RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 PIK3CGP48736 1102 aa20.61■□□□□ 0.89
CLN3-207ENST00000395653 SNRPNP63162 240 aaKnown RBP20.61■□□□□ 0.89
CLN3-207ENST00000395653 OCA2Q04671 838 aa20.61■□□□□ 0.89
CLN3-207ENST00000395653 SSPNQ14714 243 aa20.61■□□□□ 0.89
CLN3-207ENST00000395653 HERC3Q15034 1050 aa20.61■□□□□ 0.89
CLN3-207ENST00000395653 LINC00303Q3SY05 128 aa20.61■□□□□ 0.89
CLN3-207ENST00000395653 RAB43Q86YS6 212 aa20.61■□□□□ 0.89
CLN3-207ENST00000395653 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP20.61■□□□□ 0.89
CLN3-207ENST00000395653 RIBC1Q8N443 379 aaPredicted RBP20.61■□□□□ 0.89
CLN3-207ENST00000395653 AFAP1L2Q8N4X5 818 aa20.61■□□□□ 0.89
CLN3-207ENST00000395653 TEX9Q8N6V9 391 aa20.61■□□□□ 0.89
CLN3-207ENST00000395653 AMER3Q8N944 861 aa20.61■□□□□ 0.89
CLN3-207ENST00000395653 ZCCHC10Q8TBK6 192 aa20.61■□□□□ 0.89
CLN3-207ENST00000395653 CREB3L4Q8TEY5 395 aa20.61■□□□□ 0.89
CLN3-207ENST00000395653 SLC6A16Q9GZN6 736 aa20.61■□□□□ 0.89
CLN3-207ENST00000395653 ANKHQ9HCJ1 492 aa20.61■□□□□ 0.89
CLN3-207ENST00000395653 MAP4K5Q9Y4K4 846 aa20.61■□□□□ 0.89
CLN3-207ENST00000395653 URADA6NGE7 173 aa20.61■□□□□ 0.89
CLN3-207ENST00000395653 GOLGA8RI6L899 631 aa20.61■□□□□ 0.89
CLN3-207ENST00000395653 SIX3O95343 332 aaPredicted RBP20.61■□□□□ 0.89
CLN3-207ENST00000395653 UMODP07911 640 aa20.61■□□□□ 0.89
CLN3-207ENST00000395653 SERPINA6P08185 405 aa20.61■□□□□ 0.89
CLN3-207ENST00000395653 SBK3P0C264 359 aa20.61■□□□□ 0.89
CLN3-207ENST00000395653 IL1RNP18510 177 aa20.61■□□□□ 0.89
CLN3-207ENST00000395653 CD22P20273 847 aa20.61■□□□□ 0.89
CLN3-207ENST00000395653 CCR10P46092 362 aa20.61■□□□□ 0.89
CLN3-207ENST00000395653 NIPAL1Q6NVV3 410 aa20.61■□□□□ 0.89
CLN3-207ENST00000395653 CYP4X1Q8N118 509 aa20.61■□□□□ 0.89
CLN3-207ENST00000395653 OR9A4Q8NGU2 314 aa20.61■□□□□ 0.89
CLN3-207ENST00000395653 OR2W6PQ8NHA6 318 aa20.61■□□□□ 0.89
CLN3-207ENST00000395653 STT3BQ8TCJ2 826 aa20.61■□□□□ 0.89
CLN3-207ENST00000395653 APOBEC4Q8WW27 367 aaKnown RBP20.61■□□□□ 0.89
CLN3-207ENST00000395653 NACC2Q96BF6 587 aa20.61■□□□□ 0.89
CLN3-207ENST00000395653 IP6K3Q96PC2 410 aa20.61■□□□□ 0.89
CLN3-207ENST00000395653 ARHGAP9Q9BRR9 750 aa20.61■□□□□ 0.89
CLN3-207ENST00000395653 MKKSQ9NPJ1 570 aaPredicted RBP20.61■□□□□ 0.89
CLN3-207ENST00000395653 TMEM216Q9P0N5 145 aa20.61■□□□□ 0.89
CLN3-207ENST00000395653 TRPC4Q9UBN4 977 aa20.61■□□□□ 0.89
CLN3-207ENST00000395653 DCDC2Q9UHG0 476 aa20.61■□□□□ 0.89
CLN3-207ENST00000395653 MAN2B2Q9Y2E5 1009 aa20.61■□□□□ 0.89
CLN3-207ENST00000395653 KCNMB2Q9Y691 235 aa20.61■□□□□ 0.89
CLN3-207ENST00000395653 A0A1W2PPM1 405 aa20.6■□□□□ 0.89
CLN3-207ENST00000395653 E2F3O00716 465 aa20.6■□□□□ 0.89
CLN3-207ENST00000395653 HYAL2Q12891 473 aa20.6■□□□□ 0.89
CLN3-207ENST00000395653 GTF2H2Q13888 395 aa20.6■□□□□ 0.89
CLN3-207ENST00000395653 HIST2H2ACQ16777 129 aaPredicted RBP20.6■□□□□ 0.89
CLN3-207ENST00000395653 HIST2H2AA3Q6FI13 130 aa20.6■□□□□ 0.89
CLN3-207ENST00000395653 GTF2H2CQ6P1K8 395 aa20.6■□□□□ 0.89
CLN3-207ENST00000395653 SH2D5Q6ZV89 423 aa20.6■□□□□ 0.89
CLN3-207ENST00000395653 ABHD13Q7L211 337 aa20.6■□□□□ 0.89
CLN3-207ENST00000395653 PRSS41Q7RTY9 318 aa20.6■□□□□ 0.89
CLN3-207ENST00000395653 UBE2E3Q969T4 207 aa20.6■□□□□ 0.89
CLN3-207ENST00000395653 MIEF2Q96C03 454 aa20.6■□□□□ 0.89
CLN3-207ENST00000395653 PHF21BQ96EK2 531 aa20.6■□□□□ 0.89
CLN3-207ENST00000395653 RHBGQ9H310 441 aa20.6■□□□□ 0.89
CLN3-207ENST00000395653 C14orf105Q9NVL8 296 aa20.6■□□□□ 0.89
CLN3-207ENST00000395653 ANKDD1BA6NHY2 528 aa20.59■□□□□ 0.89
CLN3-207ENST00000395653 LRRC14BA6NHZ5 514 aa20.59■□□□□ 0.89
CLN3-207ENST00000395653 CLEC3AO75596 197 aa20.59■□□□□ 0.89
CLN3-207ENST00000395653 ZGLP1P0C6A0 271 aa20.59■□□□□ 0.89
CLN3-207ENST00000395653 ALOX12P18054 663 aa20.59■□□□□ 0.89
CLN3-207ENST00000395653 EEF1DP29692 281 aaKnown RBP20.59■□□□□ 0.89
CLN3-207ENST00000395653 OTX2P32243 289 aa20.59■□□□□ 0.89
CLN3-207ENST00000395653 FOXL2P58012 376 aa20.59■□□□□ 0.89
CLN3-207ENST00000395653 SKP1P63208 163 aa20.59■□□□□ 0.89
CLN3-207ENST00000395653 IFFO1Q0D2I5 559 aa20.59■□□□□ 0.89
CLN3-207ENST00000395653 PDSS2Q86YH6 399 aa20.59■□□□□ 0.89
CLN3-207ENST00000395653 ROPN1BQ9BZX4 212 aaPredicted RBP20.59■□□□□ 0.89
CLN3-207ENST00000395653 TGIF2Q9GZN2 237 aa20.59■□□□□ 0.89
CLN3-207ENST00000395653 SOX17Q9H6I2 414 aaPredicted RBP20.59■□□□□ 0.89
CLN3-207ENST00000395653 ROPN1Q9HAT0 212 aaPredicted RBP20.59■□□□□ 0.89
CLN3-207ENST00000395653 RALYQ9UKM9 306 aaKnown RBP20.59■□□□□ 0.89
CLN3-207ENST00000395653 ZNF490Q9ULM2 529 aaPredicted RBP20.59■□□□□ 0.89
CLN3-207ENST00000395653 A8MT66 165 aa20.58■□□□□ 0.88
CLN3-207ENST00000395653 UGDHO60701 494 aa20.58■□□□□ 0.88
CLN3-207ENST00000395653 GALR3O60755 368 aaPredicted RBP20.58■□□□□ 0.88
CLN3-207ENST00000395653 GLRA3O75311 464 aa20.58■□□□□ 0.88
CLN3-207ENST00000395653 KLHL18O94889 574 aa20.58■□□□□ 0.88
CLN3-207ENST00000395653 TAC1P20366 129 aa20.58■□□□□ 0.88
CLN3-207ENST00000395653 HNF4AP41235 474 aa20.58■□□□□ 0.88
CLN3-207ENST00000395653 STXBP1P61764 594 aaKnown RBP20.58■□□□□ 0.88
CLN3-207ENST00000395653 VWA2Q5GFL6 755 aa20.58■□□□□ 0.88
CLN3-207ENST00000395653 GOLGA7Q7Z5G4 137 aa20.58■□□□□ 0.88
CLN3-207ENST00000395653 MRGPREQ86SM8 312 aa20.58■□□□□ 0.88
CLN3-207ENST00000395653 APLFQ8IW19 511 aaPredicted RBP20.58■□□□□ 0.88
CLN3-207ENST00000395653 TMEM151BQ8IW70 566 aa20.58■□□□□ 0.88
CLN3-207ENST00000395653 LAS2Q8IYD9 372 aa20.58■□□□□ 0.88
CLN3-207ENST00000395653 UTP15Q8TED0 518 aaKnown RBP20.58■□□□□ 0.88
CLN3-207ENST00000395653 BBC3Q96PG8 261 aaPredicted RBP20.58■□□□□ 0.88
CLN3-207ENST00000395653 YIPF2Q9BWQ6 316 aa20.58■□□□□ 0.88
CLN3-207ENST00000395653 IPPKQ9H8X2 491 aa20.58■□□□□ 0.88
CLN3-207ENST00000395653 SEMA3GQ9NS98 782 aa20.58■□□□□ 0.88
CLN3-207ENST00000395653 PCTPQ9UKL6 214 aa20.58■□□□□ 0.88
CLN3-207ENST00000395653 NAALAD2Q9Y3Q0 740 aa20.58■□□□□ 0.88
CLN3-207ENST00000395653 TLDC2A0PJX2 215 aa20.57■□□□□ 0.88
CLN3-207ENST00000395653 FOXO6A8MYZ6 492 aa20.57■□□□□ 0.88
CLN3-207ENST00000395653 SGK494L7N484 410 aa20.57■□□□□ 0.88
CLN3-207ENST00000395653 IGHEP01854 428 aa20.57■□□□□ 0.88
CLN3-207ENST00000395653 RPS17P08708 135 aaKnown RBP20.57■□□□□ 0.88
CLN3-207ENST00000395653 ZNF888P0CJ79 500 aaPredicted RBP20.57■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms