RNA–Protein interactions for RNA: ENST00000463622.6

SCFD1-204, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 1,943 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-204ENST00000463622 RFTN1Q14699 578 aaPredicted RBP3.53□□□□□ -1.84
SCFD1-204ENST00000463622 TPSAB1Q15661 275 aa3.53□□□□□ -1.84
SCFD1-204ENST00000463622 ETFDHQ16134 617 aa3.53□□□□□ -1.84
SCFD1-204ENST00000463622 KRTAP21-3Q3LHN1 58 aa3.53□□□□□ -1.84
SCFD1-204ENST00000463622 TEDDM1Q5T9Z0 273 aa3.53□□□□□ -1.84
SCFD1-204ENST00000463622 KCTD16Q68DU8 428 aa3.53□□□□□ -1.84
SCFD1-204ENST00000463622 SLC2A7Q6PXP3 512 aa3.53□□□□□ -1.84
SCFD1-204ENST00000463622 RANBP10Q6VN20 620 aa3.53□□□□□ -1.84
SCFD1-204ENST00000463622 Q6ZSR6 202 aa3.53□□□□□ -1.84
SCFD1-204ENST00000463622 RAB11FIP2Q7L804 512 aa3.53□□□□□ -1.84
SCFD1-204ENST00000463622 SLC22A18ASQ8N1D0 253 aa3.53□□□□□ -1.84
SCFD1-204ENST00000463622 RYBPQ8N488 228 aaPredicted RBP3.53□□□□□ -1.84
SCFD1-204ENST00000463622 TTC30BQ8N4P2 665 aa3.53□□□□□ -1.84
SCFD1-204ENST00000463622 SLC15A4Q8N697 577 aa3.53□□□□□ -1.84
SCFD1-204ENST00000463622 PCDH20Q8N6Y1 951 aaKnown RBP3.53□□□□□ -1.84
SCFD1-204ENST00000463622 PNLDC1Q8NA58 520 aaKnown RBP3.53□□□□□ -1.84
SCFD1-204ENST00000463622 OR13C4Q8NGS5 318 aa3.53□□□□□ -1.84
SCFD1-204ENST00000463622 GRK7Q8WTQ7 553 aa3.53□□□□□ -1.84
SCFD1-204ENST00000463622 PDCD6IPQ8WUM4 868 aaKnown RBP3.53□□□□□ -1.84
SCFD1-204ENST00000463622 C1GALT1C1Q96EU7 318 aa3.53□□□□□ -1.84
SCFD1-204ENST00000463622 TBL1YQ9BQ87 522 aa3.53□□□□□ -1.84
SCFD1-204ENST00000463622 RETREG1Q9H6L5 497 aa3.53□□□□□ -1.84
SCFD1-204ENST00000463622 CXorf36Q9H7Y0 433 aa3.53□□□□□ -1.84
SCFD1-204ENST00000463622 UGT1A7Q9HAW7 530 aa3.53□□□□□ -1.84
SCFD1-204ENST00000463622 UGT1A10Q9HAW8 530 aa3.53□□□□□ -1.84
SCFD1-204ENST00000463622 UGT1A8Q9HAW9 530 aa3.53□□□□□ -1.84
SCFD1-204ENST00000463622 TCF7L1Q9HCS4 588 aa3.53□□□□□ -1.84
SCFD1-204ENST00000463622 PREBQ9HCU5 417 aa3.53□□□□□ -1.84
SCFD1-204ENST00000463622 HOMER3Q9NSC5 361 aa3.53□□□□□ -1.84
SCFD1-204ENST00000463622 ZNF446Q9NWS9 450 aa3.53□□□□□ -1.84
SCFD1-204ENST00000463622 NINJ2Q9NZG7 142 aa3.53□□□□□ -1.84
SCFD1-204ENST00000463622 HPCAL4Q9UM19 191 aa3.53□□□□□ -1.84
SCFD1-204ENST00000463622 SHOC2Q9UQ13 582 aa3.53□□□□□ -1.84
SCFD1-204ENST00000463622 CHMP2BQ9UQN3 213 aa3.53□□□□□ -1.84
SCFD1-204ENST00000463622 ARL5AQ9Y689 179 aa3.53□□□□□ -1.84
SCFD1-204ENST00000463622 POLQO75417 2590 aa3.53□□□□□ -1.84
SCFD1-204ENST00000463622 LRBAP50851 2863 aa3.53□□□□□ -1.84
SCFD1-204ENST00000463622 C2CD3Q4AC94 2353 aa3.52□□□□□ -1.85
SCFD1-204ENST00000463622 SPTY2D1-AS1A0A0U1RR47 76 aa3.52□□□□□ -1.85
SCFD1-204ENST00000463622 TSPAN11A1L157 253 aa3.52□□□□□ -1.85
SCFD1-204ENST00000463622 C16orf96A6NNT2 1141 aa3.52□□□□□ -1.85
SCFD1-204ENST00000463622 GOLGA8KD6RF30 607 aa3.52□□□□□ -1.85
SCFD1-204ENST00000463622 GOLGA8TH3BQL2 631 aa3.52□□□□□ -1.85
SCFD1-204ENST00000463622 LDB2O43679 373 aa3.52□□□□□ -1.85
SCFD1-204ENST00000463622 PGLSO95336 258 aa3.52□□□□□ -1.85
SCFD1-204ENST00000463622 IL1BP01584 269 aa3.52□□□□□ -1.85
SCFD1-204ENST00000463622 SHBGP04278 402 aa3.52□□□□□ -1.85
SCFD1-204ENST00000463622 KITP10721 976 aa3.52□□□□□ -1.85
SCFD1-204ENST00000463622 H2AFXP16104 143 aaPredicted RBP3.52□□□□□ -1.85
SCFD1-204ENST00000463622 ELAVL4P26378 380 aaKnown RBP3.52□□□□□ -1.85
SCFD1-204ENST00000463622 TNFRSF8P28908 595 aa3.52□□□□□ -1.85
SCFD1-204ENST00000463622 SSTR1P30872 391 aa3.52□□□□□ -1.85
SCFD1-204ENST00000463622 CCKBRP32239 447 aa3.52□□□□□ -1.85
SCFD1-204ENST00000463622 FDFT1P37268 417 aa3.52□□□□□ -1.85
SCFD1-204ENST00000463622 ELK3P41970 407 aa3.52□□□□□ -1.85
SCFD1-204ENST00000463622 CSNK1DP48730 415 aa3.52□□□□□ -1.85
SCFD1-204ENST00000463622 GEMP55040 296 aa3.52□□□□□ -1.85
SCFD1-204ENST00000463622 POLE2P56282 527 aa3.52□□□□□ -1.85
SCFD1-204ENST00000463622 AP1S1P61966 158 aa3.52□□□□□ -1.85
SCFD1-204ENST00000463622 RAB1AP62820 205 aa3.52□□□□□ -1.85
SCFD1-204ENST00000463622 TUBA4AP68366 448 aa3.52□□□□□ -1.85
SCFD1-204ENST00000463622 SULT2A1Q06520 285 aa3.52□□□□□ -1.85
SCFD1-204ENST00000463622 CDK18Q07002 472 aa3.52□□□□□ -1.85
SCFD1-204ENST00000463622 PDIA2Q13087 525 aaKnown RBP3.52□□□□□ -1.85
SCFD1-204ENST00000463622 HLTFQ14527 1009 aaKnown RBP eCLIP3.52□□□□□ -1.851e-7■□□□□ 9.6
SCFD1-204ENST00000463622 SEMA3AQ14563 771 aa3.52□□□□□ -1.85
SCFD1-204ENST00000463622 POU6F1Q14863 301 aa3.52□□□□□ -1.85
SCFD1-204ENST00000463622 SLC1A5Q15758 541 aa3.52□□□□□ -1.85
SCFD1-204ENST00000463622 ZNF542PQ5EBM4 170 aa3.52□□□□□ -1.85
SCFD1-204ENST00000463622 MANEAQ5SRI9 462 aa3.52□□□□□ -1.85
SCFD1-204ENST00000463622 PIP5KL1Q5T9C9 394 aa3.52□□□□□ -1.85
SCFD1-204ENST00000463622 FAM46CQ5VWP2 391 aa3.52□□□□□ -1.85
SCFD1-204ENST00000463622 WDR93Q6P2C0 686 aa3.52□□□□□ -1.85
SCFD1-204ENST00000463622 GDPD4Q6W3E5 623 aa3.52□□□□□ -1.85
SCFD1-204ENST00000463622 GCNT7Q6ZNI0 430 aa3.52□□□□□ -1.85
SCFD1-204ENST00000463622 BZW1Q7L1Q6 419 aaKnown RBP3.52□□□□□ -1.85
SCFD1-204ENST00000463622 MAATS1Q7Z4T9 603 aa3.52□□□□□ -1.85
SCFD1-204ENST00000463622 DSG4Q86SJ6 1040 aa3.52□□□□□ -1.85
SCFD1-204ENST00000463622 LDB1Q86U70 411 aaPredicted RBP3.52□□□□□ -1.85
SCFD1-204ENST00000463622 CCDC25Q86WR0 208 aa3.52□□□□□ -1.85
SCFD1-204ENST00000463622 HORMAD1Q86X24 394 aa3.52□□□□□ -1.85
SCFD1-204ENST00000463622 LRRC49Q8IUZ0 686 aa3.52□□□□□ -1.85
SCFD1-204ENST00000463622 SLC35F3Q8IY50 421 aa3.52□□□□□ -1.85
SCFD1-204ENST00000463622 MCUQ8NE86 351 aa3.52□□□□□ -1.85
SCFD1-204ENST00000463622 ZNF548Q8NEK5 533 aaPredicted RBP3.52□□□□□ -1.85
SCFD1-204ENST00000463622 ACVR1CQ8NER5 493 aa3.52□□□□□ -1.85
SCFD1-204ENST00000463622 NAT6Q93015 286 aa3.52□□□□□ -1.85
SCFD1-204ENST00000463622 ISG20Q96AZ6 181 aaKnown RBP3.52□□□□□ -1.85
SCFD1-204ENST00000463622 TMEM159Q96B96 161 aa3.52□□□□□ -1.85
SCFD1-204ENST00000463622 FEM1CQ96JP0 617 aa3.52□□□□□ -1.85
SCFD1-204ENST00000463622 DNAJC1Q96KC8 554 aaKnown RBP3.52□□□□□ -1.85
SCFD1-204ENST00000463622 TBATAQ96M53 351 aa3.52□□□□□ -1.85
SCFD1-204ENST00000463622 VAT1Q99536 393 aa3.52□□□□□ -1.85
SCFD1-204ENST00000463622 CDC42EP4Q9H3Q1 356 aaKnown RBP3.52□□□□□ -1.85
SCFD1-204ENST00000463622 SUDS3Q9H7L9 328 aaPredicted RBP3.52□□□□□ -1.85
SCFD1-204ENST00000463622 BPIFA1Q9NP55 256 aa3.52□□□□□ -1.85
SCFD1-204ENST00000463622 SAYSD1Q9NPB0 183 aa3.52□□□□□ -1.85
SCFD1-204ENST00000463622 EIF2B3Q9NR50 452 aaKnown RBP3.52□□□□□ -1.85
SCFD1-204ENST00000463622 CHRAC1Q9NRG0 131 aa3.52□□□□□ -1.85
SCFD1-204ENST00000463622 IL36AQ9UHA7 158 aa3.52□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms