RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 MLLT3P42568 568 aaPredicted RBP16.37■□□□□ 0.21
CCDC28B-202ENST00000421922 KCNK10P57789 538 aa16.37■□□□□ 0.21
CCDC28B-202ENST00000421922 BNIP1Q12981 228 aa16.37■□□□□ 0.21
CCDC28B-202ENST00000421922 CYLC2Q14093 348 aaPredicted RBP16.37■□□□□ 0.21
CCDC28B-202ENST00000421922 HERC3Q15034 1050 aa16.37■□□□□ 0.21
CCDC28B-202ENST00000421922 TMEM35AQ53FP2 167 aa16.37■□□□□ 0.21
CCDC28B-202ENST00000421922 ZC3H12BQ5HYM0 836 aaKnown RBP16.37■□□□□ 0.21
CCDC28B-202ENST00000421922 NOXRED1Q6NXP6 359 aa16.37■□□□□ 0.21
CCDC28B-202ENST00000421922 GUSBP11Q6P575 273 aa16.37■□□□□ 0.21
CCDC28B-202ENST00000421922 PAOXQ6QHF9 649 aa16.37■□□□□ 0.21
CCDC28B-202ENST00000421922 VN1R5Q7Z5H4 357 aa16.37■□□□□ 0.21
CCDC28B-202ENST00000421922 SPRED1Q7Z699 444 aa16.37■□□□□ 0.21
CCDC28B-202ENST00000421922 SNX32Q86XE0 403 aa16.37■□□□□ 0.21
CCDC28B-202ENST00000421922 POU5F2Q8N7G0 328 aa16.37■□□□□ 0.21
CCDC28B-202ENST00000421922 SRFBP1Q8NEF9 429 aaKnown RBP16.37■□□□□ 0.21
CCDC28B-202ENST00000421922 SLC13A3Q8WWT9 602 aa16.37■□□□□ 0.21
CCDC28B-202ENST00000421922 N4BP2L2Q92802 583 aaPredicted RBP16.37■□□□□ 0.21
CCDC28B-202ENST00000421922 RGMAQ96B86 450 aa16.37■□□□□ 0.21
CCDC28B-202ENST00000421922 PPM1MQ96MI6 270 aa16.37■□□□□ 0.21
CCDC28B-202ENST00000421922 MAP3K3Q99759 626 aa16.37■□□□□ 0.21
CCDC28B-202ENST00000421922 SDR39U1Q9NRG7 319 aaPredicted RBP16.37■□□□□ 0.21
CCDC28B-202ENST00000421922 SDAD1Q9NVU7 687 aaKnown RBP eCLIP16.37■□□□□ 0.21
CCDC28B-202ENST00000421922 CCDC167Q9P0B6 97 aa16.37■□□□□ 0.21
CCDC28B-202ENST00000421922 NCDNQ9UBB6 729 aa16.37■□□□□ 0.21
CCDC28B-202ENST00000421922 GPR45Q9Y5Y3 372 aa16.37■□□□□ 0.21
CCDC28B-202ENST00000421922 MYO15AQ9UKN7 3530 aa16.37■□□□□ 0.21
CCDC28B-202ENST00000421922 LNP1A1A4G5 178 aa16.36■□□□□ 0.21
CCDC28B-202ENST00000421922 SLC9B1P1A6NJY1 282 aa16.36■□□□□ 0.21
CCDC28B-202ENST00000421922 NR5A2O00482 541 aa16.36■□□□□ 0.21
CCDC28B-202ENST00000421922 FLRT2O43155 660 aa16.36■□□□□ 0.21
CCDC28B-202ENST00000421922 NRP2O60462 931 aa16.36■□□□□ 0.21
CCDC28B-202ENST00000421922 BCKDHAP12694 445 aa16.36■□□□□ 0.21
CCDC28B-202ENST00000421922 TIA1P31483 386 aaKnown RBP eCLIP16.36■□□□□ 0.214e-12■■□□□ 12.6
CCDC28B-202ENST00000421922 ASMTP46597 345 aa16.36■□□□□ 0.21
CCDC28B-202ENST00000421922 LSSP48449 732 aa16.36■□□□□ 0.21
CCDC28B-202ENST00000421922 ACADVLP49748 655 aa16.36■□□□□ 0.21
CCDC28B-202ENST00000421922 CLNS1AP54105 237 aaKnown RBP16.36■□□□□ 0.21
CCDC28B-202ENST00000421922 GFERP55789 205 aa16.36■□□□□ 0.21
CCDC28B-202ENST00000421922 FOXK2Q01167 660 aa16.36■□□□□ 0.21
CCDC28B-202ENST00000421922 RELAQ04206 551 aa16.36■□□□□ 0.21
CCDC28B-202ENST00000421922 MMEL1Q495T6 779 aa16.36■□□□□ 0.21
CCDC28B-202ENST00000421922 LACTB2Q53H82 288 aaPredicted RBP16.36■□□□□ 0.21
CCDC28B-202ENST00000421922 TOR1AIP1Q5JTV8 583 aa16.36■□□□□ 0.21
CCDC28B-202ENST00000421922 DEPDC1Q5TB30 811 aa16.36■□□□□ 0.21
CCDC28B-202ENST00000421922 TRIM40Q6P9F5 258 aa16.36■□□□□ 0.21
CCDC28B-202ENST00000421922 GK5Q6ZS86 529 aa16.36■□□□□ 0.21
CCDC28B-202ENST00000421922 RNF44Q7L0R7 432 aa16.36■□□□□ 0.21
CCDC28B-202ENST00000421922 COMMD6Q7Z4G1 85 aa16.36■□□□□ 0.21
CCDC28B-202ENST00000421922 CARFQ8N187 725 aa16.36■□□□□ 0.21
CCDC28B-202ENST00000421922 METTL4Q8N3J2 472 aa16.36■□□□□ 0.21
CCDC28B-202ENST00000421922 CAMKVQ8NCB2 501 aa16.36■□□□□ 0.21
CCDC28B-202ENST00000421922 RP9Q8TA86 221 aaKnown RBP16.36■□□□□ 0.21
CCDC28B-202ENST00000421922 CHTF18Q8WVB6 975 aa16.36■□□□□ 0.21
CCDC28B-202ENST00000421922 STARD8Q92502 1023 aa16.36■□□□□ 0.21
CCDC28B-202ENST00000421922 TCTN2Q96GX1 697 aa16.36■□□□□ 0.21
CCDC28B-202ENST00000421922 TRAPPC9Q96Q05 1148 aa16.36■□□□□ 0.21
CCDC28B-202ENST00000421922 F2RL3Q96RI0 385 aa16.36■□□□□ 0.21
CCDC28B-202ENST00000421922 SLC25A23Q9BV35 468 aa16.36■□□□□ 0.21
CCDC28B-202ENST00000421922 REXO4Q9GZR2 422 aaKnown RBP16.36■□□□□ 0.21
CCDC28B-202ENST00000421922 IRAK4Q9NWZ3 460 aa16.36■□□□□ 0.21
CCDC28B-202ENST00000421922 MAPRE3Q9UPY8 281 aa16.36■□□□□ 0.21
CCDC28B-202ENST00000421922 LOC100653049A0A140TA62 436 aa16.36■□□□□ 0.21
CCDC28B-202ENST00000421922 KRT34O76011 436 aa16.36■□□□□ 0.21
CCDC28B-202ENST00000421922 UNC5CO95185 931 aa16.36■□□□□ 0.21
CCDC28B-202ENST00000421922 STATHP02808 62 aa16.36■□□□□ 0.21
CCDC28B-202ENST00000421922 ANXA4P09525 319 aaPredicted RBP16.36■□□□□ 0.21
CCDC28B-202ENST00000421922 ZNF806P0C7X5 589 aa16.36■□□□□ 0.21
CCDC28B-202ENST00000421922 HOXB3P14651 431 aaPredicted RBP16.36■□□□□ 0.21
CCDC28B-202ENST00000421922 GPX3P22352 226 aa16.36■□□□□ 0.21
CCDC28B-202ENST00000421922 SSR2P43308 183 aa16.36■□□□□ 0.21
CCDC28B-202ENST00000421922 MRPL19P49406 292 aaKnown RBP16.36■□□□□ 0.21
CCDC28B-202ENST00000421922 TBL3Q12788 808 aaKnown RBP16.36■□□□□ 0.21
CCDC28B-202ENST00000421922 PWP1Q13610 501 aa16.36■□□□□ 0.21
CCDC28B-202ENST00000421922 KIAA0040Q15053 153 aa16.36■□□□□ 0.21
CCDC28B-202ENST00000421922 NUDT13Q86X67 352 aa16.36■□□□□ 0.21
CCDC28B-202ENST00000421922 IFI44Q8TCB0 444 aa16.36■□□□□ 0.21
CCDC28B-202ENST00000421922 CREB3L4Q8TEY5 395 aa16.36■□□□□ 0.21
CCDC28B-202ENST00000421922 TSSK3Q96PN8 268 aa16.36■□□□□ 0.21
CCDC28B-202ENST00000421922 ACTR5Q9H9F9 607 aaPredicted RBP16.36■□□□□ 0.21
CCDC28B-202ENST00000421922 COPS7BQ9H9Q2 264 aaPredicted RBP16.36■□□□□ 0.21
CCDC28B-202ENST00000421922 DNAAF2Q9NVR5 837 aaKnown RBP16.36■□□□□ 0.21
CCDC28B-202ENST00000421922 TMEM45AQ9NWC5 275 aa16.36■□□□□ 0.21
CCDC28B-202ENST00000421922 EME2A4GXA9 379 aaPredicted RBP16.35■□□□□ 0.21
CCDC28B-202ENST00000421922 PROB1E7EW31 1015 aa16.35■□□□□ 0.21
CCDC28B-202ENST00000421922 ANGPT2O15123 496 aa16.35■□□□□ 0.21
CCDC28B-202ENST00000421922 B4GAT1O43505 415 aa16.35■□□□□ 0.21
CCDC28B-202ENST00000421922 CTSVO60911 334 aa16.35■□□□□ 0.21
CCDC28B-202ENST00000421922 ZBTB11O95625 1053 aaPredicted RBP16.35■□□□□ 0.21
CCDC28B-202ENST00000421922 LDOC1O95751 146 aaPredicted RBP16.35■□□□□ 0.21
CCDC28B-202ENST00000421922 EIF2S1P05198 315 aaKnown RBP16.35■□□□□ 0.21
CCDC28B-202ENST00000421922 SNRPB2P08579 225 aaKnown RBP16.35■□□□□ 0.21
CCDC28B-202ENST00000421922 CKMT1AP12532 417 aa16.35■□□□□ 0.21
CCDC28B-202ENST00000421922 SDC1P18827 310 aa16.35■□□□□ 0.21
CCDC28B-202ENST00000421922 JAK1P23458 1154 aa16.35■□□□□ 0.21
CCDC28B-202ENST00000421922 HPCAL1P37235 193 aa16.35■□□□□ 0.21
CCDC28B-202ENST00000421922 CPA2P48052 419 aa16.35■□□□□ 0.21
CCDC28B-202ENST00000421922 UFM1P61960 85 aa16.35■□□□□ 0.21
CCDC28B-202ENST00000421922 ZNF763Q0D2J5 394 aa16.35■□□□□ 0.21
CCDC28B-202ENST00000421922 STX5Q13190 355 aa16.35■□□□□ 0.21
CCDC28B-202ENST00000421922 PTGR1Q14914 329 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms