RNA–Protein interactions for RNA: ENST00000302303.5

RFX3-201, Transcript of regulatory factor X3, humanhuman

TSL 1 (best) BASIC

Gene RFX3, Length 1,522 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-201ENST00000302303 ZNF33BQ06732 778 aa9.04□□□□□ -0.96
RFX3-201ENST00000302303 TUBB3Q13509 450 aa9.04□□□□□ -0.96
RFX3-201ENST00000302303 CAMK2BQ13554 666 aa9.04□□□□□ -0.96
RFX3-201ENST00000302303 PWP1Q13610 501 aa9.04□□□□□ -0.96
RFX3-201ENST00000302303 SLC9B1Q4ZJI4 515 aa9.04□□□□□ -0.96
RFX3-201ENST00000302303 ZC3H12BQ5HYM0 836 aaKnown RBP9.04□□□□□ -0.96
RFX3-201ENST00000302303 DEPDC1Q5TB30 811 aa9.04□□□□□ -0.96
RFX3-201ENST00000302303 TMEM214Q6NUQ4 689 aaKnown RBP9.04□□□□□ -0.96
RFX3-201ENST00000302303 TMPRSS7Q7RTY8 843 aa9.04□□□□□ -0.96
RFX3-201ENST00000302303 PRSS41Q7RTY9 318 aa9.04□□□□□ -0.96
RFX3-201ENST00000302303 ASPGQ86U10 573 aa9.04□□□□□ -0.96
RFX3-201ENST00000302303 TMPRSS12Q86WS5 348 aa9.04□□□□□ -0.96
RFX3-201ENST00000302303 AFAP1L2Q8N4X5 818 aa9.04□□□□□ -0.96
RFX3-201ENST00000302303 AGBL5Q8NDL9 886 aa9.04□□□□□ -0.96
RFX3-201ENST00000302303 SLC13A3Q8WWT9 602 aa9.04□□□□□ -0.96
RFX3-201ENST00000302303 SELENOMQ8WWX9 145 aa9.04□□□□□ -0.96
RFX3-201ENST00000302303 MS4A6EQ96DS6 147 aa9.04□□□□□ -0.96
RFX3-201ENST00000302303 FAM122AQ96E09 287 aa9.04□□□□□ -0.96
RFX3-201ENST00000302303 SEC16BQ96JE7 1060 aa9.04□□□□□ -0.96
RFX3-201ENST00000302303 C10orf90Q96M02 699 aa9.04□□□□□ -0.96
RFX3-201ENST00000302303 OR6C1Q96RD1 312 aa9.04□□□□□ -0.96
RFX3-201ENST00000302303 F2RL3Q96RI0 385 aa9.04□□□□□ -0.96
RFX3-201ENST00000302303 SPRY4Q9C004 299 aa9.04□□□□□ -0.96
RFX3-201ENST00000302303 OR51B5Q9H339 312 aa9.04□□□□□ -0.96
RFX3-201ENST00000302303 BRF2Q9HAW0 419 aa9.04□□□□□ -0.96
RFX3-201ENST00000302303 PRDM7Q9NQW5 492 aa9.04□□□□□ -0.96
RFX3-201ENST00000302303 FBXO8Q9NRD0 319 aa9.04□□□□□ -0.96
RFX3-201ENST00000302303 SOHLH2Q9NX45 425 aa9.04□□□□□ -0.96
RFX3-201ENST00000302303 GIMAP2Q9UG22 337 aa9.04□□□□□ -0.96
RFX3-201ENST00000302303 SNX6Q9UNH7 406 aa9.04□□□□□ -0.96
RFX3-201ENST00000302303 RUVBL1Q9Y265 456 aaKnown RBP9.04□□□□□ -0.96
RFX3-201ENST00000302303 USH1CQ9Y6N9 552 aa9.04□□□□□ -0.96
RFX3-201ENST00000302303 ATP6AP2A0A1C7CYW4 349 aa9.03□□□□□ -0.96
RFX3-201ENST00000302303 GMNCA6NCL1 334 aa9.03□□□□□ -0.96
RFX3-201ENST00000302303 ANKDD1BA6NHY2 528 aa9.03□□□□□ -0.96
RFX3-201ENST00000302303 EFCAB7A8K855 629 aa9.03□□□□□ -0.96
RFX3-201ENST00000302303 B4E171 279 aa9.03□□□□□ -0.96
RFX3-201ENST00000302303 PLPP1O14494 284 aa9.03□□□□□ -0.96
RFX3-201ENST00000302303 LSM1O15116 133 aaKnown RBP9.03□□□□□ -0.96
RFX3-201ENST00000302303 HDAC3O15379 428 aa9.03□□□□□ -0.96
RFX3-201ENST00000302303 FOXS1O43638 330 aa9.03□□□□□ -0.96
RFX3-201ENST00000302303 SH3BGRLO75368 114 aa9.03□□□□□ -0.96
RFX3-201ENST00000302303 SKAP2O75563 359 aaPredicted RBP9.03□□□□□ -0.96
RFX3-201ENST00000302303 ATP6AP2O75787 350 aa9.03□□□□□ -0.96
RFX3-201ENST00000302303 KRT6AP02538 564 aa9.03□□□□□ -0.96
RFX3-201ENST00000302303 KRT6BP04259 564 aa9.03□□□□□ -0.96
RFX3-201ENST00000302303 ITGAXP20702 1163 aa9.03□□□□□ -0.96
RFX3-201ENST00000302303 PRPH2P23942 346 aa9.03□□□□□ -0.96
RFX3-201ENST00000302303 GSTM2P28161 218 aa9.03□□□□□ -0.96
RFX3-201ENST00000302303 HMOX2P30519 316 aa9.03□□□□□ -0.96
RFX3-201ENST00000302303 GRK3P35626 688 aa9.03□□□□□ -0.96
RFX3-201ENST00000302303 ARL1P40616 181 aaPredicted RBP9.03□□□□□ -0.96
RFX3-201ENST00000302303 TSPAN7P41732 249 aa9.03□□□□□ -0.96
RFX3-201ENST00000302303 KRT6CP48668 564 aa9.03□□□□□ -0.96
RFX3-201ENST00000302303 IDH3AP50213 366 aa9.03□□□□□ -0.96
RFX3-201ENST00000302303 HK2P52789 917 aa9.03□□□□□ -0.96
RFX3-201ENST00000302303 RAE1P78406 368 aaKnown RBP9.03□□□□□ -0.96
RFX3-201ENST00000302303 CUL3Q13618 768 aa9.03□□□□□ -0.96
RFX3-201ENST00000302303 PDCD2Q16342 344 aaPredicted RBP9.03□□□□□ -0.96
RFX3-201ENST00000302303 HIST2H2ACQ16777 129 aaPredicted RBP9.03□□□□□ -0.96
RFX3-201ENST00000302303 MANEAQ5SRI9 462 aa9.03□□□□□ -0.96
RFX3-201ENST00000302303 HIST2H2AA3Q6FI13 130 aa9.03□□□□□ -0.96
RFX3-201ENST00000302303 PWWP2BQ6NUJ5 590 aa9.03□□□□□ -0.96
RFX3-201ENST00000302303 EPGNQ6UW88 154 aa9.03□□□□□ -0.96
RFX3-201ENST00000302303 ZNF793Q6ZN11 406 aa9.03□□□□□ -0.96
RFX3-201ENST00000302303 LARP4Q71RC2 724 aaKnown RBP eCLIP9.03□□□□□ -0.96
RFX3-201ENST00000302303 PDSS2Q86YH6 399 aa9.03□□□□□ -0.96
RFX3-201ENST00000302303 CRLF3Q8IUI8 442 aa9.03□□□□□ -0.96
RFX3-201ENST00000302303 TRPV3Q8NET8 790 aa9.03□□□□□ -0.96
RFX3-201ENST00000302303 TTLQ8NG68 377 aa9.03□□□□□ -0.96
RFX3-201ENST00000302303 UTP15Q8TED0 518 aaKnown RBP9.03□□□□□ -0.96
RFX3-201ENST00000302303 CHTF18Q8WVB6 975 aa9.03□□□□□ -0.96
RFX3-201ENST00000302303 UBE2E3Q969T4 207 aa9.03□□□□□ -0.96
RFX3-201ENST00000302303 THOC1Q96FV9 657 aaKnown RBP9.03□□□□□ -0.96
RFX3-201ENST00000302303 CHMP6Q96FZ7 201 aa9.03□□□□□ -0.96
RFX3-201ENST00000302303 APIPQ96GX9 242 aa9.03□□□□□ -0.96
RFX3-201ENST00000302303 QRFPRQ96P65 431 aa9.03□□□□□ -0.96
RFX3-201ENST00000302303 TEFMQ96QE5 360 aaKnown RBP9.03□□□□□ -0.96
RFX3-201ENST00000302303 EBF4Q9BQW3 602 aa9.03□□□□□ -0.96
RFX3-201ENST00000302303 SORBS1Q9BX66 1292 aaKnown RBP9.03□□□□□ -0.96
RFX3-201ENST00000302303 NUF2Q9BZD4 464 aa9.03□□□□□ -0.96
RFX3-201ENST00000302303 ELOVL6Q9H5J4 265 aa9.03□□□□□ -0.96
RFX3-201ENST00000302303 WDR55Q9H6Y2 383 aaPredicted RBP9.03□□□□□ -0.96
RFX3-201ENST00000302303 MEAF6Q9HAF1 191 aa9.03□□□□□ -0.96
RFX3-201ENST00000302303 TMEM184BQ9Y519 407 aaPredicted RBP9.03□□□□□ -0.96
RFX3-201ENST00000302303 FREM2Q5SZK8 3169 aa9.03□□□□□ -0.96
RFX3-201ENST00000302303 TMEM150CB9EJG8 249 aa9.02□□□□□ -0.97
RFX3-201ENST00000302303 SAP18O00422 153 aaKnown RBP9.02□□□□□ -0.97
RFX3-201ENST00000302303 RTCAO00442 366 aaKnown RBP9.02□□□□□ -0.97
RFX3-201ENST00000302303 NDUFS4O43181 175 aa9.02□□□□□ -0.97
RFX3-201ENST00000302303 EIF2S1P05198 315 aaKnown RBP9.02□□□□□ -0.97
RFX3-201ENST00000302303 VIMP08670 466 aaKnown RBP9.02□□□□□ -0.97
RFX3-201ENST00000302303 HSD3B1P14060 373 aa9.02□□□□□ -0.97
RFX3-201ENST00000302303 ZNF28P17035 718 aa9.02□□□□□ -0.97
RFX3-201ENST00000302303 SDHBP21912 280 aa9.02□□□□□ -0.97
RFX3-201ENST00000302303 PTX3P26022 381 aaPredicted RBP9.02□□□□□ -0.97
RFX3-201ENST00000302303 HSD3B2P26439 372 aa9.02□□□□□ -0.97
RFX3-201ENST00000302303 CSTF2P33240 577 aaKnown RBP eCLIP9.02□□□□□ -0.974e-9■■■■□ 25.7
RFX3-201ENST00000302303 BSGP35613 385 aa9.02□□□□□ -0.97
RFX3-201ENST00000302303 CSTF3Q12996 717 aaKnown RBP9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms