RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 GIPC3Q8TF64 312 aa18.61■□□□□ 0.57
COL9A3-201ENST00000343916 STARD8Q92502 1023 aa18.61■□□□□ 0.57
COL9A3-201ENST00000343916 CIDECQ96AQ7 238 aaPredicted RBP18.61■□□□□ 0.57
COL9A3-201ENST00000343916 BTNL2Q9UIR0 455 aa18.61■□□□□ 0.57
COL9A3-201ENST00000343916 SLC27A6Q9Y2P4 619 aa18.61■□□□□ 0.57
COL9A3-201ENST00000343916 TMEM98Q9Y2Y6 226 aa18.61■□□□□ 0.57
COL9A3-201ENST00000343916 ZNF197O14709 1029 aa18.61■□□□□ 0.57
COL9A3-201ENST00000343916 POP7O75817 140 aaKnown RBP18.61■□□□□ 0.57
COL9A3-201ENST00000343916 FSHRP23945 695 aa18.61■□□□□ 0.57
COL9A3-201ENST00000343916 FMO3P31513 532 aa18.61■□□□□ 0.57
COL9A3-201ENST00000343916 BNIP3Q12983 259 aa18.61■□□□□ 0.57
COL9A3-201ENST00000343916 E2F2Q14209 437 aa18.61■□□□□ 0.57
COL9A3-201ENST00000343916 HNRNPA1L2Q32P51 320 aaKnown RBP18.61■□□□□ 0.57
COL9A3-201ENST00000343916 RFX4Q33E94 735 aa18.61■□□□□ 0.57
COL9A3-201ENST00000343916 BCL7AQ4VC05 210 aa18.61■□□□□ 0.57
COL9A3-201ENST00000343916 COX20Q5RI15 118 aa18.61■□□□□ 0.57
COL9A3-201ENST00000343916 KDM4DQ6B0I6 523 aa18.61■□□□□ 0.57
COL9A3-201ENST00000343916 GTF2IRD2BQ6EKJ0 949 aa18.61■□□□□ 0.57
COL9A3-201ENST00000343916 GTF2IRD2Q86UP8 949 aa18.61■□□□□ 0.57
COL9A3-201ENST00000343916 CACUL1Q86Y37 369 aa18.61■□□□□ 0.57
COL9A3-201ENST00000343916 ZC3H7AQ8IWR0 971 aaKnown RBP18.61■□□□□ 0.57
COL9A3-201ENST00000343916 OR9A1PQ8NGU1 263 aa18.61■□□□□ 0.57
COL9A3-201ENST00000343916 WDR48Q8TAF3 677 aa18.61■□□□□ 0.57
COL9A3-201ENST00000343916 WFIKKN2Q8TEU8 576 aa18.61■□□□□ 0.57
COL9A3-201ENST00000343916 COQ8BQ96D53 544 aa18.61■□□□□ 0.57
COL9A3-201ENST00000343916 EPHX3Q9H6B9 360 aa18.61■□□□□ 0.57
COL9A3-201ENST00000343916 GPATCH2Q9NW75 528 aa18.61■□□□□ 0.57
COL9A3-201ENST00000343916 BLOC1S6Q9UL45 172 aa18.61■□□□□ 0.57
COL9A3-201ENST00000343916 DYRK1BQ9Y463 629 aa18.61■□□□□ 0.57
COL9A3-201ENST00000343916 SOBPA7XYQ1 873 aa18.6■□□□□ 0.57
COL9A3-201ENST00000343916 MAN1A2O60476 641 aa18.6■□□□□ 0.57
COL9A3-201ENST00000343916 OPN1SWP03999 348 aa18.6■□□□□ 0.57
COL9A3-201ENST00000343916 DNAJA1P31689 397 aaKnown RBP18.6■□□□□ 0.57
COL9A3-201ENST00000343916 CRATP43155 626 aa18.6■□□□□ 0.57
COL9A3-201ENST00000343916 CLK3P49761 638 aaKnown RBP18.6■□□□□ 0.57
COL9A3-201ENST00000343916 ZNF763Q0D2J5 394 aa18.6■□□□□ 0.57
COL9A3-201ENST00000343916 GRSF1Q12849 480 aaKnown RBP eCLIP18.6■□□□□ 0.573e-7■■■■□ 19.7
COL9A3-201ENST00000343916 FAM180BQ6P0A1 224 aa18.6■□□□□ 0.57
COL9A3-201ENST00000343916 FAM83HQ6ZRV2 1179 aaPredicted RBP18.6■□□□□ 0.57
COL9A3-201ENST00000343916 OR8D1Q8WZ84 308 aa18.6■□□□□ 0.57
COL9A3-201ENST00000343916 POP5Q969H6 163 aaKnown RBP18.6■□□□□ 0.57
COL9A3-201ENST00000343916 METTL2AQ96IZ6 378 aaKnown RBP18.6■□□□□ 0.57
COL9A3-201ENST00000343916 CSF3RQ99062 836 aa18.6■□□□□ 0.57
COL9A3-201ENST00000343916 ACAT2Q9BWD1 397 aa18.6■□□□□ 0.57
COL9A3-201ENST00000343916 TMEM121BQ9BXQ6 578 aaPredicted RBP18.6■□□□□ 0.57
COL9A3-201ENST00000343916 SIRT5Q9NXA8 310 aa18.6■□□□□ 0.57
COL9A3-201ENST00000343916 HEPACAM2A8MVW5 462 aa18.6■□□□□ 0.57
COL9A3-201ENST00000343916 NOL3O60936 208 aaKnown RBP18.6■□□□□ 0.57
COL9A3-201ENST00000343916 ATP6V1G1O75348 118 aa18.6■□□□□ 0.57
COL9A3-201ENST00000343916 C1GALT1C1LP0DN25 315 aa18.6■□□□□ 0.57
COL9A3-201ENST00000343916 HOXB6P17509 224 aaKnown RBP18.6■□□□□ 0.57
COL9A3-201ENST00000343916 FPR1P21462 350 aa18.6■□□□□ 0.57
COL9A3-201ENST00000343916 RYKP34925 604 aa18.6■□□□□ 0.57
COL9A3-201ENST00000343916 VASPP50552 380 aaPredicted RBP18.6■□□□□ 0.57
COL9A3-201ENST00000343916 FPGSQ05932 587 aa18.6■□□□□ 0.57
COL9A3-201ENST00000343916 VEZF1Q14119 521 aa18.6■□□□□ 0.57
COL9A3-201ENST00000343916 ZC3H12BQ5HYM0 836 aaKnown RBP18.6■□□□□ 0.57
COL9A3-201ENST00000343916 LAIR1Q6GTX8 287 aa18.6■□□□□ 0.57
COL9A3-201ENST00000343916 RTL10Q7L3V2 364 aa18.6■□□□□ 0.57
COL9A3-201ENST00000343916 CAMKMTQ7Z624 323 aa18.6■□□□□ 0.57
COL9A3-201ENST00000343916 MMAAQ8IVH4 418 aaKnown RBP18.6■□□□□ 0.57
COL9A3-201ENST00000343916 PLA2G15Q8NCC3 412 aa18.6■□□□□ 0.57
COL9A3-201ENST00000343916 SMG7Q92540 1137 aaKnown RBP18.6■□□□□ 0.57
COL9A3-201ENST00000343916 FAM129BQ96TA1 746 aa18.6■□□□□ 0.57
COL9A3-201ENST00000343916 SGPP1Q9BX95 441 aa18.6■□□□□ 0.57
COL9A3-201ENST00000343916 ASPSCR1Q9BZE9 553 aa18.6■□□□□ 0.57
COL9A3-201ENST00000343916 ZCCHC2Q9C0B9 1178 aaKnown RBP18.6■□□□□ 0.57
COL9A3-201ENST00000343916 DMRT3Q9NQL9 472 aa18.6■□□□□ 0.57
COL9A3-201ENST00000343916 WARS2Q9UGM6 360 aaKnown RBP18.6■□□□□ 0.57
COL9A3-201ENST00000343916 ACSL6Q9UKU0 697 aa18.6■□□□□ 0.57
COL9A3-201ENST00000343916 GCM2O75603 506 aaPredicted RBP18.59■□□□□ 0.57
COL9A3-201ENST00000343916 PAPLNO95428 1278 aa18.59■□□□□ 0.57
COL9A3-201ENST00000343916 ANGPTL1O95841 491 aa18.59■□□□□ 0.57
COL9A3-201ENST00000343916 C6orf47O95873 294 aa18.59■□□□□ 0.57
COL9A3-201ENST00000343916 ITGAMP11215 1152 aa18.59■□□□□ 0.57
COL9A3-201ENST00000343916 ETFAP13804 333 aa18.59■□□□□ 0.57
COL9A3-201ENST00000343916 TNFRSF1BP20333 461 aa18.59■□□□□ 0.57
COL9A3-201ENST00000343916 MAPK9P45984 424 aa18.59■□□□□ 0.57
COL9A3-201ENST00000343916 PSMD7P51665 324 aa18.59■□□□□ 0.57
COL9A3-201ENST00000343916 KCNJ10P78508 379 aa18.59■□□□□ 0.57
COL9A3-201ENST00000343916 NFATC3Q12968 1075 aa18.59■□□□□ 0.57
COL9A3-201ENST00000343916 PPIGQ13427 754 aaKnown RBP eCLIP18.59■□□□□ 0.572e-23■■■□□ 16.7
COL9A3-201ENST00000343916 ZNF234Q14588 700 aa18.59■□□□□ 0.57
COL9A3-201ENST00000343916 GAB4Q2WGN9 574 aa18.59■□□□□ 0.57
COL9A3-201ENST00000343916 ANXA8L1Q5VT79 327 aa18.59■□□□□ 0.57
COL9A3-201ENST00000343916 LRRC56Q8IYG6 542 aaPredicted RBP18.59■□□□□ 0.57
COL9A3-201ENST00000343916 TANKQ92844 425 aa18.59■□□□□ 0.57
COL9A3-201ENST00000343916 NRBF2Q96F24 287 aa18.59■□□□□ 0.57
COL9A3-201ENST00000343916 NODALQ96S42 347 aa18.59■□□□□ 0.57
COL9A3-201ENST00000343916 RHNO1Q9BSD3 238 aa18.59■□□□□ 0.57
COL9A3-201ENST00000343916 SORBS1Q9BX66 1292 aaKnown RBP18.59■□□□□ 0.57
COL9A3-201ENST00000343916 GABARAPL1Q9H0R8 117 aa18.59■□□□□ 0.57
COL9A3-201ENST00000343916 TRIM39Q9HCM9 518 aa18.59■□□□□ 0.57
COL9A3-201ENST00000343916 THUMPD1Q9NXG2 353 aaKnown RBP18.59■□□□□ 0.57
COL9A3-201ENST00000343916 DEC1Q9P2X7 70 aa18.59■□□□□ 0.57
COL9A3-201ENST00000343916 TMEM229AB2RXF0 380 aa18.59■□□□□ 0.57
COL9A3-201ENST00000343916 INMTO95050 263 aa18.59■□□□□ 0.57
COL9A3-201ENST00000343916 CCNA2P20248 432 aa18.59■□□□□ 0.57
COL9A3-201ENST00000343916 ELP6Q0PNE2 266 aa18.59■□□□□ 0.57
COL9A3-201ENST00000343916 IQCCQ4KMZ1 466 aa18.59■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms