RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 SLC16A5O15375 505 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 CAPN5O15484 640 aaPredicted RBP6.98□□□□□ -1.29
VPS53-204ENST00000437048 AOC2O75106 756 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 DLDP09622 509 aaKnown RBP6.98□□□□□ -1.29
VPS53-204ENST00000437048 HDCP19113 662 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 SLC41A1Q8IVJ1 513 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 B3GNT7Q8NFL0 401 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 NEIL3Q8TAT5 605 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 SLC35G5Q96KT7 338 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 DERL2Q9GZP9 239 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 PIGMQ9H3S5 423 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 WDR26Q9H7D7 661 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 GMPR2Q9P2T1 348 aaKnown RBP6.98□□□□□ -1.29
VPS53-204ENST00000437048 PGM5Q15124 567 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 DUOXA1Q1HG43 343 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 TRAPPC5Q8IUR0 188 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 HSD17B14Q9BPX1 270 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 PITHD1Q9GZP4 211 aaPredicted RBP6.98□□□□□ -1.29
VPS53-204ENST00000437048 APMAPQ9HDC9 416 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 MN1Q10571 1320 aaPredicted RBP6.98□□□□□ -1.29
VPS53-204ENST00000437048 H3BRB1 525 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 IMPA2O14732 288 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 SLC34A2O95436 690 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 ADRA1BP35368 520 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 MOGSQ13724 837 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 MELKQ14680 651 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 RNF212Q495C1 297 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 C6orf141Q5SZD1 244 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 PRSS55Q6UWB4 352 aaPredicted RBP6.98□□□□□ -1.29
VPS53-204ENST00000437048 DET1Q7L5Y6 550 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 C11orf96Q7Z7L8 435 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 C14orf80Q86SX3 495 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 C12orf45Q8N5I9 185 aaPredicted RBP6.98□□□□□ -1.29
VPS53-204ENST00000437048 SUSD6Q92537 303 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 CNTNAP3BQ96NU0 1288 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 TUT1Q9H6E5 874 aaKnown RBP6.98□□□□□ -1.29
VPS53-204ENST00000437048 TPT1P8Q9HAU6 139 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 CABIN1Q9Y6J0 2220 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 GLYATL1P3A0A0U1RQE8 302 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 OIP5O43482 229 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 FRKP42685 505 aaPredicted RBP6.98□□□□□ -1.29
VPS53-204ENST00000437048 FAM183BPQ6ZVS7 135 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 SMIM15Q7Z3B0 74 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 SLC43A3Q8NBI5 491 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 TXNDC5Q8NBS9 432 aaKnown RBP6.98□□□□□ -1.29
VPS53-204ENST00000437048 GRIN3AQ8TCU5 1115 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 PIGKQ92643 395 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 ABCG5Q9H222 651 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 RNF150Q9ULK6 438 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 B3GALNT1O75752 331 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 PTPN2P17706 415 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 TAS2R20P59543 309 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 GALEQ14376 348 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 CES3Q6UWW8 571 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 ZNF783Q6ZMS7 281 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 CHST4Q8NCG5 386 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 BBS10Q8TAM1 723 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 MYRFLQ96LU7 910 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 REEP4Q9H6H4 257 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 SERINC1Q9NRX5 453 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 SLC17A7Q9P2U7 560 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 SLC17A6Q9P2U8 582 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 TTC3P53804 2025 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 USP12O75317 370 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 PPP3CBP16298 524 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 CD83Q01151 205 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 SLC14A2Q15849 920 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 C9orf64Q5T6V5 341 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 GSG1LQ6UXU4 331 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 MIB1Q86YT6 1006 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 SIAH1Q8IUQ4 282 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 ZNF563Q8TA94 476 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 SEMA3CQ99985 751 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 ANKRD33BA6NCL7 494 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 D6RAR5 112 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 MEN1O00255 615 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 SLURP2P0DP57 97 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 HOXA9P31269 272 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 RPIAP49247 311 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 CDH12P55289 794 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 CRHR2Q13324 411 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 ZNF460Q14592 562 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 CXorf57Q6NSI4 855 aaKnown RBP6.98□□□□□ -1.29
VPS53-204ENST00000437048 CHDHQ8NE62 594 aaPredicted RBP6.98□□□□□ -1.29
VPS53-204ENST00000437048 OR7G3Q8NG95 312 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 KCNJ16Q9NPI9 418 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 CDKN2AIPQ9NXV6 580 aaPredicted RBP6.98□□□□□ -1.29
VPS53-204ENST00000437048 ZNF536O15090 1300 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 CLDN24A6NM45 220 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 EBLN1P0CF75 366 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 THBS3P49746 956 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 CLCN7P51798 805 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 BNIP3Q12983 259 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 CDCA2Q69YH5 1023 aaPredicted RBP6.98□□□□□ -1.29
VPS53-204ENST00000437048 NLRP8Q86W28 1048 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 ADAMTS14Q8WXS8 1223 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 OR51B5Q9H339 312 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 FAM105AQ9NUU6 356 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 KLHL13Q9P2N7 655 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 CDC14AQ9UNH5 594 aa6.98□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms