RNA–Protein interactions for RNA: ENST00000398729.1

VCX3A-202, Transcript of variable charge X-linked 3A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VCX3A, Length 808 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3A-202ENST00000398729 CDKL1Q00532 357 aa12.68□□□□□ -0.38
VCX3A-202ENST00000398729 MEF2AQ02078 507 aaPredicted RBP12.68□□□□□ -0.38
VCX3A-202ENST00000398729 HERC3Q15034 1050 aa12.68□□□□□ -0.38
VCX3A-202ENST00000398729 MINDY4Q4G0A6 757 aa12.68□□□□□ -0.38
VCX3A-202ENST00000398729 TMEM205Q6UW68 189 aa12.68□□□□□ -0.38
VCX3A-202ENST00000398729 LINC00696Q6ZRV3 163 aa12.68□□□□□ -0.38
VCX3A-202ENST00000398729 FRA10AC1Q70Z53 315 aa12.68□□□□□ -0.38
VCX3A-202ENST00000398729 ADAMTSL2Q86TH1 951 aa12.68□□□□□ -0.38
VCX3A-202ENST00000398729 SLC5A11Q8WWX8 675 aa12.68□□□□□ -0.38
VCX3A-202ENST00000398729 NEIL2Q969S2 332 aa12.68□□□□□ -0.38
VCX3A-202ENST00000398729 VN1R1Q9GZP7 353 aa12.68□□□□□ -0.38
VCX3A-202ENST00000398729 ZNF700Q9H0M5 742 aa12.68□□□□□ -0.38
VCX3A-202ENST00000398729 RAB17Q9H0T7 212 aa12.68□□□□□ -0.38
VCX3A-202ENST00000398729 POPDC3Q9HBV1 291 aa12.68□□□□□ -0.38
VCX3A-202ENST00000398729 GPAMQ9HCL2 828 aa12.68□□□□□ -0.38
VCX3A-202ENST00000398729 GRHL1Q9NZI5 618 aa12.68□□□□□ -0.38
VCX3A-202ENST00000398729 HCN3Q9P1Z3 774 aa12.68□□□□□ -0.38
VCX3A-202ENST00000398729 PTGFRNQ9P2B2 879 aa12.68□□□□□ -0.38
VCX3A-202ENST00000398729 CTNNAL1Q9UBT7 734 aa12.68□□□□□ -0.38
VCX3A-202ENST00000398729 OARD1Q9Y530 152 aa12.68□□□□□ -0.38
VCX3A-202ENST00000398729 KCNE2Q9Y6J6 123 aa12.68□□□□□ -0.38
VCX3A-202ENST00000398729 SCN3AQ9NY46 2000 aa12.67□□□□□ -0.38
VCX3A-202ENST00000398729 AKAP9Q99996 3911 aa12.67□□□□□ -0.38
VCX3A-202ENST00000398729 RDH16O75452 317 aa12.67□□□□□ -0.38
VCX3A-202ENST00000398729 JRKO75564 520 aa12.67□□□□□ -0.38
VCX3A-202ENST00000398729 PIAS1O75925 651 aa12.67□□□□□ -0.38
VCX3A-202ENST00000398729 WFS1O76024 890 aa12.67□□□□□ -0.38
VCX3A-202ENST00000398729 KLHL18O94889 574 aa12.67□□□□□ -0.38
VCX3A-202ENST00000398729 SERPIND1P05546 499 aa12.67□□□□□ -0.38
VCX3A-202ENST00000398729 AHRP35869 848 aa12.67□□□□□ -0.38
VCX3A-202ENST00000398729 HNMTP50135 292 aa12.67□□□□□ -0.38
VCX3A-202ENST00000398729 POU4F1Q01851 419 aa12.67□□□□□ -0.38
VCX3A-202ENST00000398729 CAV1Q03135 178 aa12.67□□□□□ -0.38
VCX3A-202ENST00000398729 RGS1Q08116 209 aa12.67□□□□□ -0.38
VCX3A-202ENST00000398729 CDC16Q13042 620 aa12.67□□□□□ -0.38
VCX3A-202ENST00000398729 PWP1Q13610 501 aa12.67□□□□□ -0.38
VCX3A-202ENST00000398729 ZNF169Q14929 603 aaPredicted RBP12.67□□□□□ -0.38
VCX3A-202ENST00000398729 PCOLCEQ15113 449 aa12.67□□□□□ -0.38
VCX3A-202ENST00000398729 TLR1Q15399 786 aa12.67□□□□□ -0.38
VCX3A-202ENST00000398729 CATSPEREQ5SY80 951 aa12.67□□□□□ -0.38
VCX3A-202ENST00000398729 C1QL3Q5VWW1 255 aa12.67□□□□□ -0.38
VCX3A-202ENST00000398729 B3GNTL1Q67FW5 361 aaPredicted RBP12.67□□□□□ -0.38
VCX3A-202ENST00000398729 NIPAL1Q6NVV3 410 aa12.67□□□□□ -0.38
VCX3A-202ENST00000398729 SYT10Q6XYQ8 523 aa12.67□□□□□ -0.38
VCX3A-202ENST00000398729 CYS1Q717R9 158 aa12.67□□□□□ -0.38
VCX3A-202ENST00000398729 THOC6Q86W42 341 aaKnown RBP12.67□□□□□ -0.38
VCX3A-202ENST00000398729 CEP97Q8IW35 865 aa12.67□□□□□ -0.38
VCX3A-202ENST00000398729 C17orf53Q8N3J3 647 aaPredicted RBP12.67□□□□□ -0.38
VCX3A-202ENST00000398729 BRIX1Q8TDN6 353 aaKnown RBP12.67□□□□□ -0.38
VCX3A-202ENST00000398729 ANKRD49Q8WVL7 239 aa12.67□□□□□ -0.38
VCX3A-202ENST00000398729 TSPAN17Q96FV3 270 aa12.67□□□□□ -0.38
VCX3A-202ENST00000398729 TSNARE1Q96NA8 513 aa12.67□□□□□ -0.38
VCX3A-202ENST00000398729 CYTH2Q99418 400 aa12.67□□□□□ -0.38
VCX3A-202ENST00000398729 CPNE1Q99829 537 aa12.67□□□□□ -0.38
VCX3A-202ENST00000398729 AIF1LQ9BQI0 150 aa12.67□□□□□ -0.38
VCX3A-202ENST00000398729 MCMBPQ9BTE3 642 aa12.67□□□□□ -0.38
VCX3A-202ENST00000398729 TUBB6Q9BUF5 446 aa12.67□□□□□ -0.38
VCX3A-202ENST00000398729 SMYD2Q9NRG4 433 aa12.67□□□□□ -0.38
VCX3A-202ENST00000398729 AGPAT4Q9NRZ5 378 aa12.67□□□□□ -0.38
VCX3A-202ENST00000398729 C19orf25Q9UFG5 118 aaPredicted RBP12.67□□□□□ -0.38
VCX3A-202ENST00000398729 ZFP69BQ9UJL9 534 aa12.67□□□□□ -0.38
VCX3A-202ENST00000398729 SLC22A14Q9Y267 594 aa12.67□□□□□ -0.38
VCX3A-202ENST00000398729 NAALAD2Q9Y3Q0 740 aa12.67□□□□□ -0.38
VCX3A-202ENST00000398729 CNTRLQ7Z7A1 2325 aa12.67□□□□□ -0.38
VCX3A-202ENST00000398729 CSMD2Q7Z408 3487 aa12.67□□□□□ -0.38
VCX3A-202ENST00000398729 F8P00451 2351 aa12.66□□□□□ -0.38
VCX3A-202ENST00000398729 ADGRG4Q8IZF6 3080 aa12.66□□□□□ -0.38
VCX3A-202ENST00000398729 CELSR1Q9NYQ6 3014 aa12.66□□□□□ -0.38
VCX3A-202ENST00000398729 TCRBV9S1A1TA0A576 114 aa12.66□□□□□ -0.38
VCX3A-202ENST00000398729 DYTNA2CJ06 578 aa12.66□□□□□ -0.38
VCX3A-202ENST00000398729 CXorf49A8MYA2 514 aaPredicted RBP12.66□□□□□ -0.38
VCX3A-202ENST00000398729 GSTA2P09210 222 aa12.66□□□□□ -0.38
VCX3A-202ENST00000398729 IL10P22301 178 aa12.66□□□□□ -0.38
VCX3A-202ENST00000398729 TSFMP43897 325 aaKnown RBP12.66□□□□□ -0.38
VCX3A-202ENST00000398729 SCTRP47872 440 aa12.66□□□□□ -0.38
VCX3A-202ENST00000398729 AGTR2P50052 363 aa12.66□□□□□ -0.38
VCX3A-202ENST00000398729 EFNA3P52797 238 aa12.66□□□□□ -0.38
VCX3A-202ENST00000398729 ARG2P78540 354 aa12.66□□□□□ -0.38
VCX3A-202ENST00000398729 ELOAQ14241 798 aaKnown RBP12.66□□□□□ -0.38
VCX3A-202ENST00000398729 USP10Q14694 798 aaKnown RBP12.66□□□□□ -0.38
VCX3A-202ENST00000398729 NR6A1Q15406 480 aa12.66□□□□□ -0.38
VCX3A-202ENST00000398729 TSNQ15631 228 aaKnown RBP12.66□□□□□ -0.38
VCX3A-202ENST00000398729 NXPE4Q6UWF7 544 aa12.66□□□□□ -0.38
VCX3A-202ENST00000398729 C3orf62Q6ZUJ4 267 aa12.66□□□□□ -0.38
VCX3A-202ENST00000398729 ABHD13Q7L211 337 aa12.66□□□□□ -0.38
VCX3A-202ENST00000398729 CPEB2Q7Z5Q1 589 aaKnown RBP12.66□□□□□ -0.38
VCX3A-202ENST00000398729 TMPRSS11BQ86T26 416 aa12.66□□□□□ -0.38
VCX3A-202ENST00000398729 PDSS2Q86YH6 399 aa12.66□□□□□ -0.38
VCX3A-202ENST00000398729 SRRM1Q8IYB3 904 aaKnown RBP12.66□□□□□ -0.38
VCX3A-202ENST00000398729 SIRT6Q8N6T7 355 aa12.66□□□□□ -0.38
VCX3A-202ENST00000398729 ZNF740Q8NDX6 193 aa12.66□□□□□ -0.38
VCX3A-202ENST00000398729 NT5CQ8TCD5 201 aa12.66□□□□□ -0.38
VCX3A-202ENST00000398729 PSMF1Q92530 271 aa12.66□□□□□ -0.38
VCX3A-202ENST00000398729 MOCOSQ96EN8 888 aa12.66□□□□□ -0.38
VCX3A-202ENST00000398729 IMMP1LQ96LU5 166 aa12.66□□□□□ -0.38
VCX3A-202ENST00000398729 OR1F2PQ96R84 312 aa12.66□□□□□ -0.38
VCX3A-202ENST00000398729 PHACTR1Q9C0D0 580 aa12.66□□□□□ -0.38
VCX3A-202ENST00000398729 DERL2Q9GZP9 239 aa12.66□□□□□ -0.38
VCX3A-202ENST00000398729 SPNS1Q9H2V7 528 aa12.66□□□□□ -0.38
VCX3A-202ENST00000398729 PELI2Q9HAT8 420 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms