RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 PTPN6P29350 595 aa14.26□□□□□ -0.13
USP4-203ENST00000415188 SLC5A2P31639 672 aa14.26□□□□□ -0.13
USP4-203ENST00000415188 SOX11P35716 441 aa14.26□□□□□ -0.13
USP4-203ENST00000415188 ASMTP46597 345 aa14.26□□□□□ -0.13
USP4-203ENST00000415188 PLIN5Q00G26 463 aa14.26□□□□□ -0.13
USP4-203ENST00000415188 LRRC74AQ0VAA2 488 aa14.26□□□□□ -0.13
USP4-203ENST00000415188 RBM48Q5RL73 367 aaKnown RBP14.26□□□□□ -0.13
USP4-203ENST00000415188 TMEM214Q6NUQ4 689 aaKnown RBP14.26□□□□□ -0.13
USP4-203ENST00000415188 SLC23A3Q6PIS1 610 aa14.26□□□□□ -0.13
USP4-203ENST00000415188 TBPL2Q6SJ96 375 aa14.26□□□□□ -0.13
USP4-203ENST00000415188 ENPP6Q6UWR7 440 aa14.26□□□□□ -0.13
USP4-203ENST00000415188 DNAJC14Q6Y2X3 702 aaPredicted RBP14.26□□□□□ -0.13
USP4-203ENST00000415188 GCNT7Q6ZNI0 430 aa14.26□□□□□ -0.13
USP4-203ENST00000415188 Q6ZVL8 140 aa14.26□□□□□ -0.13
USP4-203ENST00000415188 ZNF765Q7L2R6 523 aa14.26□□□□□ -0.13
USP4-203ENST00000415188 THOC6Q86W42 341 aaKnown RBP14.26□□□□□ -0.13
USP4-203ENST00000415188 CLEC4FQ8N1N0 589 aa14.26□□□□□ -0.13
USP4-203ENST00000415188 OR8J2Q8NGG1 315 aa14.26□□□□□ -0.13
USP4-203ENST00000415188 OR56A3Q8NH54 315 aa14.26□□□□□ -0.13
USP4-203ENST00000415188 CLHC1Q8NHS4 586 aa14.26□□□□□ -0.13
USP4-203ENST00000415188 CYB5D2Q8WUJ1 264 aa14.26□□□□□ -0.13
USP4-203ENST00000415188 NUDT8Q8WV74 236 aa14.26□□□□□ -0.13
USP4-203ENST00000415188 SCAMP4Q969E2 229 aa14.26□□□□□ -0.13
USP4-203ENST00000415188 NCLNQ969V3 563 aa14.26□□□□□ -0.13
USP4-203ENST00000415188 APIPQ96GX9 242 aa14.26□□□□□ -0.13
USP4-203ENST00000415188 APOLD1Q96LR9 279 aa14.26□□□□□ -0.13
USP4-203ENST00000415188 TSSK3Q96PN8 268 aa14.26□□□□□ -0.13
USP4-203ENST00000415188 ZCCHC2Q9C0B9 1178 aaKnown RBP14.26□□□□□ -0.13
USP4-203ENST00000415188 IFT80Q9P2H3 777 aaPredicted RBP14.26□□□□□ -0.13
USP4-203ENST00000415188 SAMD4AQ9UPU9 718 aaKnown RBP14.26□□□□□ -0.13
USP4-203ENST00000415188 CHD8Q9HCK8 2581 aa14.26□□□□□ -0.13
USP4-203ENST00000415188 FADS2P1A8MWK0 482 aa14.25□□□□□ -0.13
USP4-203ENST00000415188 TTC34A8MYJ7 566 aa14.25□□□□□ -0.13
USP4-203ENST00000415188 RFXANKO14593 260 aa14.25□□□□□ -0.13
USP4-203ENST00000415188 NPC1O15118 1278 aa14.25□□□□□ -0.13
USP4-203ENST00000415188 PRAMEF4O60810 478 aa14.25□□□□□ -0.13
USP4-203ENST00000415188 NDUFS2O75306 463 aa14.25□□□□□ -0.13
USP4-203ENST00000415188 PRKD3O94806 890 aa14.25□□□□□ -0.13
USP4-203ENST00000415188 CCNDBP1O95273 360 aa14.25□□□□□ -0.13
USP4-203ENST00000415188 MT-ND1P03886 318 aa14.25□□□□□ -0.13
USP4-203ENST00000415188 EPHX1P07099 455 aa14.25□□□□□ -0.13
USP4-203ENST00000415188 PPIBP23284 216 aaKnown RBP14.25□□□□□ -0.13
USP4-203ENST00000415188 ETV3P41162 512 aa14.25□□□□□ -0.13
USP4-203ENST00000415188 RPS6KA3P51812 740 aa14.25□□□□□ -0.13
USP4-203ENST00000415188 NEK2P51955 445 aa14.25□□□□□ -0.13
USP4-203ENST00000415188 TOP3AQ13472 1001 aaPredicted RBP14.25□□□□□ -0.13
USP4-203ENST00000415188 E2F2Q14209 437 aa14.25□□□□□ -0.13
USP4-203ENST00000415188 EIF4HQ15056 248 aaKnown RBP14.25□□□□□ -0.13
USP4-203ENST00000415188 PGS1Q32NB8 556 aa14.25□□□□□ -0.13
USP4-203ENST00000415188 C11orf91Q3C1V1 193 aa14.25□□□□□ -0.13
USP4-203ENST00000415188 GTDC1Q4AE62 458 aa14.25□□□□□ -0.13
USP4-203ENST00000415188 BCL7AQ4VC05 210 aa14.25□□□□□ -0.13
USP4-203ENST00000415188 ZC3H12BQ5HYM0 836 aaKnown RBP14.25□□□□□ -0.13
USP4-203ENST00000415188 LRRC73Q5JTD7 316 aa14.25□□□□□ -0.13
USP4-203ENST00000415188 OTUD3Q5T2D3 398 aaPredicted RBP14.25□□□□□ -0.13
USP4-203ENST00000415188 PRAMEF9Q5VWM5 478 aa14.25□□□□□ -0.13
USP4-203ENST00000415188 AP1ARQ63HQ0 302 aa14.25□□□□□ -0.13
USP4-203ENST00000415188 AGTRAPQ6RW13 159 aa14.25□□□□□ -0.13
USP4-203ENST00000415188 HIPK1Q86Z02 1210 aa14.25□□□□□ -0.13
USP4-203ENST00000415188 SLC22A15Q8IZD6 547 aa14.25□□□□□ -0.13
USP4-203ENST00000415188 ZNF366Q8N895 744 aa14.25□□□□□ -0.13
USP4-203ENST00000415188 ZNF555Q8NEP9 628 aa14.25□□□□□ -0.13
USP4-203ENST00000415188 OR2I1PQ8NGU4 316 aa14.25□□□□□ -0.13
USP4-203ENST00000415188 WDR20Q8TBZ3 569 aa14.25□□□□□ -0.13
USP4-203ENST00000415188 GFM2Q969S9 779 aaKnown RBP14.25□□□□□ -0.13
USP4-203ENST00000415188 REPS1Q96D71 796 aa14.25□□□□□ -0.13
USP4-203ENST00000415188 GTPBP2Q9BX10 602 aaKnown RBP14.25□□□□□ -0.13
USP4-203ENST00000415188 CARS2Q9HA77 564 aaKnown RBP14.25□□□□□ -0.13
USP4-203ENST00000415188 STOX2Q9P2F5 926 aaPredicted RBP14.25□□□□□ -0.13
USP4-203ENST00000415188 VPS29Q9UBQ0 182 aa14.25□□□□□ -0.13
USP4-203ENST00000415188 GMEB1Q9Y692 573 aa14.25□□□□□ -0.13
USP4-203ENST00000415188 EPG5Q9HCE0 2579 aa14.25□□□□□ -0.13
USP4-203ENST00000415188 PI4KAP42356 2102 aa14.25□□□□□ -0.13
USP4-203ENST00000415188 CEP192Q8TEP8 1941 aa14.25□□□□□ -0.13
USP4-203ENST00000415188 ASCC3Q8N3C0 2202 aaKnown RBP14.25□□□□□ -0.13
USP4-203ENST00000415188 GNGT2O14610 69 aa14.25□□□□□ -0.13
USP4-203ENST00000415188 PRNPP04156 253 aa14.25□□□□□ -0.13
USP4-203ENST00000415188 CTSLP07711 333 aa14.25□□□□□ -0.13
USP4-203ENST00000415188 ELFN1P0C7U0 828 aa14.25□□□□□ -0.13
USP4-203ENST00000415188 JUNBP17275 347 aaPredicted RBP14.25□□□□□ -0.13
USP4-203ENST00000415188 TACR1P25103 407 aa14.25□□□□□ -0.13
USP4-203ENST00000415188 MAOBP27338 520 aa14.25□□□□□ -0.13
USP4-203ENST00000415188 CD6P30203 668 aa14.25□□□□□ -0.13
USP4-203ENST00000415188 HOXD12P35452 270 aa14.25□□□□□ -0.13
USP4-203ENST00000415188 MAGEA2P43356 314 aa14.25□□□□□ -0.13
USP4-203ENST00000415188 CDH15P55291 814 aa14.25□□□□□ -0.13
USP4-203ENST00000415188 ST8SIA6P61647 398 aa14.25□□□□□ -0.13
USP4-203ENST00000415188 PPP2R2BQ00005 443 aa14.25□□□□□ -0.13
USP4-203ENST00000415188 IL18R1Q13478 541 aa14.25□□□□□ -0.13
USP4-203ENST00000415188 NKG7Q16617 165 aa14.25□□□□□ -0.13
USP4-203ENST00000415188 XKR6Q5GH73 641 aa14.25□□□□□ -0.13
USP4-203ENST00000415188 CPZQ66K79 652 aa14.25□□□□□ -0.13
USP4-203ENST00000415188 ZNF773Q6PK81 442 aa14.25□□□□□ -0.13
USP4-203ENST00000415188 LIPIQ6XZB0 460 aa14.25□□□□□ -0.13
USP4-203ENST00000415188 CAMKMTQ7Z624 323 aa14.25□□□□□ -0.13
USP4-203ENST00000415188 THAP5Q7Z6K1 395 aa14.25□□□□□ -0.13
USP4-203ENST00000415188 C8orf59Q8N0T1 100 aaPredicted RBP14.25□□□□□ -0.13
USP4-203ENST00000415188 RASGEF1AQ8N9B8 481 aa14.25□□□□□ -0.13
USP4-203ENST00000415188 DEFB124Q8NES8 71 aa14.25□□□□□ -0.13
USP4-203ENST00000415188 HDAC2Q92769 488 aaKnown RBP14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms