RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 RHOXF2BP0C7M4 288 aa14.39□□□□□ -0.11
LIMS3-201ENST00000437679 VARSP26640 1264 aaKnown RBP14.39□□□□□ -0.11
LIMS3-201ENST00000437679 TYK2P29597 1187 aa14.39□□□□□ -0.11
LIMS3-201ENST00000437679 SERPINB8P50452 374 aa14.39□□□□□ -0.11
LIMS3-201ENST00000437679 SERPINB9P50453 376 aa14.39□□□□□ -0.11
LIMS3-201ENST00000437679 SOX8P57073 446 aa14.39□□□□□ -0.11
LIMS3-201ENST00000437679 SNRPNP63162 240 aaKnown RBP14.39□□□□□ -0.11
LIMS3-201ENST00000437679 TLE1Q04724 770 aa14.39□□□□□ -0.11
LIMS3-201ENST00000437679 DLG1Q12959 904 aa14.39□□□□□ -0.11
LIMS3-201ENST00000437679 FAM83EQ2M2I3 478 aa14.39□□□□□ -0.11
LIMS3-201ENST00000437679 UBAP2Q5T6F2 1119 aaKnown RBP14.39□□□□□ -0.11
LIMS3-201ENST00000437679 ATG9BQ674R7 924 aa14.39□□□□□ -0.11
LIMS3-201ENST00000437679 NIPAL1Q6NVV3 410 aa14.39□□□□□ -0.11
LIMS3-201ENST00000437679 SLCO4C1Q6ZQN7 724 aa14.39□□□□□ -0.11
LIMS3-201ENST00000437679 ABHD13Q7L211 337 aa14.39□□□□□ -0.11
LIMS3-201ENST00000437679 KRT78Q8N1N4 520 aa14.39□□□□□ -0.11
LIMS3-201ENST00000437679 SNX31Q8N9S9 440 aa14.39□□□□□ -0.11
LIMS3-201ENST00000437679 NT5CQ8TCD5 201 aa14.39□□□□□ -0.11
LIMS3-201ENST00000437679 KCTD4Q8WVF5 259 aa14.39□□□□□ -0.11
LIMS3-201ENST00000437679 SLC44A1Q8WWI5 657 aa14.39□□□□□ -0.11
LIMS3-201ENST00000437679 NXNL1Q96CM4 212 aa14.39□□□□□ -0.11
LIMS3-201ENST00000437679 MOCOSQ96EN8 888 aa14.39□□□□□ -0.11
LIMS3-201ENST00000437679 RHOXF2Q9BQY4 288 aa14.39□□□□□ -0.11
LIMS3-201ENST00000437679 TRIM4Q9C037 500 aa14.39□□□□□ -0.11
LIMS3-201ENST00000437679 EPN3Q9H201 632 aa14.39□□□□□ -0.11
LIMS3-201ENST00000437679 HCN3Q9P1Z3 774 aa14.39□□□□□ -0.11
LIMS3-201ENST00000437679 C5AR2Q9P296 337 aa14.39□□□□□ -0.11
LIMS3-201ENST00000437679 PTBP2Q9UKA9 531 aaKnown RBP14.39□□□□□ -0.11
LIMS3-201ENST00000437679 MKL2Q9ULH7 1088 aa14.39□□□□□ -0.11
LIMS3-201ENST00000437679 NAALAD2Q9Y3Q0 740 aa14.39□□□□□ -0.11
LIMS3-201ENST00000437679 NBASA2RRP1 2371 aa14.39□□□□□ -0.11
LIMS3-201ENST00000437679 CNTRLQ7Z7A1 2325 aa14.38□□□□□ -0.11
LIMS3-201ENST00000437679 A0A087WUV0 522 aaPredicted RBP14.38□□□□□ -0.11
LIMS3-201ENST00000437679 A0A096LPK6 155 aa14.38□□□□□ -0.11
LIMS3-201ENST00000437679 CCDC189A1A4V9 331 aa14.38□□□□□ -0.11
LIMS3-201ENST00000437679 HMX2A2RU54 273 aa14.38□□□□□ -0.11
LIMS3-201ENST00000437679 SYCE1LA8MT33 242 aa14.38□□□□□ -0.11
LIMS3-201ENST00000437679 CCNT2O60583 730 aaKnown RBP14.38□□□□□ -0.11
LIMS3-201ENST00000437679 ALOX12BO75342 701 aa14.38□□□□□ -0.11
LIMS3-201ENST00000437679 RDH16O75452 317 aa14.38□□□□□ -0.11
LIMS3-201ENST00000437679 BMP10O95393 424 aa14.38□□□□□ -0.11
LIMS3-201ENST00000437679 HPP00738 406 aa14.38□□□□□ -0.11
LIMS3-201ENST00000437679 ALOX12P18054 663 aa14.38□□□□□ -0.11
LIMS3-201ENST00000437679 MSH2P43246 934 aa14.38□□□□□ -0.11
LIMS3-201ENST00000437679 SLBPQ14493 270 aaKnown RBP eCLIP14.38□□□□□ -0.11
LIMS3-201ENST00000437679 PDK4Q16654 411 aa14.38□□□□□ -0.11
LIMS3-201ENST00000437679 MINDY4Q4G0A6 757 aa14.38□□□□□ -0.11
LIMS3-201ENST00000437679 FBXO48Q5FWF7 155 aa14.38□□□□□ -0.11
LIMS3-201ENST00000437679 COLEC12Q5KU26 742 aa14.38□□□□□ -0.11
LIMS3-201ENST00000437679 MFSD4BQ5TF39 518 aa14.38□□□□□ -0.11
LIMS3-201ENST00000437679 FAAH2Q6GMR7 532 aa14.38□□□□□ -0.11
LIMS3-201ENST00000437679 KLC3Q6P597 504 aa14.38□□□□□ -0.11
LIMS3-201ENST00000437679 NDUFAF7Q7L592 441 aa14.38□□□□□ -0.11
LIMS3-201ENST00000437679 LRRC70Q7Z2Q7 622 aa14.38□□□□□ -0.11
LIMS3-201ENST00000437679 AFAP1L2Q8N4X5 818 aa14.38□□□□□ -0.11
LIMS3-201ENST00000437679 ANKRD53Q8N9V6 530 aa14.38□□□□□ -0.11
LIMS3-201ENST00000437679 TTLQ8NG68 377 aa14.38□□□□□ -0.11
LIMS3-201ENST00000437679 METTL21AQ8WXB1 218 aa14.38□□□□□ -0.11
LIMS3-201ENST00000437679 ESAMQ96AP7 390 aa14.38□□□□□ -0.11
LIMS3-201ENST00000437679 C8orf44Q96CB5 159 aa14.38□□□□□ -0.11
LIMS3-201ENST00000437679 PAFAH2Q99487 392 aa14.38□□□□□ -0.11
LIMS3-201ENST00000437679 PITHD1Q9GZP4 211 aaPredicted RBP14.38□□□□□ -0.11
LIMS3-201ENST00000437679 EHD1Q9H4M9 534 aa14.38□□□□□ -0.11
LIMS3-201ENST00000437679 NSG1A0A0A6YYJ2 146 aa14.37□□□□□ -0.11
LIMS3-201ENST00000437679 POC1B-GALNT4F8VUJ3 575 aa14.37□□□□□ -0.11
LIMS3-201ENST00000437679 PYCARD-AS1I3L0S3 204 aa14.37□□□□□ -0.11
LIMS3-201ENST00000437679 UBXN8O00124 270 aa14.37□□□□□ -0.11
LIMS3-201ENST00000437679 GALR3O60755 368 aaPredicted RBP14.37□□□□□ -0.11
LIMS3-201ENST00000437679 KRT38O76015 456 aa14.37□□□□□ -0.11
LIMS3-201ENST00000437679 SERPINA6P08185 405 aa14.37□□□□□ -0.11
LIMS3-201ENST00000437679 CYC1P08574 325 aa14.37□□□□□ -0.11
LIMS3-201ENST00000437679 ZNF888P0CJ79 500 aaPredicted RBP14.37□□□□□ -0.11
LIMS3-201ENST00000437679 IL10P22301 178 aa14.37□□□□□ -0.11
LIMS3-201ENST00000437679 GSTM2P28161 218 aa14.37□□□□□ -0.11
LIMS3-201ENST00000437679 HNF4AP41235 474 aa14.37□□□□□ -0.11
LIMS3-201ENST00000437679 XCR1P46094 333 aa14.37□□□□□ -0.11
LIMS3-201ENST00000437679 KCNC1P48547 511 aa14.37□□□□□ -0.11
LIMS3-201ENST00000437679 IRF9Q00978 393 aa14.37□□□□□ -0.11
LIMS3-201ENST00000437679 EEF1A2Q05639 463 aaKnown RBP14.37□□□□□ -0.11
LIMS3-201ENST00000437679 ACAP2Q15057 778 aa14.37□□□□□ -0.11
LIMS3-201ENST00000437679 DEFB134Q4QY38 66 aa14.37□□□□□ -0.11
LIMS3-201ENST00000437679 XKR6Q5GH73 641 aa14.37□□□□□ -0.11
LIMS3-201ENST00000437679 TMIGD1Q6UXZ0 262 aa14.37□□□□□ -0.11
LIMS3-201ENST00000437679 PDSS2Q86YH6 399 aa14.37□□□□□ -0.11
LIMS3-201ENST00000437679 PARP9Q8IXQ6 854 aa14.37□□□□□ -0.11
LIMS3-201ENST00000437679 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP14.37□□□□□ -0.11
LIMS3-201ENST00000437679 CENPLQ8N0S6 344 aaPredicted RBP14.37□□□□□ -0.11
LIMS3-201ENST00000437679 RHEBL1Q8TAI7 183 aa14.37□□□□□ -0.11
LIMS3-201ENST00000437679 UHMK1Q8TAS1 419 aaKnown RBP14.37□□□□□ -0.11
LIMS3-201ENST00000437679 TM9SF4Q92544 642 aa14.37□□□□□ -0.11
LIMS3-201ENST00000437679 ATOH8Q96SQ7 321 aa14.37□□□□□ -0.11
LIMS3-201ENST00000437679 CD244Q9BZW8 370 aa14.37□□□□□ -0.11
LIMS3-201ENST00000437679 SLC6A16Q9GZN6 736 aa14.37□□□□□ -0.11
LIMS3-201ENST00000437679 VPS11Q9H270 941 aa14.37□□□□□ -0.11
LIMS3-201ENST00000437679 ZNF552Q9H707 407 aaPredicted RBP14.37□□□□□ -0.11
LIMS3-201ENST00000437679 NT5DC2Q9H857 520 aa14.37□□□□□ -0.11
LIMS3-201ENST00000437679 ZNF160Q9HCG1 818 aa14.37□□□□□ -0.11
LIMS3-201ENST00000437679 ZNF860A6NHJ4 632 aa14.36□□□□□ -0.11
LIMS3-201ENST00000437679 ANKDD1BA6NHY2 528 aa14.36□□□□□ -0.11
LIMS3-201ENST00000437679 JRKO75564 520 aa14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms