□□□□□ -0.03
CCDC88B-205ENST00000472524 CDC123O75794 336 aaPredicted RBP14.84□□□□□ -0.03
CCDC88B-205ENST00000472524 F10P00742 488 aa14.84□□□□□ -0.03
CCDC88B-205ENST00000472524 SSTR1P30872 391 aa14.84□□□□□ -0.03
CCDC88B-205ENST00000472524 SOX11P35716 441 aa14.84□□□□□ -0.03
CCDC88B-205ENST00000472524 B3GNTL1Q67FW5 361 aaPredicted RBP14.84□□□□□ -0.03
CCDC88B-205ENST00000472524 RIPOR1Q6ZS17 1223 aa14.84□□□□□ -0.03
CCDC88B-205ENST00000472524 FRA10AC1Q70Z53 315 aa14.84□□□□□ -0.03
CCDC88B-205ENST00000472524 CPEB2Q7Z5Q1 589 aaKnown RBP14.84□□□□□ -0.03
CCDC88B-205ENST00000472524 THOC6Q86W42 341 aaKnown RBP14.84□□□□□ -0.03
CCDC88B-205ENST00000472524 CEP97Q8IW35 865 aa14.84□□□□□ -0.03
CCDC88B-205ENST00000472524 SPATA4Q8NEY3 305 aa14.84□□□□□ -0.03
CCDC88B-205ENST00000472524 OR4K1Q8NGD4 311 aa14.84□□□□□ -0.03
CCDC88B-205ENST00000472524 OR5T3Q8NGG3 340 aa14.84□□□□□ -0.03
CCDC88B-205ENST00000472524 OR1N1Q8NGS0 311 aa14.84□□□□□ -0.03
CCDC88B-205ENST00000472524 GRHL3Q8TE85 626 aa14.84□□□□□ -0.03
CCDC88B-205ENST00000472524 ANKRD49Q8WVL7 239 aa14.84□□□□□ -0.03
CCDC88B-205ENST00000472524 PEX11GQ96HA9 241 aa14.84□□□□□ -0.03
CCDC88B-205ENST00000472524 CYTH2Q99418 400 aa14.84□□□□□ -0.03
CCDC88B-205ENST00000472524 ERP44Q9BS26 406 aa14.84□□□□□ -0.03
CCDC88B-205ENST00000472524 TUBB6Q9BUF5 446 aa14.84□□□□□ -0.03
CCDC88B-205ENST00000472524 UNKQ9C0B0 810 aaKnown RBP14.84□□□□□ -0.03
CCDC88B-205ENST00000472524 WHRNQ9P202 907 aa14.84□□□□□ -0.03
CCDC88B-205ENST00000472524 CTNNAL1Q9UBT7 734 aa14.84□□□□□ -0.03
CCDC88B-205ENST00000472524 C19orf25Q9UFG5 118 aaPredicted RBP14.84□□□□□ -0.03
CCDC88B-205ENST00000472524 SLC22A14Q9Y267 594 aa14.84□□□□□ -0.03
CCDC88B-205ENST00000472524 B3GALT4O96024 378 aa14.83□□□□□ -0.04
CCDC88B-205ENST00000472524 CASQ1P31415 396 aa14.83□□□□□ -0.04
CCDC88B-205ENST00000472524 SLC12A2P55011 1212 aa14.83□□□□□ -0.04
CCDC88B-205ENST00000472524 AP2B1P63010 937 aa14.83□□□□□ -0.04
CCDC88B-205ENST00000472524 OLR1P78380 273 aa14.83□□□□□ -0.04
CCDC88B-205ENST00000472524 REEP5Q00765 189 aa14.83□□□□□ -0.04
CCDC88B-205ENST00000472524 RGS1Q08116 209 aa14.83□□□□□ -0.04
CCDC88B-205ENST00000472524 HERC3Q15034 1050 aa14.83□□□□□ -0.04
CCDC88B-205ENST00000472524 TSNQ15631 228 aaKnown RBP14.83□□□□□ -0.04
CCDC88B-205ENST00000472524 MAATS1Q7Z4T9 603 aa14.83□□□□□ -0.04
CCDC88B-205ENST00000472524 IMMP1LQ96LU5 166 aa14.83□□□□□ -0.04
CCDC88B-205ENST00000472524 MAGEB10Q96LZ2 347 aaPredicted RBP14.83□□□□□ -0.04
CCDC88B-205ENST00000472524 SARGQ9BW04 601 aa14.83□□□□□ -0.04
CCDC88B-205ENST00000472524 CAB39LQ9H9S4 337 aa14.83□□□□□ -0.04
CCDC88B-205ENST00000472524 PELI2Q9HAT8 420 aa14.83□□□□□ -0.04
CCDC88B-205ENST00000472524 GPAMQ9HCL2 828 aa14.83□□□□□ -0.04
CCDC88B-205ENST00000472524 OARD1Q9Y530 152 aa14.83□□□□□ -0.04
CCDC88B-205ENST00000472524 SLC22A7Q9Y694 548 aa14.83□□□□□ -0.04
CCDC88B-205ENST00000472524 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP14.83□□□□□ -0.04
CCDC88B-205ENST00000472524 MYO7BQ6PIF6 2116 aa14.83□□□□□ -0.04
CCDC88B-205ENST00000472524 CRYBG3Q68DQ2 2970 aa14.82□□□□□ -0.04
CCDC88B-205ENST00000472524 CXorf49A8MYA2 514 aaPredicted RBP14.82□□□□□ -0.04
CCDC88B-205ENST00000472524 E2F3O00716 465 aa14.82□□□□□ -0.04
CCDC88B-205ENST00000472524 CYC1P08574 325 aa14.82□□□□□ -0.04
CCDC88B-205ENST00000472524 ZNF888P0CJ79 500 aaPredicted RBP14.82□□□□□ -0.04
CCDC88B-205ENST00000472524 ICAM2P13598 275 aa14.82□□□□□ -0.04
CCDC88B-205ENST00000472524 ALOX12P18054 663 aa14.82□□□□□ -0.04
CCDC88B-205ENST00000472524 HNF4AP41235 474 aa14.82□□□□□ -0.04
CCDC88B-205ENST00000472524 SCTRP47872 440 aa14.82□□□□□ -0.04
CCDC88B-205ENST00000472524 PWP1Q13610 501 aa14.82□□□□□ -0.04
CCDC88B-205ENST00000472524 BTBD16Q32M84 506 aa14.82□□□□□ -0.04
CCDC88B-205ENST00000472524 C18orf21Q32NC0 220 aaPredicted RBP14.82□□□□□ -0.04
CCDC88B-205ENST00000472524 DEFB134Q4QY38 66 aa14.82□□□□□ -0.04
CCDC88B-205ENST00000472524 NXPE4Q6UWF7 544 aa14.82□□□□□ -0.04
CCDC88B-205ENST00000472524 FAM180AQ6UWF9 173 aa14.82□□□□□ -0.04
CCDC88B-205ENST00000472524 ANKRD37Q7Z713 158 aa14.82□□□□□ -0.04
CCDC88B-205ENST00000472524 ADAMTSL2Q86TH1 951 aa14.82□□□□□ -0.04
CCDC88B-205ENST00000472524 AFAP1L2Q8N4X5 818 aa14.82□□□□□ -0.04
CCDC88B-205ENST00000472524 ST6GALNAC3Q8NDV1 305 aa14.82□□□□□ -0.04
CCDC88B-205ENST00000472524 CDKL2Q92772 493 aa14.82□□□□□ -0.04
CCDC88B-205ENST00000472524 AIF1LQ9BQI0 150 aa14.82□□□□□ -0.04
CCDC88B-205ENST00000472524 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP14.82□□□□□ -0.04
CCDC88B-205ENST00000472524 GRHL1Q9NZI5 618 aa14.82□□□□□ -0.04
CCDC88B-205ENST00000472524 TXNDC16Q9P2K2 825 aa14.82□□□□□ -0.04
CCDC88B-205ENST00000472524 ZFP69BQ9UJL9 534 aa14.82□□□□□ -0.04
CCDC88B-205ENST00000472524 MTO1Q9Y2Z2 717 aaKnown RBP14.82□□□□□ -0.04
CCDC88B-205ENST00000472524 CTAGE15A4D2H0 777 aa14.81□□□□□ -0.04
CCDC88B-205ENST00000472524 NCF1BA6NI72 391 aaPredicted RBP14.81□□□□□ -0.04
CCDC88B-205ENST00000472524 A8MUI8 341 aa14.81□□□□□ -0.04
CCDC88B-205ENST00000472524 NCF1CA8MVU1 366 aaPredicted RBP14.81□□□□□ -0.04
CCDC88B-205ENST00000472524 EIF3HO15372 352 aaKnown RBP eCLIP14.81□□□□□ -0.04
CCDC88B-205ENST00000472524 PHGDHO43175 533 aaKnown RBP14.81□□□□□ -0.04
CCDC88B-205ENST00000472524 GALR3O60755 368 aaPredicted RBP14.81□□□□□ -0.04
CCDC88B-205ENST00000472524 WDR47O94967 919 aa14.81□□□□□ -0.04
CCDC88B-205ENST00000472524 WDPCPO95876 746 aa14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms