RNA–Protein interactions for RNA: ENST00000406019.1

HMGB1P13-201, Transcript of high mobility group box 1 pseudogene 13, humanhuman

BASIC

Gene HMGB1P13, Length 642 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P13-201ENST00000406019 SLC28A1O00337 649 aa4.45□□□□□ -1.7
HMGB1P13-201ENST00000406019 MAGEB2O15479 319 aa4.45□□□□□ -1.7
HMGB1P13-201ENST00000406019 PTBP3O95758 552 aaKnown RBP4.45□□□□□ -1.7
HMGB1P13-201ENST00000406019 RAF1P04049 648 aa4.45□□□□□ -1.7
HMGB1P13-201ENST00000406019 PGK2P07205 417 aa4.45□□□□□ -1.7
HMGB1P13-201ENST00000406019 FGF5P12034 268 aa4.45□□□□□ -1.7
HMGB1P13-201ENST00000406019 GOT1P17174 413 aa4.45□□□□□ -1.7
HMGB1P13-201ENST00000406019 ARF4P18085 180 aaPredicted RBP4.45□□□□□ -1.7
HMGB1P13-201ENST00000406019 MT3P25713 68 aa4.45□□□□□ -1.7
HMGB1P13-201ENST00000406019 CSTF2P33240 577 aaKnown RBP eCLIP4.45□□□□□ -1.7
HMGB1P13-201ENST00000406019 TKTL1P51854 596 aa4.45□□□□□ -1.7
HMGB1P13-201ENST00000406019 HNRNPFP52597 415 aaKnown RBP4.45□□□□□ -1.7
HMGB1P13-201ENST00000406019 GMFBP60983 142 aa4.45□□□□□ -1.7
HMGB1P13-201ENST00000406019 RPP38P78345 283 aaKnown RBP4.45□□□□□ -1.7
HMGB1P13-201ENST00000406019 GALK2Q01415 458 aa4.45□□□□□ -1.7
HMGB1P13-201ENST00000406019 KLHL30Q0D2K2 578 aa4.45□□□□□ -1.7
HMGB1P13-201ENST00000406019 LCP2Q13094 533 aa4.45□□□□□ -1.7
HMGB1P13-201ENST00000406019 HERC3Q15034 1050 aa4.45□□□□□ -1.7
HMGB1P13-201ENST00000406019 TRADDQ15628 312 aa4.45□□□□□ -1.7
HMGB1P13-201ENST00000406019 ZRSR1Q15695 479 aaKnown RBP4.45□□□□□ -1.7
HMGB1P13-201ENST00000406019 GPR33Q49SQ1 333 aa4.45□□□□□ -1.7
HMGB1P13-201ENST00000406019 SIRPB2Q5JXA9 342 aa4.45□□□□□ -1.7
HMGB1P13-201ENST00000406019 IRAK1BP1Q5VVH5 260 aa4.45□□□□□ -1.7
HMGB1P13-201ENST00000406019 CTR9Q6PD62 1173 aa4.45□□□□□ -1.7
HMGB1P13-201ENST00000406019 CD164L2Q6UWJ8 174 aa4.45□□□□□ -1.7
HMGB1P13-201ENST00000406019 MARK2Q7KZI7 788 aaKnown RBP4.45□□□□□ -1.7
HMGB1P13-201ENST00000406019 SMIM29Q86T20 159 aa4.45□□□□□ -1.7
HMGB1P13-201ENST00000406019 CROCCP3Q8IVE0 287 aa4.45□□□□□ -1.7
HMGB1P13-201ENST00000406019 CDK20Q8IZL9 346 aa4.45□□□□□ -1.7
HMGB1P13-201ENST00000406019 EID3Q8N140 333 aa4.45□□□□□ -1.7
HMGB1P13-201ENST00000406019 FBXW8Q8N3Y1 598 aa4.45□□□□□ -1.7
HMGB1P13-201ENST00000406019 PRSS35Q8N3Z0 413 aa4.45□□□□□ -1.7
HMGB1P13-201ENST00000406019 KLHDC1Q8N7A1 406 aa4.45□□□□□ -1.7
HMGB1P13-201ENST00000406019 CHURC1Q8WUH1 139 aa4.45□□□□□ -1.7
HMGB1P13-201ENST00000406019 C14orf79Q96F83 325 aa4.45□□□□□ -1.7
HMGB1P13-201ENST00000406019 SCRN2Q96FV2 425 aa4.45□□□□□ -1.7
HMGB1P13-201ENST00000406019 NSMCE2Q96MF7 247 aa4.45□□□□□ -1.7
HMGB1P13-201ENST00000406019 URM1Q9BTM9 101 aaKnown RBP4.45□□□□□ -1.7
HMGB1P13-201ENST00000406019 OR2B2Q9GZK3 357 aa4.45□□□□□ -1.7
HMGB1P13-201ENST00000406019 ZBTB20Q9HC78 741 aaPredicted RBP4.45□□□□□ -1.7
HMGB1P13-201ENST00000406019 CHST11Q9NPF2 352 aa4.45□□□□□ -1.7
HMGB1P13-201ENST00000406019 POLE3Q9NRF9 147 aa4.45□□□□□ -1.7
HMGB1P13-201ENST00000406019 FAM207AQ9NSI2 230 aaPredicted RBP4.45□□□□□ -1.7
HMGB1P13-201ENST00000406019 PIGVQ9NUD9 493 aa4.45□□□□□ -1.7
HMGB1P13-201ENST00000406019 DONSONQ9NYP3 566 aa4.45□□□□□ -1.7
HMGB1P13-201ENST00000406019 AURKCQ9UQB9 309 aa4.45□□□□□ -1.7
HMGB1P13-201ENST00000406019 SMC3Q9UQE7 1217 aa4.45□□□□□ -1.7
HMGB1P13-201ENST00000406019 ATP8B3O60423 1300 aa4.45□□□□□ -1.7
HMGB1P13-201ENST00000406019 IGLV5-45A0A087WSX0 123 aa4.44□□□□□ -1.7
HMGB1P13-201ENST00000406019 TRBV5-5A0A0J9YX44 114 aa4.44□□□□□ -1.7
HMGB1P13-201ENST00000406019 A0A1W2PS18 150 aa4.44□□□□□ -1.7
HMGB1P13-201ENST00000406019 MACROD2A1Z1Q3 448 aa4.44□□□□□ -1.7
HMGB1P13-201ENST00000406019 ARHGAP42A6NI28 874 aa4.44□□□□□ -1.7
HMGB1P13-201ENST00000406019 ZNF197O14709 1029 aa4.44□□□□□ -1.7
HMGB1P13-201ENST00000406019 KRT86O43790 486 aa4.44□□□□□ -1.7
HMGB1P13-201ENST00000406019 OR6B1O95007 311 aa4.44□□□□□ -1.7
HMGB1P13-201ENST00000406019 CYP3A5P20815 502 aa4.44□□□□□ -1.7
HMGB1P13-201ENST00000406019 CCND2P30279 289 aa4.44□□□□□ -1.7
HMGB1P13-201ENST00000406019 ALDH1B1P30837 517 aa4.44□□□□□ -1.7
HMGB1P13-201ENST00000406019 SRD5A2P31213 254 aa4.44□□□□□ -1.7
HMGB1P13-201ENST00000406019 SFTPDP35247 375 aa4.44□□□□□ -1.7
HMGB1P13-201ENST00000406019 ACAA2P42765 397 aaKnown RBP4.44□□□□□ -1.7
HMGB1P13-201ENST00000406019 OR3A3P47888 321 aa4.44□□□□□ -1.7
HMGB1P13-201ENST00000406019 CDH11P55287 796 aa4.44□□□□□ -1.7
HMGB1P13-201ENST00000406019 HUNKP57058 714 aa4.44□□□□□ -1.7
HMGB1P13-201ENST00000406019 SLC26A5P58743 744 aa4.44□□□□□ -1.7
HMGB1P13-201ENST00000406019 SLC3A1Q07837 685 aa4.44□□□□□ -1.7
HMGB1P13-201ENST00000406019 ABRQ12979 859 aa4.44□□□□□ -1.7
HMGB1P13-201ENST00000406019 MSLNQ13421 630 aaPredicted RBP4.44□□□□□ -1.7
HMGB1P13-201ENST00000406019 KRT81Q14533 505 aa4.44□□□□□ -1.7
HMGB1P13-201ENST00000406019 ZNF718Q3SXZ3 478 aa4.44□□□□□ -1.7
HMGB1P13-201ENST00000406019 ZNF672Q499Z4 452 aaPredicted RBP4.44□□□□□ -1.7
HMGB1P13-201ENST00000406019 CCDC40Q4G0X9 1142 aa4.44□□□□□ -1.7
HMGB1P13-201ENST00000406019 PDLIM3Q53GG5 364 aaPredicted RBP4.44□□□□□ -1.7
HMGB1P13-201ENST00000406019 OR6B2Q6IFH4 312 aa4.44□□□□□ -1.7
HMGB1P13-201ENST00000406019 WDR88Q6ZMY6 472 aa4.44□□□□□ -1.7
HMGB1P13-201ENST00000406019 ANO5Q75V66 913 aa4.44□□□□□ -1.7
HMGB1P13-201ENST00000406019 STHQ8IWL8 128 aa4.44□□□□□ -1.7
HMGB1P13-201ENST00000406019 RCOR2Q8IZ40 523 aa4.44□□□□□ -1.7
HMGB1P13-201ENST00000406019 TMEM99Q8N816 258 aa4.44□□□□□ -1.7
HMGB1P13-201ENST00000406019 LMNTD1Q8N9Z9 388 aa4.44□□□□□ -1.7
HMGB1P13-201ENST00000406019 ZNF540Q8NDQ6 660 aa4.44□□□□□ -1.7
HMGB1P13-201ENST00000406019 SPATA3Q8NHX4 192 aa4.44□□□□□ -1.7
HMGB1P13-201ENST00000406019 SORCS1Q8WY21 1168 aa4.44□□□□□ -1.7
HMGB1P13-201ENST00000406019 SYAP1Q96A49 352 aaPredicted RBP4.44□□□□□ -1.7
HMGB1P13-201ENST00000406019 RFT1Q96AA3 541 aa4.44□□□□□ -1.7
HMGB1P13-201ENST00000406019 IGSF21Q96ID5 467 aa4.44□□□□□ -1.7
HMGB1P13-201ENST00000406019 IL17FQ96PD4 163 aa4.44□□□□□ -1.7
HMGB1P13-201ENST00000406019 SHARPINQ9H0F6 387 aa4.44□□□□□ -1.7
HMGB1P13-201ENST00000406019 GPN1Q9HCN4 374 aaPredicted RBP4.44□□□□□ -1.7
HMGB1P13-201ENST00000406019 MALT1Q9UDY8 824 aa4.44□□□□□ -1.7
HMGB1P13-201ENST00000406019 TMED7Q9Y3B3 224 aa4.44□□□□□ -1.7
HMGB1P13-201ENST00000406019 PRAC2D3DTV9 90 aa4.43□□□□□ -1.7
HMGB1P13-201ENST00000406019 H3BMM5 538 aa4.43□□□□□ -1.7
HMGB1P13-201ENST00000406019 M0R296 226 aa4.43□□□□□ -1.7
HMGB1P13-201ENST00000406019 PSMD3O43242 534 aa4.43□□□□□ -1.7
HMGB1P13-201ENST00000406019 HSF2BPO75031 334 aa4.43□□□□□ -1.7
HMGB1P13-201ENST00000406019 STBD1O95210 358 aa4.43□□□□□ -1.7
HMGB1P13-201ENST00000406019 NR1D1P20393 614 aa4.43□□□□□ -1.7
HMGB1P13-201ENST00000406019 CA6P23280 308 aa4.43□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms