RNA–Protein interactions for RNA: ENST00000438395.5

VPS50-204, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 3

Gene VPS50, Length 538 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-204ENST00000438395 KRT14P02533 472 aa7.34□□□□□ -1.23
VPS50-204ENST00000438395 STATHP02808 62 aa7.34□□□□□ -1.23
VPS50-204ENST00000438395 HIST1H2AGP0C0S8 130 aaPredicted RBP7.34□□□□□ -1.23
VPS50-204ENST00000438395 ITGAMP11215 1152 aa7.34□□□□□ -1.23
VPS50-204ENST00000438395 ESRRAP11474 423 aaPredicted RBP7.34□□□□□ -1.23
VPS50-204ENST00000438395 MLNP12872 115 aa7.34□□□□□ -1.23
VPS50-204ENST00000438395 IL1RNP18510 177 aa7.34□□□□□ -1.23
VPS50-204ENST00000438395 HIST1H2ADP20671 130 aa7.34□□□□□ -1.23
VPS50-204ENST00000438395 CCND1P24385 295 aa7.34□□□□□ -1.23
VPS50-204ENST00000438395 CXCR5P32302 372 aa7.34□□□□□ -1.23
VPS50-204ENST00000438395 SLC1A2P43004 574 aa7.34□□□□□ -1.23
VPS50-204ENST00000438395 XCR1P46094 333 aa7.34□□□□□ -1.23
VPS50-204ENST00000438395 CLCN7P51798 805 aa7.34□□□□□ -1.23
VPS50-204ENST00000438395 TBPL1P62380 186 aa7.34□□□□□ -1.23
VPS50-204ENST00000438395 YBX1P67809 324 aaKnown RBP7.34□□□□□ -1.23
VPS50-204ENST00000438395 OC90Q02509 493 aaPredicted RBP7.34□□□□□ -1.23
VPS50-204ENST00000438395 TAP2Q03519 686 aa7.34□□□□□ -1.23
VPS50-204ENST00000438395 ACTN3Q08043 901 aaPredicted RBP7.34□□□□□ -1.23
VPS50-204ENST00000438395 CTBP1Q13363 440 aa7.34□□□□□ -1.23
VPS50-204ENST00000438395 KCNJ11Q14654 390 aa7.34□□□□□ -1.23
VPS50-204ENST00000438395 SIX1Q15475 284 aaPredicted RBP7.34□□□□□ -1.23
VPS50-204ENST00000438395 EXT1Q16394 746 aa7.34□□□□□ -1.23
VPS50-204ENST00000438395 SYT16Q17RD7 645 aa7.34□□□□□ -1.23
VPS50-204ENST00000438395 ZNF425Q6IV72 752 aa7.34□□□□□ -1.23
VPS50-204ENST00000438395 CENPUQ71F23 418 aa7.34□□□□□ -1.23
VPS50-204ENST00000438395 PIWIL4Q7Z3Z4 852 aaKnown RBP7.34□□□□□ -1.23
VPS50-204ENST00000438395 CPEB2Q7Z5Q1 589 aaKnown RBP7.34□□□□□ -1.23
VPS50-204ENST00000438395 TICAM1Q8IUC6 712 aa7.34□□□□□ -1.23
VPS50-204ENST00000438395 DENND6AQ8IWF6 608 aa7.34□□□□□ -1.23
VPS50-204ENST00000438395 CPNE9Q8IYJ1 553 aa7.34□□□□□ -1.23
VPS50-204ENST00000438395 MYO1HQ8N1T3 1032 aa7.34□□□□□ -1.23
VPS50-204ENST00000438395 SLC5A8Q8N695 610 aa7.34□□□□□ -1.23
VPS50-204ENST00000438395 FAM98AQ8NCA5 519 aaKnown RBP7.34□□□□□ -1.23
VPS50-204ENST00000438395 DNAJB8Q8NHS0 232 aa7.34□□□□□ -1.23
VPS50-204ENST00000438395 ASB11Q8WXH4 323 aa7.34□□□□□ -1.23
VPS50-204ENST00000438395 MAGOHBQ96A72 148 aaKnown RBP7.34□□□□□ -1.23
VPS50-204ENST00000438395 HIST1H2AHQ96KK5 128 aa7.34□□□□□ -1.23
VPS50-204ENST00000438395 ZNF354BQ96LW1 612 aa7.34□□□□□ -1.23
VPS50-204ENST00000438395 PRAP1Q96NZ9 151 aa7.34□□□□□ -1.23
VPS50-204ENST00000438395 GPR21Q99679 349 aa7.34□□□□□ -1.23
VPS50-204ENST00000438395 HIST1H2AJQ99878 128 aa7.34□□□□□ -1.23
VPS50-204ENST00000438395 UTP23Q9BRU9 249 aaKnown RBP7.34□□□□□ -1.23
VPS50-204ENST00000438395 H2AFJQ9BTM1 129 aa7.34□□□□□ -1.23
VPS50-204ENST00000438395 TRIM54Q9BYV2 358 aa7.34□□□□□ -1.23
VPS50-204ENST00000438395 VN1R1Q9GZP7 353 aa7.34□□□□□ -1.23
VPS50-204ENST00000438395 KCNK13Q9HB14 408 aa7.34□□□□□ -1.23
VPS50-204ENST00000438395 CHST11Q9NPF2 352 aa7.34□□□□□ -1.23
VPS50-204ENST00000438395 STMN3Q9NZ72 180 aa7.34□□□□□ -1.23
VPS50-204ENST00000438395 FBXO5Q9UKT4 447 aa7.34□□□□□ -1.23
VPS50-204ENST00000438395 PCM1Q15154 2024 aa7.34□□□□□ -1.24
VPS50-204ENST00000438395 CACNA1DQ01668 2161 aa7.33□□□□□ -1.24
VPS50-204ENST00000438395 SNRNP200O75643 2136 aaKnown RBP7.33□□□□□ -1.24
VPS50-204ENST00000438395 TCRBV7S3A2A0A539 114 aa7.33□□□□□ -1.24
VPS50-204ENST00000438395 TGFBR3LH3BV60 316 aa7.33□□□□□ -1.24
VPS50-204ENST00000438395 FOXS1O43638 330 aa7.33□□□□□ -1.24
VPS50-204ENST00000438395 SLC19A2O60779 497 aa7.33□□□□□ -1.24
VPS50-204ENST00000438395 SERPIND1P05546 499 aa7.33□□□□□ -1.24
VPS50-204ENST00000438395 C8GP07360 202 aa7.33□□□□□ -1.24
VPS50-204ENST00000438395 CELA2AP08217 269 aa7.33□□□□□ -1.24
VPS50-204ENST00000438395 COX6B1P14854 86 aa7.33□□□□□ -1.24
VPS50-204ENST00000438395 JAK1P23458 1154 aa7.33□□□□□ -1.24
VPS50-204ENST00000438395 ELAVL4P26378 380 aaKnown RBP7.33□□□□□ -1.24
VPS50-204ENST00000438395 IMPA1P29218 277 aa7.33□□□□□ -1.24
VPS50-204ENST00000438395 EEF1DP29692 281 aaKnown RBP7.33□□□□□ -1.24
VPS50-204ENST00000438395 SKIV2L2P42285 1042 aaKnown RBP7.33□□□□□ -1.24
VPS50-204ENST00000438395 MAGEA6P43360 314 aa7.33□□□□□ -1.24
VPS50-204ENST00000438395 SMSP52788 366 aa7.33□□□□□ -1.24
VPS50-204ENST00000438395 SP140Q13342 867 aa7.33□□□□□ -1.24
VPS50-204ENST00000438395 ART3Q13508 389 aa7.33□□□□□ -1.24
VPS50-204ENST00000438395 ABRAXAS2Q15018 415 aa7.33□□□□□ -1.24
VPS50-204ENST00000438395 HERC3Q15034 1050 aa7.33□□□□□ -1.24
VPS50-204ENST00000438395 PCOLCEQ15113 449 aa7.33□□□□□ -1.24
VPS50-204ENST00000438395 NSDHLQ15738 373 aa7.33□□□□□ -1.24
VPS50-204ENST00000438395 ZNF766Q5HY98 468 aa7.33□□□□□ -1.24
VPS50-204ENST00000438395 ACER2Q5QJU3 275 aa7.33□□□□□ -1.24
VPS50-204ENST00000438395 PLAG1Q6DJT9 500 aa7.33□□□□□ -1.24
VPS50-204ENST00000438395 NIPAL1Q6NVV3 410 aa7.33□□□□□ -1.24
VPS50-204ENST00000438395 TMEM205Q6UW68 189 aa7.33□□□□□ -1.24
VPS50-204ENST00000438395 C20orf204Q6ZNR8 217 aa7.33□□□□□ -1.24
VPS50-204ENST00000438395 LANCL3Q6ZV70 420 aa7.33□□□□□ -1.24
VPS50-204ENST00000438395 GDF7Q7Z4P5 450 aa7.33□□□□□ -1.24
VPS50-204ENST00000438395 ASPGQ86U10 573 aa7.33□□□□□ -1.24
VPS50-204ENST00000438395 MCEMP1Q8IX19 187 aa7.33□□□□□ -1.24
VPS50-204ENST00000438395 ZNF808Q8N4W9 903 aaPredicted RBP7.33□□□□□ -1.24
VPS50-204ENST00000438395 TMEM178AQ8NBL3 297 aa7.33□□□□□ -1.24
VPS50-204ENST00000438395 OR51Q1Q8NH59 317 aa7.33□□□□□ -1.24
VPS50-204ENST00000438395 GIMAP7Q8NHV1 300 aa7.33□□□□□ -1.24
VPS50-204ENST00000438395 CD200R1Q8TD46 325 aa7.33□□□□□ -1.24
VPS50-204ENST00000438395 GRK7Q8WTQ7 553 aa7.33□□□□□ -1.24
VPS50-204ENST00000438395 NUDT8Q8WV74 236 aa7.33□□□□□ -1.24
VPS50-204ENST00000438395 SLC13A3Q8WWT9 602 aa7.33□□□□□ -1.24
VPS50-204ENST00000438395 PSMF1Q92530 271 aa7.33□□□□□ -1.24
VPS50-204ENST00000438395 RELTQ969Z4 430 aa7.33□□□□□ -1.24
VPS50-204ENST00000438395 CCDC138Q96M89 665 aa7.33□□□□□ -1.24
VPS50-204ENST00000438395 TAAR6Q96RI8 345 aa7.33□□□□□ -1.24
VPS50-204ENST00000438395 LPAR4Q99677 370 aa7.33□□□□□ -1.24
VPS50-204ENST00000438395 HAUS8Q9BT25 410 aa7.33□□□□□ -1.24
VPS50-204ENST00000438395 GSX2Q9BZM3 304 aa7.33□□□□□ -1.24
VPS50-204ENST00000438395 KLHL1Q9NR64 748 aa7.33□□□□□ -1.24
VPS50-204ENST00000438395 TMEM184CQ9NVA4 438 aa7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms