RNA–Protein interactions for RNA: ENST00000373720.3

SNRNP40-202, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 1 (best) BASIC

Gene SNRNP40, Length 1,087 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-202ENST00000373720 TMPRSS11BQ86T26 416 aa8.38□□□□□ -1.07
SNRNP40-202ENST00000373720 RBM23Q86U06 439 aaKnown RBP8.38□□□□□ -1.07
SNRNP40-202ENST00000373720 ZNF547Q8IVP9 402 aa8.38□□□□□ -1.07
SNRNP40-202ENST00000373720 MSRB3Q8IXL7 192 aa8.38□□□□□ -1.07
SNRNP40-202ENST00000373720 CHPFQ8IZ52 775 aa8.38□□□□□ -1.07
SNRNP40-202ENST00000373720 C8orf59Q8N0T1 100 aaPredicted RBP8.38□□□□□ -1.07
SNRNP40-202ENST00000373720 LINC00471Q8N535 108 aa8.38□□□□□ -1.07
SNRNP40-202ENST00000373720 KRTCAP2Q8N6L1 136 aa8.38□□□□□ -1.07
SNRNP40-202ENST00000373720 ZNF513Q8N8E2 541 aaPredicted RBP8.38□□□□□ -1.07
SNRNP40-202ENST00000373720 AVL9Q8NBF6 648 aa8.38□□□□□ -1.07
SNRNP40-202ENST00000373720 C7orf57Q8NEG2 295 aa8.38□□□□□ -1.07
SNRNP40-202ENST00000373720 OR52N2Q8NGI0 321 aa8.38□□□□□ -1.07
SNRNP40-202ENST00000373720 MAGEE2Q8TD90 523 aaPredicted RBP8.38□□□□□ -1.07
SNRNP40-202ENST00000373720 OR5P2Q8WZ92 322 aa8.38□□□□□ -1.07
SNRNP40-202ENST00000373720 HDAC2Q92769 488 aaKnown RBP8.38□□□□□ -1.07
SNRNP40-202ENST00000373720 ZNF566Q969W8 418 aa8.38□□□□□ -1.07
SNRNP40-202ENST00000373720 RGMAQ96B86 450 aa8.38□□□□□ -1.07
SNRNP40-202ENST00000373720 PPCDCQ96CD2 204 aa8.38□□□□□ -1.07
SNRNP40-202ENST00000373720 THAP11Q96EK4 314 aa8.38□□□□□ -1.07
SNRNP40-202ENST00000373720 DTNBP1Q96EV8 351 aa8.38□□□□□ -1.07
SNRNP40-202ENST00000373720 CCDC97Q96F63 343 aaPredicted RBP8.38□□□□□ -1.07
SNRNP40-202ENST00000373720 VPS50Q96JG6 964 aa8.38□□□□□ -1.07
SNRNP40-202ENST00000373720 TSSK3Q96PN8 268 aa8.38□□□□□ -1.07
SNRNP40-202ENST00000373720 SEPHS2Q99611 448 aa8.38□□□□□ -1.07
SNRNP40-202ENST00000373720 EPYCQ99645 322 aa8.38□□□□□ -1.07
SNRNP40-202ENST00000373720 SLC29A1Q99808 456 aa8.38□□□□□ -1.07
SNRNP40-202ENST00000373720 FAIM2Q9BWQ8 316 aa8.38□□□□□ -1.07
SNRNP40-202ENST00000373720 CCNB1IP1Q9NPC3 277 aa8.38□□□□□ -1.07
SNRNP40-202ENST00000373720 TMEM184CQ9NVA4 438 aa8.38□□□□□ -1.07
SNRNP40-202ENST00000373720 GULP1Q9UBP9 304 aa8.38□□□□□ -1.07
SNRNP40-202ENST00000373720 SLC17A4Q9Y2C5 497 aa8.38□□□□□ -1.07
SNRNP40-202ENST00000373720 ZBTB32Q9Y2Y4 487 aaPredicted RBP8.38□□□□□ -1.07
SNRNP40-202ENST00000373720 CEP350Q5VT06 3117 aa8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 C1orf226A1L170 272 aa8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 SAC3D1A6NKF1 404 aa8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 GABRR3A8MPY1 467 aa8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 M0QX08 132 aa8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 EI24O14681 340 aa8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 CAPN5O15484 640 aaPredicted RBP8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 SUV39H1O43463 412 aa8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 PCDH8O95206 1070 aa8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 APBB3O95704 486 aa8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 MTHFD1P11586 935 aaKnown RBP8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 PCNAP12004 261 aa8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 JUNBP17275 347 aaPredicted RBP8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 ENGP17813 658 aa8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 CD22P20273 847 aa8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 DDCP20711 480 aa8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 FPR1P21462 350 aa8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 UQCRC2P22695 453 aa8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 HTR1BP28222 390 aa8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 OXTRP30559 389 aa8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 GSTT1P30711 240 aa8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 DRD3P35462 400 aa8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 PREPP48147 710 aa8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 PXNP49023 591 aaPredicted RBP8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 CDK9P50750 372 aaKnown RBP8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 NEK2P51955 445 aa8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 WNT3P56703 355 aa8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 NUP107P57740 925 aa8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 SMIM11AP58511 58 aa8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 RAB15P59190 212 aa8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 SELENOWP63302 87 aa8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 PRDX1Q06830 199 aaKnown RBP8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 ADAM15Q13444 863 aa8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 SLBPQ14493 270 aaKnown RBP eCLIP8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 RGNQ15493 299 aa8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 HKDC1Q2TB90 917 aa8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 ZBED5Q49AG3 693 aa8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 CYBRD1Q53TN4 286 aa8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 TCEAL5Q5H9L2 206 aa8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 MANEAQ5SRI9 462 aa8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 PRAMEF8Q5VWM4 474 aa8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 KHDRBS2Q5VWX1 349 aaKnown RBP8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 PRAMEF7Q5VXH5 474 aa8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 OR4F3Q6IEY1 312 aa8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 OR2T5Q6IEZ7 315 aa8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 FAM71E1Q6IPT2 247 aa8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 DOK6Q6PKX4 331 aa8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 COMMD6Q7Z4G1 85 aa8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 ADGRD2Q7Z7M1 963 aa8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 TSPYL5Q86VY4 417 aaPredicted RBP8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 HEATR4Q86WZ0 1026 aa8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 NUDT13Q86X67 352 aa8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 ERI1Q8IV48 349 aaKnown RBP8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 SYNPOQ8N3V7 929 aa8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 C1orf52Q8N6N3 182 aaKnown RBP8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 ARL10Q8N8L6 244 aa8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 FAM47BQ8NA70 645 aa8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 OR2L8Q8NGY9 312 aa8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 OR2T29Q8NH02 315 aa8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 PSMA8Q8TAA3 256 aa8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 ZFP90Q8TF47 636 aa8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 NAT14Q8WUY8 206 aa8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 TMBIM1Q969X1 311 aa8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 SH3KBP1Q96B97 665 aa8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 MTFMTQ96DP5 389 aaKnown RBP8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 MTERF1Q99551 399 aaKnown RBP8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 APOL4Q9BPW4 351 aa8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 PSD2Q9BQI7 771 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms