RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 GPATCH1Q9BRR8 931 aaKnown RBP8.06□□□□□ -1.12
USP54-203ENST00000418501 OSBPL11Q9BXB4 747 aa8.06□□□□□ -1.12
USP54-203ENST00000418501 EBPLQ9BY08 206 aa8.06□□□□□ -1.12
USP54-203ENST00000418501 REXO4Q9GZR2 422 aaKnown RBP8.06□□□□□ -1.12
USP54-203ENST00000418501 TNFRSF12AQ9NP84 129 aa8.06□□□□□ -1.12
USP54-203ENST00000418501 WSB2Q9NYS7 404 aaPredicted RBP8.06□□□□□ -1.12
USP54-203ENST00000418501 CALML5Q9NZT1 146 aa8.06□□□□□ -1.12
USP54-203ENST00000418501 APOBEC3BQ9UH17 382 aaKnown RBP8.06□□□□□ -1.12
USP54-203ENST00000418501 ZNF225Q9UK10 706 aa8.06□□□□□ -1.12
USP54-203ENST00000418501 PCOLCE2Q9UKZ9 415 aa8.06□□□□□ -1.12
USP54-203ENST00000418501 CLCA2Q9UQC9 943 aa8.06□□□□□ -1.12
USP54-203ENST00000418501 A0A1W2PPC4 97 aa8.06□□□□□ -1.12
USP54-203ENST00000418501 BLACEA4D250 179 aa8.06□□□□□ -1.12
USP54-203ENST00000418501 CXCR6O00574 342 aa8.06□□□□□ -1.12
USP54-203ENST00000418501 B3GALT2O43825 422 aa8.06□□□□□ -1.12
USP54-203ENST00000418501 COL9A1P20849 921 aa8.06□□□□□ -1.12
USP54-203ENST00000418501 CD38P28907 300 aa8.06□□□□□ -1.12
USP54-203ENST00000418501 CA5AP35218 305 aa8.06□□□□□ -1.12
USP54-203ENST00000418501 RAD23AP54725 363 aa8.06□□□□□ -1.12
USP54-203ENST00000418501 MANFP55145 182 aaKnown RBP8.06□□□□□ -1.12
USP54-203ENST00000418501 HPCAP84074 193 aa8.06□□□□□ -1.12
USP54-203ENST00000418501 CCNIQ14094 377 aa8.06□□□□□ -1.12
USP54-203ENST00000418501 ELOAQ14241 798 aaKnown RBP8.06□□□□□ -1.12
USP54-203ENST00000418501 GK3PQ14409 553 aa8.06□□□□□ -1.12
USP54-203ENST00000418501 PTGR1Q14914 329 aa8.06□□□□□ -1.12
USP54-203ENST00000418501 COMMD6Q7Z4G1 85 aa8.06□□□□□ -1.12
USP54-203ENST00000418501 PATL1Q86TB9 770 aaKnown RBP8.06□□□□□ -1.12
USP54-203ENST00000418501 PTRH1Q86Y79 214 aaKnown RBP8.06□□□□□ -1.12
USP54-203ENST00000418501 MFSD9Q8NBP5 474 aa8.06□□□□□ -1.12
USP54-203ENST00000418501 CCDC115Q96NT0 180 aa8.06□□□□□ -1.12
USP54-203ENST00000418501 RUBCNLQ9H714 662 aa8.06□□□□□ -1.12
USP54-203ENST00000418501 CCM2LQ9NUG4 571 aaPredicted RBP8.06□□□□□ -1.12
USP54-203ENST00000418501 PDP2Q9P2J9 529 aa8.06□□□□□ -1.12
USP54-203ENST00000418501 EPHA6Q9UF33 1036 aa8.06□□□□□ -1.12
USP54-203ENST00000418501 LRRC42Q9Y546 428 aa8.06□□□□□ -1.12
USP54-203ENST00000418501 SYNDIG1LA6NDD5 238 aa8.06□□□□□ -1.12
USP54-203ENST00000418501 CLIC1O00299 241 aa8.06□□□□□ -1.12
USP54-203ENST00000418501 ZSCAN9O15535 394 aaPredicted RBP8.06□□□□□ -1.12
USP54-203ENST00000418501 DYRK3O43781 588 aa8.06□□□□□ -1.12
USP54-203ENST00000418501 PAX7P23759 505 aa8.06□□□□□ -1.12
USP54-203ENST00000418501 ARRB1P49407 418 aaPredicted RBP8.06□□□□□ -1.12
USP54-203ENST00000418501 ZNF630Q2M218 657 aaPredicted RBP8.06□□□□□ -1.12
USP54-203ENST00000418501 C11orf96Q7Z7L8 435 aa8.06□□□□□ -1.12
USP54-203ENST00000418501 ASPGQ86U10 573 aa8.06□□□□□ -1.12
USP54-203ENST00000418501 TMEM145Q8NBT3 493 aa8.06□□□□□ -1.12
USP54-203ENST00000418501 MIR1-1HGQ9H1L0 117 aa8.06□□□□□ -1.12
USP54-203ENST00000418501 FZD3Q9NPG1 666 aa8.06□□□□□ -1.12
USP54-203ENST00000418501 EHD3Q9NZN3 535 aa8.06□□□□□ -1.12
USP54-203ENST00000418501 ASB1Q9Y576 335 aa8.06□□□□□ -1.12
USP54-203ENST00000418501 PCDHGB3Q9Y5G1 929 aa8.06□□□□□ -1.12
USP54-203ENST00000418501 H7BY64 318 aa8.05□□□□□ -1.12
USP54-203ENST00000418501 YKT6O15498 198 aa8.05□□□□□ -1.12
USP54-203ENST00000418501 LATO43561 262 aa8.05□□□□□ -1.12
USP54-203ENST00000418501 KLK1P06870 262 aa8.05□□□□□ -1.12
USP54-203ENST00000418501 ERGP11308 486 aa8.05□□□□□ -1.12
USP54-203ENST00000418501 JUNDP17535 347 aa8.05□□□□□ -1.12
USP54-203ENST00000418501 UQCRC2P22695 453 aa8.05□□□□□ -1.12
USP54-203ENST00000418501 DGKQP52824 942 aa8.05□□□□□ -1.12
USP54-203ENST00000418501 SMIM11AP58511 58 aa8.05□□□□□ -1.12
USP54-203ENST00000418501 RPL6Q02878 288 aaKnown RBP8.05□□□□□ -1.12
USP54-203ENST00000418501 VAC14Q08AM6 782 aa8.05□□□□□ -1.12
USP54-203ENST00000418501 MESP2Q0VG99 397 aa8.05□□□□□ -1.12
USP54-203ENST00000418501 MYBPC3Q14896 1274 aa8.05□□□□□ -1.12
USP54-203ENST00000418501 TLR1Q15399 786 aa8.05□□□□□ -1.12
USP54-203ENST00000418501 SLC5A12Q1EHB4 618 aa8.05□□□□□ -1.12
USP54-203ENST00000418501 HKDC1Q2TB90 917 aa8.05□□□□□ -1.12
USP54-203ENST00000418501 RUNDC3AQ59EK9 446 aa8.05□□□□□ -1.12
USP54-203ENST00000418501 NAIF1Q69YI7 327 aaPredicted RBP8.05□□□□□ -1.12
USP54-203ENST00000418501 OR4F3Q6IEY1 312 aa8.05□□□□□ -1.12
USP54-203ENST00000418501 DNAJC14Q6Y2X3 702 aaPredicted RBP8.05□□□□□ -1.12
USP54-203ENST00000418501 FAM83HQ6ZRV2 1179 aaPredicted RBP8.05□□□□□ -1.12
USP54-203ENST00000418501 CAMKMTQ7Z624 323 aa8.05□□□□□ -1.12
USP54-203ENST00000418501 SERPINA11Q86U17 422 aa8.05□□□□□ -1.12
USP54-203ENST00000418501 OR4E2Q8NGC2 313 aa8.05□□□□□ -1.12
USP54-203ENST00000418501 C16orf78Q8WTQ4 265 aa8.05□□□□□ -1.12
USP54-203ENST00000418501 PRAP1Q96NZ9 151 aa8.05□□□□□ -1.12
USP54-203ENST00000418501 ZNF607Q96SK3 696 aa8.05□□□□□ -1.12
USP54-203ENST00000418501 SLC38A3Q99624 504 aa8.05□□□□□ -1.12
USP54-203ENST00000418501 ARMC7Q9H6L4 198 aa8.05□□□□□ -1.12
USP54-203ENST00000418501 FARSBQ9NSD9 589 aaKnown RBP8.05□□□□□ -1.12
USP54-203ENST00000418501 SERGEFQ9UGK8 458 aa8.05□□□□□ -1.12
USP54-203ENST00000418501 CD300AQ9UGN4 299 aa8.05□□□□□ -1.12
USP54-203ENST00000418501 C1orf226A1L170 272 aa8.05□□□□□ -1.12
USP54-203ENST00000418501 TBX19O60806 448 aa8.05□□□□□ -1.12
USP54-203ENST00000418501 RETP07949 1114 aa8.05□□□□□ -1.12
USP54-203ENST00000418501 ACSL1P33121 698 aa8.05□□□□□ -1.12
USP54-203ENST00000418501 RPS6KA3P51812 740 aa8.05□□□□□ -1.12
USP54-203ENST00000418501 PRR5P85299 388 aa8.05□□□□□ -1.12
USP54-203ENST00000418501 E2F2Q14209 437 aa8.05□□□□□ -1.12
USP54-203ENST00000418501 CATSPEREQ5SY80 951 aa8.05□□□□□ -1.12
USP54-203ENST00000418501 LRIF1Q5T3J3 769 aa8.05□□□□□ -1.12
USP54-203ENST00000418501 OR4C11Q6IEV9 310 aa8.05□□□□□ -1.12
USP54-203ENST00000418501 ZCCHC8Q6NZY4 707 aaKnown RBP8.05□□□□□ -1.12
USP54-203ENST00000418501 ABI3BPQ7Z7G0 1075 aa8.05□□□□□ -1.12
USP54-203ENST00000418501 OR10G6Q8NH81 332 aa8.05□□□□□ -1.12
USP54-203ENST00000418501 OR1E3Q8WZA6 343 aa8.05□□□□□ -1.12
USP54-203ENST00000418501 ZNF764Q96H86 408 aaPredicted RBP8.05□□□□□ -1.12
USP54-203ENST00000418501 FCRL1Q96LA6 429 aa8.05□□□□□ -1.12
USP54-203ENST00000418501 IL17FQ96PD4 163 aa8.05□□□□□ -1.12
USP54-203ENST00000418501 LGR4Q9BXB1 951 aa8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms