RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 ELP6Q0PNE2 266 aa19.28■□□□□ 0.68
VPS53-201ENST00000291074 DHRS4L2Q6PKH6 230 aa19.28■□□□□ 0.68
VPS53-201ENST00000291074 VPS37AQ8NEZ2 397 aa19.28■□□□□ 0.68
VPS53-201ENST00000291074 POP5Q969H6 163 aaKnown RBP19.28■□□□□ 0.68
VPS53-201ENST00000291074 TRIM39Q9HCM9 518 aa19.28■□□□□ 0.68
VPS53-201ENST00000291074 GPATCH2Q9NW75 528 aa19.28■□□□□ 0.68
VPS53-201ENST00000291074 SIRT5Q9NXA8 310 aa19.28■□□□□ 0.68
VPS53-201ENST00000291074 ACSL6Q9UKU0 697 aa19.28■□□□□ 0.68
VPS53-201ENST00000291074 BAG5Q9UL15 447 aa19.28■□□□□ 0.68
VPS53-201ENST00000291074 ITGAMP11215 1152 aa19.28■□□□□ 0.68
VPS53-201ENST00000291074 DNAJA1P31689 397 aaKnown RBP19.28■□□□□ 0.68
VPS53-201ENST00000291074 ZNF763Q0D2J5 394 aa19.28■□□□□ 0.68
VPS53-201ENST00000291074 CDK5R2Q13319 367 aa19.28■□□□□ 0.68
VPS53-201ENST00000291074 RFX4Q33E94 735 aa19.28■□□□□ 0.68
VPS53-201ENST00000291074 ANXA8L1Q5VT79 327 aa19.28■□□□□ 0.68
VPS53-201ENST00000291074 LAIR1Q6GTX8 287 aa19.28■□□□□ 0.68
VPS53-201ENST00000291074 TMIEQ8NEW7 156 aa19.28■□□□□ 0.68
VPS53-201ENST00000291074 SLC5A11Q8WWX8 675 aa19.28■□□□□ 0.68
VPS53-201ENST00000291074 ACAT2Q9BWD1 397 aa19.28■□□□□ 0.68
VPS53-201ENST00000291074 SORBS1Q9BX66 1292 aaKnown RBP19.28■□□□□ 0.68
VPS53-201ENST00000291074 TMEM121BQ9BXQ6 578 aaPredicted RBP19.28■□□□□ 0.68
VPS53-201ENST00000291074 GCM2O75603 506 aaPredicted RBP19.28■□□□□ 0.68
VPS53-201ENST00000291074 C6orf47O95873 294 aa19.28■□□□□ 0.68
VPS53-201ENST00000291074 OPN1SWP03999 348 aa19.28■□□□□ 0.68
VPS53-201ENST00000291074 ETFAP13804 333 aa19.28■□□□□ 0.68
VPS53-201ENST00000291074 HOXB6P17509 224 aaKnown RBP19.28■□□□□ 0.68
VPS53-201ENST00000291074 FPR1P21462 350 aa19.28■□□□□ 0.68
VPS53-201ENST00000291074 FMO3P31513 532 aa19.28■□□□□ 0.68
VPS53-201ENST00000291074 PLA2G16P53816 162 aa19.28■□□□□ 0.68
VPS53-201ENST00000291074 GRSF1Q12849 480 aaKnown RBP eCLIP19.28■□□□□ 0.684e-9■■■■■ 30.8
VPS53-201ENST00000291074 VEZF1Q14119 521 aa19.28■□□□□ 0.68
VPS53-201ENST00000291074 ELAVL3Q14576 367 aaKnown RBP19.28■□□□□ 0.68
VPS53-201ENST00000291074 ZC3H12BQ5HYM0 836 aaKnown RBP19.28■□□□□ 0.68
VPS53-201ENST00000291074 KDM4DQ6B0I6 523 aa19.28■□□□□ 0.68
VPS53-201ENST00000291074 GTF2IRD2BQ6EKJ0 949 aa19.28■□□□□ 0.68
VPS53-201ENST00000291074 GTF2IRD2Q86UP8 949 aa19.28■□□□□ 0.68
VPS53-201ENST00000291074 ARMC5Q96C12 935 aa19.28■□□□□ 0.68
VPS53-201ENST00000291074 REPS1Q96D71 796 aa19.28■□□□□ 0.68
VPS53-201ENST00000291074 ASPSCR1Q9BZE9 553 aa19.28■□□□□ 0.68
VPS53-201ENST00000291074 ZDHHC5Q9C0B5 715 aa19.28■□□□□ 0.68
VPS53-201ENST00000291074 CCDC90BQ9GZT6 254 aa19.28■□□□□ 0.68
VPS53-201ENST00000291074 REEP4Q9H6H4 257 aa19.28■□□□□ 0.68
VPS53-201ENST00000291074 LMCD1Q9NZU5 365 aa19.28■□□□□ 0.68
VPS53-201ENST00000291074 FAF1Q9UNN5 650 aaPredicted RBP19.28■□□□□ 0.68
VPS53-201ENST00000291074 hCG_2014768A0A024R1R8 64 aa19.27■□□□□ 0.68
VPS53-201ENST00000291074 TMEM229AB2RXF0 380 aa19.27■□□□□ 0.68
VPS53-201ENST00000291074 KLHL18O94889 574 aa19.27■□□□□ 0.68
VPS53-201ENST00000291074 ZNF182P17025 639 aaPredicted RBP19.27■□□□□ 0.68
VPS53-201ENST00000291074 TNFRSF1BP20333 461 aa19.27■□□□□ 0.68
VPS53-201ENST00000291074 CRATP43155 626 aa19.27■□□□□ 0.68
VPS53-201ENST00000291074 GALK1P51570 392 aa19.27■□□□□ 0.68
VPS53-201ENST00000291074 ARHGDIAP52565 204 aa19.27■□□□□ 0.68
VPS53-201ENST00000291074 PNLIPRP1P54315 467 aa19.27■□□□□ 0.68
VPS53-201ENST00000291074 PRSS53Q2L4Q9 553 aa19.27■□□□□ 0.68
VPS53-201ENST00000291074 MPEG1Q2M385 716 aa19.27■□□□□ 0.68
VPS53-201ENST00000291074 IQCCQ4KMZ1 466 aa19.27■□□□□ 0.68
VPS53-201ENST00000291074 GALNT18Q6P9A2 607 aa19.27■□□□□ 0.68
VPS53-201ENST00000291074 C11orf96Q7Z7L8 435 aa19.27■□□□□ 0.68
VPS53-201ENST00000291074 LAS2Q8IYD9 372 aa19.27■□□□□ 0.68
VPS53-201ENST00000291074 MMP21Q8N119 569 aa19.27■□□□□ 0.68
VPS53-201ENST00000291074 OR5AR1Q8NGP9 310 aa19.27■□□□□ 0.68
VPS53-201ENST00000291074 PUM2Q8TB72 1066 aaKnown RBP eCLIP19.27■□□□□ 0.68
VPS53-201ENST00000291074 TBC1D20Q96BZ9 403 aa19.27■□□□□ 0.68
VPS53-201ENST00000291074 EFCAB11Q9BUY7 163 aa19.27■□□□□ 0.68
VPS53-201ENST00000291074 CCDC177Q9NQR7 707 aaPredicted RBP19.27■□□□□ 0.68
VPS53-201ENST00000291074 BLOC1S6Q9UL45 172 aa19.27■□□□□ 0.68
VPS53-201ENST00000291074 MAN1A2O60476 641 aa19.27■□□□□ 0.67
VPS53-201ENST00000291074 NR4A1P22736 598 aa19.27■□□□□ 0.67
VPS53-201ENST00000291074 ACADLP28330 430 aa19.27■□□□□ 0.67
VPS53-201ENST00000291074 GABARAPL2P60520 117 aa19.27■□□□□ 0.67
VPS53-201ENST00000291074 KCNJ10P78508 379 aa19.27■□□□□ 0.67
VPS53-201ENST00000291074 FAM180BQ6P0A1 224 aa19.27■□□□□ 0.67
VPS53-201ENST00000291074 NXPE4Q6UWF7 544 aa19.27■□□□□ 0.67
VPS53-201ENST00000291074 CPA6Q8N4T0 437 aa19.27■□□□□ 0.67
VPS53-201ENST00000291074 WDR34Q96EX3 536 aa19.27■□□□□ 0.67
VPS53-201ENST00000291074 C7orf34Q96L11 122 aa19.27■□□□□ 0.67
VPS53-201ENST00000291074 CSF3RQ99062 836 aa19.27■□□□□ 0.67
VPS53-201ENST00000291074 THUMPD1Q9NXG2 353 aaKnown RBP19.27■□□□□ 0.67
VPS53-201ENST00000291074 ASF1AQ9Y294 204 aa19.27■□□□□ 0.67
VPS53-201ENST00000291074 CFAP20Q9Y6A4 193 aaKnown RBP19.27■□□□□ 0.67
VPS53-201ENST00000291074 KIF26AQ9ULI4 1882 aaPredicted RBP19.27■□□□□ 0.67
VPS53-201ENST00000291074 RNASET2O00584 256 aaKnown RBP19.26■□□□□ 0.67
VPS53-201ENST00000291074 NOL3O60936 208 aaKnown RBP19.26■□□□□ 0.67
VPS53-201ENST00000291074 FSHRP23945 695 aa19.26■□□□□ 0.67
VPS53-201ENST00000291074 RYKP34925 604 aa19.26■□□□□ 0.67
VPS53-201ENST00000291074 MVDP53602 400 aa19.26■□□□□ 0.67
VPS53-201ENST00000291074 ITGA1P56199 1179 aa19.26■□□□□ 0.67
VPS53-201ENST00000291074 UBE3AQ05086 875 aa19.26■□□□□ 0.67
VPS53-201ENST00000291074 C2orf80Q0P641 193 aa19.26■□□□□ 0.67
VPS53-201ENST00000291074 BNIP3Q12983 259 aa19.26■□□□□ 0.67
VPS53-201ENST00000291074 ZNF765Q7L2R6 523 aa19.26■□□□□ 0.67
VPS53-201ENST00000291074 ZC3H7AQ8IWR0 971 aaKnown RBP19.26■□□□□ 0.67
VPS53-201ENST00000291074 OR5AK3PQ8NH89 298 aa19.26■□□□□ 0.67
VPS53-201ENST00000291074 TANKQ92844 425 aa19.26■□□□□ 0.67
VPS53-201ENST00000291074 THAP11Q96EK4 314 aa19.26■□□□□ 0.67
VPS53-201ENST00000291074 RHNO1Q9BSD3 238 aa19.26■□□□□ 0.67
VPS53-201ENST00000291074 REEP1Q9H902 201 aa19.26■□□□□ 0.67
VPS53-201ENST00000291074 ATP6V1HQ9UI12 483 aa19.26■□□□□ 0.67
VPS53-201ENST00000291074 DGKBQ9Y6T7 804 aa19.26■□□□□ 0.67
VPS53-201ENST00000291074 TRPM6Q9BX84 2022 aa19.26■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms