RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 LCTLQ6UWM7 567 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 ENPP7Q6UWV6 458 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 FAM151BQ6UXP7 276 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 SLC30A8Q8IWU4 369 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 SLC38A5Q8WUX1 472 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 BLNKQ8WV28 456 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 DNAJB3Q8WWF6 145 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 AKR1E2Q96JD6 320 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 OSMRQ99650 979 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 BCO2Q9BYV7 579 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 MIOSQ9NXC5 875 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 C17orf113A0A1B0GUU1 675 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 GABARAPH6UMI1 98 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 AQP7O14520 342 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 B4GALT2O60909 372 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 GABARAPO95166 117 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 FADS2O95864 444 aaKnown RBP4.52□□□□□ -1.69
SCN1A-202ENST00000375405 CBX7O95931 251 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 CST1P01037 141 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 ADIGQ0VDE8 80 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 KLF10Q13118 480 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 PPIGQ13427 754 aaKnown RBP eCLIP4.52□□□□□ -1.698e-7■■■□□ 15.7
SCN1A-202ENST00000375405 NR1I3Q14994 352 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 SSX7Q7RTT5 188 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 ERO1BQ86YB8 467 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 SPPL2CQ8IUH8 684 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 GALNT12Q8IXK2 581 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 LRRC34Q8IZ02 419 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 DEFB107AQ8IZN7 70 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 FUKQ8N0W3 1084 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 LSMEM2Q8N112 164 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 TRIB2Q92519 343 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 HS6ST2Q96MM7 605 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 OR2M2Q96R28 347 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 SEMA3CQ99985 751 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 CACNG6Q9BXT2 260 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 NMES1Q9C002 83 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 DCP1AQ9NPI6 582 aaPredicted RBP4.52□□□□□ -1.69
SCN1A-202ENST00000375405 PLCXD1Q9NUJ7 323 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 PNPOQ9NVS9 261 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 RCOR3Q9P2K3 495 aaPredicted RBP4.52□□□□□ -1.69
SCN1A-202ENST00000375405 ZNF230Q9UIE0 474 aaPredicted RBP4.52□□□□□ -1.69
SCN1A-202ENST00000375405 CDC14AQ9UNH5 594 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 TMEM98Q9Y2Y6 226 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 CYP3A7-CYP3A51PA0A087WV96 503 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 SLC16A5O15375 505 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 CYP3A7P24462 503 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 APLNRP35414 380 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 SLC11A1P49279 550 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 GPR68Q15743 365 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 CHRNA6Q15825 494 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 RPL7L1Q6DKI1 246 aaKnown RBP4.51□□□□□ -1.69
SCN1A-202ENST00000375405 ARCQ7LC44 396 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 AKAP14Q86UN6 197 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 TBC1D10CQ8IV04 446 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 MUC15Q8N387 334 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 RAB39BQ96DA2 213 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 IL4I1Q96RQ9 567 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 ARL6Q9H0F7 186 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 SAV1Q9H4B6 383 aaPredicted RBP4.51□□□□□ -1.69
SCN1A-202ENST00000375405 OR2S2Q9NQN1 319 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 SLC39A1Q9NY26 324 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 ZNRF3Q9ULT6 936 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 RAB26Q9ULW5 256 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 KCNE2Q9Y6J6 123 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 UMODL1Q5DID0 1318 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 C11orf98E9PRG8 122 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 PDXKO00764 312 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 EI24O14681 340 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 RGL2O15211 777 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 ATP6V1G2O95670 118 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 BMP1P13497 986 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 CAPN3P20807 821 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 BDNFP23560 247 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 HTR2AP28223 471 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 GKP32189 559 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 FMR1Q06787 632 aaKnown RBP eCLIP4.51□□□□□ -1.69
SCN1A-202ENST00000375405 TNK2Q07912 1038 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 ZNF543Q08ER8 600 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 LYPD8Q6UX82 237 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 MOB2Q70IA6 237 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 ZCCHC9Q8N567 271 aaKnown RBP4.51□□□□□ -1.69
SCN1A-202ENST00000375405 PHOSPHO1Q8TCT1 267 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 LENG9Q96B70 501 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 PWWP2AQ96N64 755 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 DHRS4Q9BTZ2 278 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 MKS1Q9NXB0 559 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 SLC17A6Q9P2U8 582 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 POLLQ9UGP5 575 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 CD84Q9UIB8 345 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 RNF215Q9Y6U7 377 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 PCNX2A6NKB5 2137 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 ZBTB5O15062 677 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 BUD23O43709 281 aaKnown RBP4.51□□□□□ -1.69
SCN1A-202ENST00000375405 PEX11AO75192 247 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 GLRA3O75311 464 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 GLUD1P00367 558 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 PET100P0DJ07 73 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 NR4A1P22736 598 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 CNTFP26441 200 aa4.51□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms