RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 NAGSQ8N159 534 aa17.63■□□□□ 0.41
USP39-201ENST00000323701 AMER3Q8N944 861 aa17.63■□□□□ 0.41
USP39-201ENST00000323701 CREB3L4Q8TEY5 395 aa17.63■□□□□ 0.41
USP39-201ENST00000323701 ZNF583Q96ND8 569 aa17.63■□□□□ 0.41
USP39-201ENST00000323701 SIRT5Q9NXA8 310 aa17.63■□□□□ 0.41
USP39-201ENST00000323701 MDC1Q14676 2089 aaKnown RBP17.62■□□□□ 0.41
USP39-201ENST00000323701 ISM1B1AKI9 464 aa17.62■□□□□ 0.41
USP39-201ENST00000323701 GRIA3P42263 894 aa17.62■□□□□ 0.41
USP39-201ENST00000323701 C21orf58P58505 322 aa17.62■□□□□ 0.41
USP39-201ENST00000323701 RPL6Q02878 288 aaKnown RBP17.62■□□□□ 0.41
USP39-201ENST00000323701 COL9A2Q14055 689 aaPredicted RBP17.62■□□□□ 0.41
USP39-201ENST00000323701 RUNDC3AQ59EK9 446 aa17.62■□□□□ 0.41
USP39-201ENST00000323701 DEPDC1Q5TB30 811 aa17.62■□□□□ 0.41
USP39-201ENST00000323701 UBE3DQ7Z6J8 389 aa17.62■□□□□ 0.41
USP39-201ENST00000323701 TRIM73Q86UV7 250 aa17.62■□□□□ 0.41
USP39-201ENST00000323701 ZNF761Q86XN6 746 aaPredicted RBP17.62■□□□□ 0.41
USP39-201ENST00000323701 KCTD14Q9BQ13 255 aaPredicted RBP17.62■□□□□ 0.41
USP39-201ENST00000323701 NMRK1Q9NWW6 199 aa17.62■□□□□ 0.41
USP39-201ENST00000323701 OR6C2Q9NZP2 312 aa17.62■□□□□ 0.41
USP39-201ENST00000323701 NIPSNAP3AQ9UFN0 247 aaPredicted RBP17.62■□□□□ 0.41
USP39-201ENST00000323701 A0A0G2JN53 185 aa17.62■□□□□ 0.41
USP39-201ENST00000323701 A0A1W2PR77 199 aa17.62■□□□□ 0.41
USP39-201ENST00000323701 TCRBV3S1A0A5B6 114 aa17.62■□□□□ 0.41
USP39-201ENST00000323701 C4orf51C9J302 202 aa17.62■□□□□ 0.41
USP39-201ENST00000323701 K7ESF4 209 aa17.62■□□□□ 0.41
USP39-201ENST00000323701 PDGFBP01127 241 aaPredicted RBP17.62■□□□□ 0.41
USP39-201ENST00000323701 C8BP07358 591 aa17.62■□□□□ 0.41
USP39-201ENST00000323701 HRH2P25021 359 aa17.62■□□□□ 0.41
USP39-201ENST00000323701 CD27P26842 260 aa17.62■□□□□ 0.41
USP39-201ENST00000323701 SHMT2P34897 504 aa17.62■□□□□ 0.41
USP39-201ENST00000323701 EEFSECP57772 596 aaKnown RBP17.62■□□□□ 0.41
USP39-201ENST00000323701 ZNF763Q0D2J5 394 aa17.62■□□□□ 0.41
USP39-201ENST00000323701 LRIF1Q5T3J3 769 aa17.62■□□□□ 0.41
USP39-201ENST00000323701 ZNF551Q7Z340 670 aaPredicted RBP17.62■□□□□ 0.41
USP39-201ENST00000323701 TAF8Q7Z7C8 310 aa17.62■□□□□ 0.41
USP39-201ENST00000323701 FAM9CQ8IZT9 166 aa17.62■□□□□ 0.41
USP39-201ENST00000323701 OR8J2Q8NGG1 315 aa17.62■□□□□ 0.41
USP39-201ENST00000323701 C16orf78Q8WTQ4 265 aa17.62■□□□□ 0.41
USP39-201ENST00000323701 FCRL4Q96PJ5 515 aa17.62■□□□□ 0.41
USP39-201ENST00000323701 LRRC61Q9BV99 259 aa17.62■□□□□ 0.41
USP39-201ENST00000323701 KCNH6Q9H252 994 aa17.62■□□□□ 0.41
USP39-201ENST00000323701 SRMSQ9H3Y6 488 aa17.62■□□□□ 0.41
USP39-201ENST00000323701 KLHL31Q9H511 634 aa17.62■□□□□ 0.41
USP39-201ENST00000323701 ANGPTL2Q9UKU9 493 aa17.62■□□□□ 0.41
USP39-201ENST00000323701 SPAG17Q6Q759 2223 aa17.62■□□□□ 0.41
USP39-201ENST00000323701 PRMT3O60678 531 aa17.61■□□□□ 0.41
USP39-201ENST00000323701 SERPIND1P05546 499 aa17.61■□□□□ 0.41
USP39-201ENST00000323701 CXCR2P25025 360 aa17.61■□□□□ 0.41
USP39-201ENST00000323701 BSGP35613 385 aa17.61■□□□□ 0.41
USP39-201ENST00000323701 TAS2R50P59544 299 aa17.61■□□□□ 0.41
USP39-201ENST00000323701 SNRPNP63162 240 aaKnown RBP17.61■□□□□ 0.41
USP39-201ENST00000323701 RHDQ02161 417 aa17.61■□□□□ 0.41
USP39-201ENST00000323701 LRRC36Q1X8D7 754 aa17.61■□□□□ 0.41
USP39-201ENST00000323701 MPEG1Q2M385 716 aa17.61■□□□□ 0.41
USP39-201ENST00000323701 LPCAT4Q643R3 524 aa17.61■□□□□ 0.41
USP39-201ENST00000323701 FAM180BQ6P0A1 224 aa17.61■□□□□ 0.41
USP39-201ENST00000323701 PARGQ86W56 976 aa17.61■□□□□ 0.41
USP39-201ENST00000323701 OR10A6Q8NH74 314 aa17.61■□□□□ 0.41
USP39-201ENST00000323701 SLC37A2Q8TED4 501 aa17.61■□□□□ 0.41
USP39-201ENST00000323701 HSPA12BQ96MM6 686 aa17.61■□□□□ 0.41
USP39-201ENST00000323701 MIR1-1HGQ9H1L0 117 aa17.61■□□□□ 0.41
USP39-201ENST00000323701 CPNE7Q9UBL6 633 aa17.61■□□□□ 0.41
USP39-201ENST00000323701 SIT1Q9Y3P8 196 aa17.61■□□□□ 0.41
USP39-201ENST00000323701 A0A096LPI6 279 aa17.6■□□□□ 0.41
USP39-201ENST00000323701 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa17.6■□□□□ 0.41
USP39-201ENST00000323701 PRSS51A0A1B0GVH4 220 aa17.6■□□□□ 0.41
USP39-201ENST00000323701 JUNDP17535 347 aa17.6■□□□□ 0.41
USP39-201ENST00000323701 NDUFS1P28331 727 aa17.6■□□□□ 0.41
USP39-201ENST00000323701 CYP4F3Q08477 520 aa17.6■□□□□ 0.41
USP39-201ENST00000323701 HYAL2Q12891 473 aa17.6■□□□□ 0.41
USP39-201ENST00000323701 PLCL1Q15111 1095 aa17.6■□□□□ 0.41
USP39-201ENST00000323701 PTRH1Q86Y79 214 aaKnown RBP17.6■□□□□ 0.41
USP39-201ENST00000323701 TMEFF1Q8IYR6 380 aa17.6■□□□□ 0.41
USP39-201ENST00000323701 OR8J3Q8NGG0 315 aa17.6■□□□□ 0.41
USP39-201ENST00000323701 ITCHQ96J02 903 aa17.6■□□□□ 0.41
USP39-201ENST00000323701 THUMPD3Q9BV44 507 aaKnown RBP17.6■□□□□ 0.41
USP39-201ENST00000323701 NT5DC2Q9H857 520 aa17.6■□□□□ 0.41
USP39-201ENST00000323701 COPS7BQ9H9Q2 264 aaPredicted RBP17.6■□□□□ 0.41
USP39-201ENST00000323701 RFXANKO14593 260 aa17.6■□□□□ 0.41
USP39-201ENST00000323701 POLR2CP19387 275 aaPredicted RBP17.6■□□□□ 0.41
USP39-201ENST00000323701 UBE2IP63279 158 aaKnown RBP17.6■□□□□ 0.41
USP39-201ENST00000323701 SRSF11Q05519 484 aaKnown RBP17.6■□□□□ 0.41
USP39-201ENST00000323701 FXNQ16595 210 aa17.6■□□□□ 0.41
USP39-201ENST00000323701 FAM71E1Q6IPT2 247 aa17.6■□□□□ 0.41
USP39-201ENST00000323701 ZNF425Q6IV72 752 aa17.6■□□□□ 0.41
USP39-201ENST00000323701 TSSK4Q6SA08 328 aa17.6■□□□□ 0.41
USP39-201ENST00000323701 LPCAT2Q7L5N7 544 aa17.6■□□□□ 0.41
USP39-201ENST00000323701 DGLUCYQ7Z3D6 616 aa17.6■□□□□ 0.41
USP39-201ENST00000323701 CLEC4FQ8N1N0 589 aa17.6■□□□□ 0.41
USP39-201ENST00000323701 DTWD1Q8N5C7 304 aa17.6■□□□□ 0.41
USP39-201ENST00000323701 C1orf216Q8TAB5 229 aa17.6■□□□□ 0.41
USP39-201ENST00000323701 CANT1Q8WVQ1 401 aa17.6■□□□□ 0.41
USP39-201ENST00000323701 PKP2Q99959 881 aa17.6■□□□□ 0.41
USP39-201ENST00000323701 CPPED1Q9BRF8 314 aaPredicted RBP17.6■□□□□ 0.41
USP39-201ENST00000323701 DUSP26Q9BV47 211 aa17.6■□□□□ 0.41
USP39-201ENST00000323701 GSDMCQ9BYG8 508 aa17.6■□□□□ 0.41
USP39-201ENST00000323701 TWSG1Q9GZX9 223 aa17.6■□□□□ 0.41
USP39-201ENST00000323701 ABCG4Q9H172 646 aa17.6■□□□□ 0.41
USP39-201ENST00000323701 RPF2Q9H7B2 306 aaKnown RBP17.6■□□□□ 0.41
USP39-201ENST00000323701 ACTR3BQ9P1U1 418 aa17.6■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms