RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 C6orf106Q9H6K1 298 aaPredicted RBP9.78□□□□□ -0.84
USP54-201ENST00000339859 MKKSQ9NPJ1 570 aaPredicted RBP9.78□□□□□ -0.84
USP54-201ENST00000339859 ACOT7O00154 380 aa9.78□□□□□ -0.84
USP54-201ENST00000339859 PLRG1O43660 514 aaKnown RBP9.78□□□□□ -0.84
USP54-201ENST00000339859 TCF3P15923 654 aa9.78□□□□□ -0.84
USP54-201ENST00000339859 CLK1P49759 484 aaKnown RBP9.78□□□□□ -0.84
USP54-201ENST00000339859 INHBCP55103 352 aa9.78□□□□□ -0.84
USP54-201ENST00000339859 EMX2Q04743 252 aa9.78□□□□□ -0.84
USP54-201ENST00000339859 ZNF33BQ06732 778 aa9.78□□□□□ -0.84
USP54-201ENST00000339859 FBXW8Q8N3Y1 598 aa9.78□□□□□ -0.84
USP54-201ENST00000339859 ZNF707Q96C28 371 aaPredicted RBP9.78□□□□□ -0.84
USP54-201ENST00000339859 AKTIPQ9H8T0 292 aa9.78□□□□□ -0.84
USP54-201ENST00000339859 PISDQ9UG56 409 aa9.78□□□□□ -0.84
USP54-201ENST00000339859 PDE10AQ9Y233 779 aa9.78□□□□□ -0.84
USP54-201ENST00000339859 PSAT1Q9Y617 370 aa9.78□□□□□ -0.84
USP54-201ENST00000339859 IRGMA1A4Y4 181 aa9.78□□□□□ -0.84
USP54-201ENST00000339859 NARSO43776 548 aaKnown RBP9.78□□□□□ -0.84
USP54-201ENST00000339859 MATN1P21941 496 aa9.78□□□□□ -0.84
USP54-201ENST00000339859 AGTR2P50052 363 aa9.78□□□□□ -0.84
USP54-201ENST00000339859 SIGLEC14Q08ET2 396 aa9.78□□□□□ -0.84
USP54-201ENST00000339859 MTX3Q5HYI7 312 aa9.78□□□□□ -0.84
USP54-201ENST00000339859 GLYATQ6IB77 296 aa9.78□□□□□ -0.84
USP54-201ENST00000339859 HIST2H2ABQ8IUE6 130 aaPredicted RBP9.78□□□□□ -0.84
USP54-201ENST00000339859 WFDC5Q8TCV5 224 aa9.78□□□□□ -0.84
USP54-201ENST00000339859 LRCH3Q96II8 777 aa9.78□□□□□ -0.84
USP54-201ENST00000339859 ARRDC1-AS1Q9H2J1 176 aa9.78□□□□□ -0.84
USP54-201ENST00000339859 WBP11Q9Y2W2 641 aaKnown RBP9.78□□□□□ -0.84
USP54-201ENST00000339859 N6AMT1Q9Y5N5 214 aa9.78□□□□□ -0.84
USP54-201ENST00000339859 DHRS12A0PJE2 317 aa9.78□□□□□ -0.84
USP54-201ENST00000339859 PRRT4C9JH25 899 aa9.78□□□□□ -0.84
USP54-201ENST00000339859 TMCC2O75069 709 aa9.78□□□□□ -0.84
USP54-201ENST00000339859 ENTPD5O75356 428 aa9.78□□□□□ -0.84
USP54-201ENST00000339859 ATXN1LP0C7T5 689 aaKnown RBP9.78□□□□□ -0.84
USP54-201ENST00000339859 IGFBP6P24592 240 aaPredicted RBP9.78□□□□□ -0.84
USP54-201ENST00000339859 AQP1P29972 269 aa9.78□□□□□ -0.84
USP54-201ENST00000339859 HK3P52790 923 aa9.78□□□□□ -0.84
USP54-201ENST00000339859 CATSPEREQ5SY80 951 aa9.78□□□□□ -0.84
USP54-201ENST00000339859 GRHL2Q6ISB3 625 aa9.78□□□□□ -0.84
USP54-201ENST00000339859 TNFAIP8L2Q6P589 184 aaPredicted RBP9.78□□□□□ -0.84
USP54-201ENST00000339859 TRAF7Q6Q0C0 670 aa9.78□□□□□ -0.84
USP54-201ENST00000339859 ANKRD49Q8WVL7 239 aa9.78□□□□□ -0.84
USP54-201ENST00000339859 PNPLA2Q96AD5 504 aa9.78□□□□□ -0.84
USP54-201ENST00000339859 OLFM1Q99784 485 aa9.78□□□□□ -0.84
USP54-201ENST00000339859 RBCK1Q9BYM8 510 aa9.78□□□□□ -0.84
USP54-201ENST00000339859 RACGAP1Q9H0H5 632 aa9.78□□□□□ -0.84
USP54-201ENST00000339859 RDH14Q9HBH5 336 aa9.78□□□□□ -0.84
USP54-201ENST00000339859 OAS3Q9Y6K5 1087 aaKnown RBP9.78□□□□□ -0.84
USP54-201ENST00000339859 WASF2Q9Y6W5 498 aa9.78□□□□□ -0.84
USP54-201ENST00000339859 ZNF860A6NHJ4 632 aa9.78□□□□□ -0.84
USP54-201ENST00000339859 UGDHO60701 494 aa9.78□□□□□ -0.84
USP54-201ENST00000339859 ARHGEF15O94989 841 aa9.78□□□□□ -0.84
USP54-201ENST00000339859 PDYNP01213 254 aa9.78□□□□□ -0.84
USP54-201ENST00000339859 S100A5P33763 92 aa9.78□□□□□ -0.84
USP54-201ENST00000339859 TYW3Q6IPR3 259 aaKnown RBP9.78□□□□□ -0.84
USP54-201ENST00000339859 ZSCAN2Q7Z7L9 614 aaPredicted RBP9.78□□□□□ -0.84
USP54-201ENST00000339859 C1orf210Q8IVY1 113 aa9.78□□□□□ -0.84
USP54-201ENST00000339859 PGAM4Q8N0Y7 254 aa9.78□□□□□ -0.84
USP54-201ENST00000339859 FAM47BQ8NA70 645 aa9.78□□□□□ -0.84
USP54-201ENST00000339859 OR13H1Q8NG92 308 aa9.78□□□□□ -0.84
USP54-201ENST00000339859 TM9SF4Q92544 642 aa9.78□□□□□ -0.84
USP54-201ENST00000339859 PKMYT1Q99640 499 aa9.78□□□□□ -0.84
USP54-201ENST00000339859 SPATA9Q9BWV2 254 aa9.78□□□□□ -0.84
USP54-201ENST00000339859 VN1R3Q9BXE9 311 aa9.78□□□□□ -0.84
USP54-201ENST00000339859 EPS8L2Q9H6S3 715 aa9.78□□□□□ -0.84
USP54-201ENST00000339859 NENFQ9UMX5 172 aa9.78□□□□□ -0.84
USP54-201ENST00000339859 OR52A4PA6NMU1 304 aa9.77□□□□□ -0.84
USP54-201ENST00000339859 ZBTB11O95625 1053 aaPredicted RBP9.77□□□□□ -0.84
USP54-201ENST00000339859 IGLV3-25P01717 112 aa9.77□□□□□ -0.84
USP54-201ENST00000339859 C8orf89P0DMQ9 161 aa9.77□□□□□ -0.84
USP54-201ENST00000339859 LIPEQ05469 1076 aa9.77□□□□□ -0.84
USP54-201ENST00000339859 TOP3AQ13472 1001 aaPredicted RBP9.77□□□□□ -0.84
USP54-201ENST00000339859 C16orf72Q14CZ0 275 aa9.77□□□□□ -0.84
USP54-201ENST00000339859 DEFB134Q4QY38 66 aa9.77□□□□□ -0.84
USP54-201ENST00000339859 PRSS36Q5K4E3 855 aa9.77□□□□□ -0.84
USP54-201ENST00000339859 DCST1Q5T197 706 aa9.77□□□□□ -0.84
USP54-201ENST00000339859 METTL2BQ6P1Q9 378 aaKnown RBP9.77□□□□□ -0.84
USP54-201ENST00000339859 ADIPOR2Q86V24 386 aa9.77□□□□□ -0.84
USP54-201ENST00000339859 LRRC25Q8N386 305 aaPredicted RBP9.77□□□□□ -0.84
USP54-201ENST00000339859 PGBD5Q8N414 524 aa9.77□□□□□ -0.84
USP54-201ENST00000339859 DTWD2Q8NBA8 298 aa9.77□□□□□ -0.84
USP54-201ENST00000339859 CLEC1AQ8NC01 280 aa9.77□□□□□ -0.84
USP54-201ENST00000339859 GDF15Q99988 308 aa9.77□□□□□ -0.84
USP54-201ENST00000339859 TMEM79Q9BSE2 394 aa9.77□□□□□ -0.84
USP54-201ENST00000339859 ST6GALNAC1Q9NSC7 600 aaPredicted RBP9.77□□□□□ -0.84
USP54-201ENST00000339859 TRNAU1APQ9NX07 287 aaKnown RBP9.77□□□□□ -0.84
USP54-201ENST00000339859 FOXO6A8MYZ6 492 aa9.77□□□□□ -0.85
USP54-201ENST00000339859 PEX1O43933 1283 aa9.77□□□□□ -0.85
USP54-201ENST00000339859 UNC5CO95185 931 aa9.77□□□□□ -0.85
USP54-201ENST00000339859 SYNGR4O95473 234 aa9.77□□□□□ -0.85
USP54-201ENST00000339859 UQCRC2P22695 453 aa9.77□□□□□ -0.85
USP54-201ENST00000339859 XKP51811 444 aa9.77□□□□□ -0.85
USP54-201ENST00000339859 POU6F2P78424 691 aaPredicted RBP9.77□□□□□ -0.85
USP54-201ENST00000339859 LRIT3Q3SXY7 679 aa9.77□□□□□ -0.85
USP54-201ENST00000339859 IFI44LQ53G44 452 aa9.77□□□□□ -0.85
USP54-201ENST00000339859 DEPDC1Q5TB30 811 aa9.77□□□□□ -0.85
USP54-201ENST00000339859 TRIM73Q86UV7 250 aa9.77□□□□□ -0.85
USP54-201ENST00000339859 PLA2G2FQ9BZM2 168 aa9.77□□□□□ -0.85
USP54-201ENST00000339859 GP1BBP13224 206 aa9.77□□□□□ -0.85
USP54-201ENST00000339859 ALOX12P18054 663 aa9.77□□□□□ -0.85
USP54-201ENST00000339859 TIA1P31483 386 aaKnown RBP eCLIP9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms