RNA–Protein interactions for RNA: ENST00000448183.6

NEDD9-204, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best)

Gene NEDD9, Length 4,934 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-204ENST00000448183 RIOK2Q9BVS4 552 aaKnown RBP7.54□□□□□ -1.2
NEDD9-204ENST00000448183 ZNF700Q9H0M5 742 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 XKR8Q9H6D3 395 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 ZNF696Q9H7X3 374 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 POPDC3Q9HBV1 291 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 HS3ST4Q9Y661 456 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 BTBD19C9JJ37 291 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 LRRN3E7EW58 273 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 M0R036 132 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 PROM1O43490 865 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 RASAL1O95294 804 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 CHRNA1P02708 482 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 MT-ND5P03915 603 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 TFPTP0C1Z6 253 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 ATP1B2P14415 290 aaPredicted RBP7.54□□□□□ -1.2
NEDD9-204ENST00000448183 CXCR1P25024 350 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 MAPK3P27361 379 aaPredicted RBP7.54□□□□□ -1.2
NEDD9-204ENST00000448183 ACVRL1P37023 503 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 HLCSP50747 726 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 ZNF181Q2M3W8 571 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 EMC10Q5UCC4 262 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 TMEM236Q5W0B7 351 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 REEP3Q6NUK4 255 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 PRSS55Q6UWB4 352 aaPredicted RBP7.54□□□□□ -1.2
NEDD9-204ENST00000448183 GET4Q7L5D6 327 aaPredicted RBP7.54□□□□□ -1.2
NEDD9-204ENST00000448183 ZNF227Q86WZ6 799 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 CEP97Q8IW35 865 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 PIAS4Q8N2W9 510 aaPredicted RBP7.54□□□□□ -1.2
NEDD9-204ENST00000448183 CLDN19Q8N6F1 224 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 OR2AP1Q8NGE2 309 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 OR5J2Q8NH18 312 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 TRUB1Q8WWH5 349 aaKnown RBP7.54□□□□□ -1.2
NEDD9-204ENST00000448183 THRSPQ92748 146 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 KCNJ9Q92806 393 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 SLC25A36Q96CQ1 311 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 NUS1Q96E22 293 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 BIRC8Q96P09 236 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 CCM2Q9BSQ5 444 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 SMOC2Q9H3U7 446 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 LRRN3Q9H3W5 708 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 PAK1IP1Q9NWT1 392 aaPredicted RBP7.54□□□□□ -1.2
NEDD9-204ENST00000448183 ADAMTS6Q9UKP5 1117 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 UTS2RQ9UKP6 389 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 FMN2Q9NZ56 1722 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 ZNF878C9JN71 531 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 FLRT2O43155 660 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 MTX2O75431 263 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 FOSL2P15408 326 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 PVALBP20472 110 aaPredicted RBP7.54□□□□□ -1.2
NEDD9-204ENST00000448183 PROZP22891 400 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 NDUFS1P28331 727 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 HTR1EP28566 365 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 TAS2R50P59544 299 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 RPA4Q13156 261 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 LSAMPQ13449 338 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 SERINC3Q13530 473 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 ENPP2Q13822 863 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 ZNF267Q14586 743 aaPredicted RBP7.54□□□□□ -1.2
NEDD9-204ENST00000448183 MAPK14Q16539 360 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 UGT8Q16880 541 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 ATG9BQ674R7 924 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 BRAT1Q6PJG6 821 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 HSDL2Q6YN16 418 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 TICAM1Q8IUC6 712 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 SCML4Q8N228 414 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 OR56A1Q8NGH5 318 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 STOML3Q8TAV4 291 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 AKAP1Q92667 903 aaKnown RBP eCLIP7.54□□□□□ -1.2
NEDD9-204ENST00000448183 SLC7A6OSQ96CW6 309 aaPredicted RBP7.54□□□□□ -1.2
NEDD9-204ENST00000448183 TBL1XR1Q9BZK7 514 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 SCP2D1Q9UJQ7 156 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 RNF11Q9Y3C5 154 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 KCTD3Q9Y597 815 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 PDE4DIPQ5VU43 2346 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 EPOP01588 193 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 AGTRAPQ6RW13 159 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 TMIGD1Q6UXZ0 262 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 LRRC69Q6ZNQ3 347 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 PRSS58Q8IYP2 241 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 ZNF527Q8NB42 609 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 OSTF1Q92882 214 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 ZNF382Q96SR6 550 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 EPYCQ99645 322 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 HERC2P3Q9BVR0 1158 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 MS4A12Q9NXJ0 267 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 KAT6AQ92794 2004 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 SMIM30A4D0T7 59 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 A8MV72 311 aaPredicted RBP7.53□□□□□ -1.2
NEDD9-204ENST00000448183 E7ESA3 106 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 FBP2O00757 339 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 SLC19A2O60779 497 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 OAS1P00973 400 aaKnown RBP7.53□□□□□ -1.2
NEDD9-204ENST00000448183 C8AP07357 584 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 ACP5P13686 325 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 ARF3P61204 181 aaPredicted RBP7.53□□□□□ -1.2
NEDD9-204ENST00000448183 ARF1P84077 181 aaKnown RBP7.53□□□□□ -1.2
NEDD9-204ENST00000448183 E2F1Q01094 437 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 SLC39A4Q6P5W5 647 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 RASGEF1AQ8N9B8 481 aa7.53□□□□□ -1.2
NEDD9-204ENST00000448183 GOLM1Q8NBJ4 401 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms