RNA–Protein interactions for RNA: ENST00000297979.9

C9orf3-202, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best) BASIC

Gene C9orf3, Length 2,820 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-202ENST00000297979 RIMS3Q9UJD0 308 aa13.68□□□□□ -0.22
C9orf3-202ENST00000297979 PCOLCE2Q9UKZ9 415 aa13.68□□□□□ -0.22
C9orf3-202ENST00000297979 AP3M1Q9Y2T2 418 aa13.68□□□□□ -0.22
C9orf3-202ENST00000297979 LRP4O75096 1905 aa13.68□□□□□ -0.22
C9orf3-202ENST00000297979 PRAMEF33A0A0G2JMD5 474 aa13.68□□□□□ -0.22
C9orf3-202ENST00000297979 ANKDD1BA6NHY2 528 aa13.68□□□□□ -0.22
C9orf3-202ENST00000297979 H7BY64 318 aa13.68□□□□□ -0.22
C9orf3-202ENST00000297979 SAP18O00422 153 aaKnown RBP13.68□□□□□ -0.22
C9orf3-202ENST00000297979 NDUFS1P28331 727 aa13.68□□□□□ -0.22
C9orf3-202ENST00000297979 CD6P30203 668 aa13.68□□□□□ -0.22
C9orf3-202ENST00000297979 HPCAL1P37235 193 aa13.68□□□□□ -0.22
C9orf3-202ENST00000297979 ACTR1BP42025 376 aa13.68□□□□□ -0.22
C9orf3-202ENST00000297979 HNRNPFP52597 415 aaKnown RBP13.68□□□□□ -0.22
C9orf3-202ENST00000297979 ACTR1AP61163 376 aa13.68□□□□□ -0.22
C9orf3-202ENST00000297979 PRDX1Q06830 199 aaKnown RBP13.68□□□□□ -0.22
C9orf3-202ENST00000297979 GAS6Q14393 721 aa13.68□□□□□ -0.22
C9orf3-202ENST00000297979 UBXN2BQ14CS0 331 aa13.68□□□□□ -0.22
C9orf3-202ENST00000297979 GTDC1Q4AE62 458 aa13.68□□□□□ -0.22
C9orf3-202ENST00000297979 SLC30A9Q6PML9 568 aa13.68□□□□□ -0.22
C9orf3-202ENST00000297979 IZUMO2Q6UXV1 221 aa13.68□□□□□ -0.22
C9orf3-202ENST00000297979 Q7L0L9 218 aa13.68□□□□□ -0.22
C9orf3-202ENST00000297979 GOLM1Q8NBJ4 401 aa13.68□□□□□ -0.22
C9orf3-202ENST00000297979 OR13H1Q8NG92 308 aa13.68□□□□□ -0.22
C9orf3-202ENST00000297979 OR2A1Q8NGT9 310 aa13.68□□□□□ -0.22
C9orf3-202ENST00000297979 CCL4L1Q8NHW4 92 aa13.68□□□□□ -0.22
C9orf3-202ENST00000297979 BIRC7Q96CA5 298 aa13.68□□□□□ -0.22
C9orf3-202ENST00000297979 ZNF570Q96NI8 536 aa13.68□□□□□ -0.22
C9orf3-202ENST00000297979 PRAP1Q96NZ9 151 aa13.68□□□□□ -0.22
C9orf3-202ENST00000297979 INPP5KQ9BT40 448 aa13.68□□□□□ -0.22
C9orf3-202ENST00000297979 EFHD1Q9BUP0 239 aa13.68□□□□□ -0.22
C9orf3-202ENST00000297979 THUMPD3Q9BV44 507 aaKnown RBP13.68□□□□□ -0.22
C9orf3-202ENST00000297979 GPR174Q9BXC1 333 aa13.68□□□□□ -0.22
C9orf3-202ENST00000297979 PIF1Q9H611 641 aa13.68□□□□□ -0.22
C9orf3-202ENST00000297979 FAM120CQ9NX05 1096 aaKnown RBP13.68□□□□□ -0.22
C9orf3-202ENST00000297979 TRNAU1APQ9NX07 287 aaKnown RBP13.68□□□□□ -0.22
C9orf3-202ENST00000297979 USP22Q9UPT9 525 aa13.68□□□□□ -0.22
C9orf3-202ENST00000297979 PCDHB3Q9Y5E6 796 aa13.68□□□□□ -0.22
C9orf3-202ENST00000297979 PCDHB14Q9Y5E9 798 aa13.68□□□□□ -0.22
C9orf3-202ENST00000297979 CROCCQ5TZA2 2017 aa13.67□□□□□ -0.22
C9orf3-202ENST00000297979 RFXANKO14593 260 aa13.67□□□□□ -0.22
C9orf3-202ENST00000297979 EML2O95834 649 aa13.67□□□□□ -0.22
C9orf3-202ENST00000297979 ACADSP16219 412 aa13.67□□□□□ -0.22
C9orf3-202ENST00000297979 CMPK2Q5EBM0 449 aa13.67□□□□□ -0.22
C9orf3-202ENST00000297979 IRAK1BP1Q5VVH5 260 aa13.67□□□□□ -0.22
C9orf3-202ENST00000297979 LILRA2Q8N149 483 aa13.67□□□□□ -0.22
C9orf3-202ENST00000297979 SLCO4A1Q96BD0 722 aa13.67□□□□□ -0.22
C9orf3-202ENST00000297979 LTB4R2Q9NPC1 389 aa13.67□□□□□ -0.22
C9orf3-202ENST00000297979 SLC6A13Q9NSD5 602 aa13.67□□□□□ -0.22
C9orf3-202ENST00000297979 ACAD8Q9UKU7 415 aa13.67□□□□□ -0.22
C9orf3-202ENST00000297979 PRUNE2Q8WUY3 3088 aa13.67□□□□□ -0.22
C9orf3-202ENST00000297979 B3GALT4O96024 378 aa13.67□□□□□ -0.22
C9orf3-202ENST00000297979 HOXB9P17482 250 aaPredicted RBP13.67□□□□□ -0.22
C9orf3-202ENST00000297979 ATP6V1C1P21283 382 aa13.67□□□□□ -0.22
C9orf3-202ENST00000297979 OR4D2P58180 307 aa13.67□□□□□ -0.22
C9orf3-202ENST00000297979 LRRC36Q1X8D7 754 aa13.67□□□□□ -0.22
C9orf3-202ENST00000297979 OGFRL1Q5TC84 451 aaPredicted RBP13.67□□□□□ -0.22
C9orf3-202ENST00000297979 CAMKMTQ7Z624 323 aa13.67□□□□□ -0.22
C9orf3-202ENST00000297979 PROSER1Q86XN7 944 aa13.67□□□□□ -0.22
C9orf3-202ENST00000297979 ANKRD53Q8N9V6 530 aa13.67□□□□□ -0.22
C9orf3-202ENST00000297979 WDR48Q8TAF3 677 aa13.67□□□□□ -0.22
C9orf3-202ENST00000297979 NAF1Q96HR8 494 aaKnown RBP13.67□□□□□ -0.22
C9orf3-202ENST00000297979 GBP5Q96PP8 586 aa13.67□□□□□ -0.22
C9orf3-202ENST00000297979 PKP2Q99959 881 aa13.67□□□□□ -0.22
C9orf3-202ENST00000297979 CPPED1Q9BRF8 314 aaPredicted RBP13.67□□□□□ -0.22
C9orf3-202ENST00000297979 KLHL4Q9C0H6 718 aa13.67□□□□□ -0.22
C9orf3-202ENST00000297979 MAGEL2Q9UJ55 1249 aa13.67□□□□□ -0.22
C9orf3-202ENST00000297979 FEZF1A0PJY2 475 aa13.66□□□□□ -0.22
C9orf3-202ENST00000297979 ZNF217O75362 1048 aa13.66□□□□□ -0.22
C9orf3-202ENST00000297979 NCK1P16333 377 aa13.66□□□□□ -0.22
C9orf3-202ENST00000297979 PTPN6P29350 595 aa13.66□□□□□ -0.22
C9orf3-202ENST00000297979 NUDT1P36639 197 aa13.66□□□□□ -0.22
C9orf3-202ENST00000297979 CDKN2CP42773 168 aa13.66□□□□□ -0.22
C9orf3-202ENST00000297979 WNT3P56703 355 aa13.66□□□□□ -0.22
C9orf3-202ENST00000297979 CYP4F2P78329 520 aa13.66□□□□□ -0.22
C9orf3-202ENST00000297979 CSNK1G2P78368 415 aa13.66□□□□□ -0.22
C9orf3-202ENST00000297979 DUOXA1Q1HG43 343 aa13.66□□□□□ -0.22
C9orf3-202ENST00000297979 ADCK2Q7Z695 626 aa13.66□□□□□ -0.22
C9orf3-202ENST00000297979 SLC22A18ASQ8N1D0 253 aa13.66□□□□□ -0.22
C9orf3-202ENST00000297979 CANT1Q8WVQ1 401 aa13.66□□□□□ -0.22
C9orf3-202ENST00000297979 CXorf40BQ96DE9 158 aa13.66□□□□□ -0.22
C9orf3-202ENST00000297979 ZNF583Q96ND8 569 aa13.66□□□□□ -0.22
C9orf3-202ENST00000297979 PRPF18Q99633 342 aaKnown RBP13.66□□□□□ -0.22
C9orf3-202ENST00000297979 IKZF5Q9H5V7 419 aa13.66□□□□□ -0.22
C9orf3-202ENST00000297979 AHSPQ9NZD4 102 aa13.66□□□□□ -0.22
C9orf3-202ENST00000297979 DGKBQ9Y6T7 804 aa13.66□□□□□ -0.22
C9orf3-202ENST00000297979 DHRS12A0PJE2 317 aa13.66□□□□□ -0.22
C9orf3-202ENST00000297979 KRBA1A5PL33 1030 aa13.66□□□□□ -0.22
C9orf3-202ENST00000297979 FAM25EA8MYX2 175 aa13.66□□□□□ -0.22
C9orf3-202ENST00000297979 SEMA3DO95025 777 aa13.66□□□□□ -0.22
C9orf3-202ENST00000297979 LAMP1P11279 417 aa13.66□□□□□ -0.22
C9orf3-202ENST00000297979 PSMA4P25789 261 aaKnown RBP13.66□□□□□ -0.22
C9orf3-202ENST00000297979 SHMT2P34897 504 aa13.66□□□□□ -0.22
C9orf3-202ENST00000297979 SOX11P35716 441 aa13.66□□□□□ -0.22
C9orf3-202ENST00000297979 CTAG1AP78358 180 aa13.66□□□□□ -0.22
C9orf3-202ENST00000297979 FZD5Q13467 585 aa13.66□□□□□ -0.22
C9orf3-202ENST00000297979 LRRC23Q53EV4 343 aaPredicted RBP13.66□□□□□ -0.22
C9orf3-202ENST00000297979 CPTPQ5TA50 214 aa13.66□□□□□ -0.22
C9orf3-202ENST00000297979 ANKRD26P1Q6NSI1 321 aa13.66□□□□□ -0.22
C9orf3-202ENST00000297979 SLC9B2Q86UD5 537 aa13.66□□□□□ -0.22
C9orf3-202ENST00000297979 OR2T12Q8NG77 320 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms