RNA–Protein interactions for RNA: ENST00000261058.2

CCDC54-201, Transcript of coiled-coil domain containing 54, humanhuman

APPRIS P1 BASIC

Gene CCDC54, Length 1,444 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54-201ENST00000261058 HOXC10Q9NYD6 342 aa3.89□□□□□ -1.79
CCDC54-201ENST00000261058 MDFICQ9P1T7 246 aa3.89□□□□□ -1.79
CCDC54-201ENST00000261058 KIF16BQ96L93 1317 aa3.89□□□□□ -1.79
CCDC54-201ENST00000261058 A0A0B4J203 849 aa3.88□□□□□ -1.79
CCDC54-201ENST00000261058 MEIOCA2RUB1 952 aa3.88□□□□□ -1.79
CCDC54-201ENST00000261058 A4D1N5 150 aa3.88□□□□□ -1.79
CCDC54-201ENST00000261058 FPGTO14772 594 aa3.88□□□□□ -1.79
CCDC54-201ENST00000261058 EPHB6O15197 1021 aa3.88□□□□□ -1.79
CCDC54-201ENST00000261058 TEX28O15482 410 aa3.88□□□□□ -1.79
CCDC54-201ENST00000261058 LINC01565O15544 149 aa3.88□□□□□ -1.79
CCDC54-201ENST00000261058 TXNL1O43396 289 aa3.88□□□□□ -1.79
CCDC54-201ENST00000261058 ANKRD34CP0C6C1 535 aa3.88□□□□□ -1.79
CCDC54-201ENST00000261058 PCP11498 1178 aaKnown RBP3.88□□□□□ -1.79
CCDC54-201ENST00000261058 GAP43P17677 238 aa3.88□□□□□ -1.79
CCDC54-201ENST00000261058 ALDH1B1P30837 517 aa3.88□□□□□ -1.79
CCDC54-201ENST00000261058 STIP1P31948 543 aaKnown RBP3.88□□□□□ -1.79
CCDC54-201ENST00000261058 PRPHP41219 470 aa3.88□□□□□ -1.79
CCDC54-201ENST00000261058 MAGEA8P43361 318 aa3.88□□□□□ -1.79
CCDC54-201ENST00000261058 STARD6P59095 220 aa3.88□□□□□ -1.79
CCDC54-201ENST00000261058 CSNK2BP67870 215 aa3.88□□□□□ -1.79
CCDC54-201ENST00000261058 MYL7Q01449 175 aa3.88□□□□□ -1.79
CCDC54-201ENST00000261058 IL10RBQ08334 325 aa3.88□□□□□ -1.79
CCDC54-201ENST00000261058 MRPL28Q13084 256 aaKnown RBP3.88□□□□□ -1.79
CCDC54-201ENST00000261058 OPCMLQ14982 345 aa3.88□□□□□ -1.79
CCDC54-201ENST00000261058 ZNF74Q16587 644 aa3.88□□□□□ -1.79
CCDC54-201ENST00000261058 ZNF674Q2M3X9 581 aa3.88□□□□□ -1.79
CCDC54-201ENST00000261058 FILIP1LQ4L180 1135 aa3.88□□□□□ -1.79
CCDC54-201ENST00000261058 ANKRD20A4Q4UJ75 823 aa3.88□□□□□ -1.79
CCDC54-201ENST00000261058 ANKRD20A8PQ5CZ79 823 aa3.88□□□□□ -1.79
CCDC54-201ENST00000261058 ANKRD20A2Q5SQ80 823 aa3.88□□□□□ -1.79
CCDC54-201ENST00000261058 ANKRD20A1Q5TYW2 823 aa3.88□□□□□ -1.79
CCDC54-201ENST00000261058 ANKRD20A3Q5VUR7 823 aa3.88□□□□□ -1.79
CCDC54-201ENST00000261058 LINC00696Q6ZRV3 163 aa3.88□□□□□ -1.79
CCDC54-201ENST00000261058 RUFY3Q7L099 469 aa3.88□□□□□ -1.79
CCDC54-201ENST00000261058 PHLDB2Q86SQ0 1253 aa3.88□□□□□ -1.79
CCDC54-201ENST00000261058 FAM89BQ8N5H3 189 aa3.88□□□□□ -1.79
CCDC54-201ENST00000261058 C10orf53Q8N6V4 93 aa3.88□□□□□ -1.79
CCDC54-201ENST00000261058 NIPA2Q8N8Q9 360 aa3.88□□□□□ -1.79
CCDC54-201ENST00000261058 LRTM2Q8N967 370 aa3.88□□□□□ -1.79
CCDC54-201ENST00000261058 TMEM178AQ8NBL3 297 aa3.88□□□□□ -1.79
CCDC54-201ENST00000261058 SLC37A3Q8NCC5 494 aa3.88□□□□□ -1.79
CCDC54-201ENST00000261058 DENND6BQ8NEG7 585 aa3.88□□□□□ -1.79
CCDC54-201ENST00000261058 DDHD1Q8NEL9 900 aa3.88□□□□□ -1.79
CCDC54-201ENST00000261058 TRAF3IP1Q8TDR0 691 aaPredicted RBP3.88□□□□□ -1.79
CCDC54-201ENST00000261058 SLC26A7Q8TE54 656 aa3.88□□□□□ -1.79
CCDC54-201ENST00000261058 GRK7Q8WTQ7 553 aa3.88□□□□□ -1.79
CCDC54-201ENST00000261058 AZIN2Q96A70 460 aa3.88□□□□□ -1.79
CCDC54-201ENST00000261058 SNRNP40Q96DI7 357 aaKnown RBP3.88□□□□□ -1.79
CCDC54-201ENST00000261058 GMPPAQ96IJ6 420 aaPredicted RBP3.88□□□□□ -1.79
CCDC54-201ENST00000261058 CABS1Q96KC9 395 aa3.88□□□□□ -1.79
CCDC54-201ENST00000261058 AK8Q96MA6 479 aa3.88□□□□□ -1.79
CCDC54-201ENST00000261058 LZTS2Q9BRK4 669 aa3.88□□□□□ -1.79
CCDC54-201ENST00000261058 FUCA2Q9BTY2 467 aa3.88□□□□□ -1.79
CCDC54-201ENST00000261058 TEX13AQ9BXU3 409 aaPredicted RBP3.88□□□□□ -1.79
CCDC54-201ENST00000261058 TNMDQ9H2S6 317 aa3.88□□□□□ -1.79
CCDC54-201ENST00000261058 IARS2Q9NSE4 1012 aaKnown RBP3.88□□□□□ -1.79
CCDC54-201ENST00000261058 C19orf25Q9UFG5 118 aaPredicted RBP3.88□□□□□ -1.79
CCDC54-201ENST00000261058 PCSK1NQ9UHG2 260 aa3.88□□□□□ -1.79
CCDC54-201ENST00000261058 IGSF1Q8N6C5 1336 aa3.88□□□□□ -1.79
CCDC54-201ENST00000261058 SPAG9O60271 1321 aaKnown RBP3.87□□□□□ -1.79
CCDC54-201ENST00000261058 A0A087WUV0 522 aaPredicted RBP3.87□□□□□ -1.79
CCDC54-201ENST00000261058 TMEM150CB9EJG8 249 aa3.87□□□□□ -1.79
CCDC54-201ENST00000261058 PRSS46E5RG02 174 aa3.87□□□□□ -1.79
CCDC54-201ENST00000261058 H0YAE9 185 aa3.87□□□□□ -1.79
CCDC54-201ENST00000261058 NR5A2O00482 541 aa3.87□□□□□ -1.79
CCDC54-201ENST00000261058 ST8SIA3O43173 380 aa3.87□□□□□ -1.79
CCDC54-201ENST00000261058 EXTL3O43909 919 aa3.87□□□□□ -1.79
CCDC54-201ENST00000261058 PRPSAP2O60256 369 aa3.87□□□□□ -1.79
CCDC54-201ENST00000261058 KIAA0754O94854 1291 aa3.87□□□□□ -1.79
CCDC54-201ENST00000261058 IGLV1-44P01699 117 aa3.87□□□□□ -1.79
CCDC54-201ENST00000261058 OPN1MWP04001 364 aa3.87□□□□□ -1.79
CCDC54-201ENST00000261058 RLN1P04808 185 aa3.87□□□□□ -1.79
CCDC54-201ENST00000261058 HMBSP08397 361 aa3.87□□□□□ -1.79
CCDC54-201ENST00000261058 STAG3L1P0CL83 205 aa3.87□□□□□ -1.79
CCDC54-201ENST00000261058 OPN1MW2P0DN77 364 aa3.87□□□□□ -1.79
CCDC54-201ENST00000261058 OPN1MW3P0DN78 364 aa3.87□□□□□ -1.79
CCDC54-201ENST00000261058 SLC2A2P11168 524 aaPredicted RBP3.87□□□□□ -1.79
CCDC54-201ENST00000261058 ZNF26P17031 533 aaPredicted RBP3.87□□□□□ -1.79
CCDC54-201ENST00000261058 OR3A1P47881 315 aa3.87□□□□□ -1.79
CCDC54-201ENST00000261058 DNA2P51530 1060 aa3.87□□□□□ -1.79
CCDC54-201ENST00000261058 GPC3P51654 580 aa3.87□□□□□ -1.79
CCDC54-201ENST00000261058 OR1D5P58170 312 aa3.87□□□□□ -1.79
CCDC54-201ENST00000261058 PIWIL3Q7Z3Z3 882 aaKnown RBP3.87□□□□□ -1.79
CCDC54-201ENST00000261058 TMEM110Q86TL2 294 aa3.87□□□□□ -1.79
CCDC54-201ENST00000261058 SIAH3Q8IW03 269 aa3.87□□□□□ -1.79
CCDC54-201ENST00000261058 GOLGA6L2Q8N9W4 650 aaPredicted RBP3.87□□□□□ -1.79
CCDC54-201ENST00000261058 UXS1Q8NBZ7 420 aa3.87□□□□□ -1.79
CCDC54-201ENST00000261058 ANKRD20A12PQ8NF67 263 aa3.87□□□□□ -1.79
CCDC54-201ENST00000261058 DBF4BQ8NFT6 615 aa3.87□□□□□ -1.79
CCDC54-201ENST00000261058 OR7G3Q8NG95 312 aa3.87□□□□□ -1.79
CCDC54-201ENST00000261058 ATP6V0A1Q93050 837 aa3.87□□□□□ -1.79
CCDC54-201ENST00000261058 SGF29Q96ES7 293 aa3.87□□□□□ -1.79
CCDC54-201ENST00000261058 SPXQ9BT56 116 aa3.87□□□□□ -1.79
CCDC54-201ENST00000261058 FAM49AQ9H0Q0 323 aaPredicted RBP3.87□□□□□ -1.79
CCDC54-201ENST00000261058 C1orf21Q9H246 121 aa3.87□□□□□ -1.79
CCDC54-201ENST00000261058 UBQLN3Q9H347 655 aa3.87□□□□□ -1.79
CCDC54-201ENST00000261058 TMEM206Q9H813 350 aa3.87□□□□□ -1.79
CCDC54-201ENST00000261058 PPANQ9NQ55 473 aaKnown RBP3.87□□□□□ -1.79
CCDC54-201ENST00000261058 ATAD3AQ9NVI7 634 aa3.87□□□□□ -1.79
CCDC54-201ENST00000261058 VPS18Q9P253 973 aa3.87□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 88.3 ms