RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 ALDH9A1P49189 494 aa20.51■□□□□ 0.87
TRIM28-201ENST00000253024 RGNQ15493 299 aa20.51■□□□□ 0.87
TRIM28-201ENST00000253024 LEXMQ3ZCV2 418 aa20.51■□□□□ 0.87
TRIM28-201ENST00000253024 RNF130Q86XS8 419 aa20.51■□□□□ 0.87
TRIM28-201ENST00000253024 CHPT1Q8WUD6 406 aa20.51■□□□□ 0.87
TRIM28-201ENST00000253024 LZICQ8WZA0 190 aa20.51■□□□□ 0.87
TRIM28-201ENST00000253024 HMG20AQ9NP66 347 aa20.51■□□□□ 0.87
TRIM28-201ENST00000253024 RPS6KA6Q9UK32 745 aa20.51■□□□□ 0.87
TRIM28-201ENST00000253024 SH3BP5O60239 455 aa20.51■□□□□ 0.87
TRIM28-201ENST00000253024 GCM2O75603 506 aaPredicted RBP20.51■□□□□ 0.87
TRIM28-201ENST00000253024 KLK1P06870 262 aa20.51■□□□□ 0.87
TRIM28-201ENST00000253024 IGFBP1P08833 259 aaPredicted RBP20.51■□□□□ 0.87
TRIM28-201ENST00000253024 SLC22A16Q86VW1 577 aa20.51■□□□□ 0.87
TRIM28-201ENST00000253024 PXYLP1Q8TE99 480 aa20.51■□□□□ 0.87
TRIM28-201ENST00000253024 ITFG2Q969R8 447 aa20.51■□□□□ 0.87
TRIM28-201ENST00000253024 DACH2Q96NX9 599 aa20.51■□□□□ 0.87
TRIM28-201ENST00000253024 CTPS2Q9NRF8 586 aa20.51■□□□□ 0.87
TRIM28-201ENST00000253024 GPATCH2Q9NW75 528 aa20.51■□□□□ 0.87
TRIM28-201ENST00000253024 PCDHB11Q9Y5F2 797 aa20.51■□□□□ 0.87
TRIM28-201ENST00000253024 PCDHGA6Q9Y5G7 932 aa20.51■□□□□ 0.87
TRIM28-201ENST00000253024 GON4LQ3T8J9 2241 aa20.51■□□□□ 0.87
TRIM28-201ENST00000253024 GFYI3L273 518 aa20.5■□□□□ 0.87
TRIM28-201ENST00000253024 GFRA2O00451 464 aa20.5■□□□□ 0.87
TRIM28-201ENST00000253024 PCDH17O14917 1159 aa20.5■□□□□ 0.87
TRIM28-201ENST00000253024 SOX14O95416 240 aa20.5■□□□□ 0.87
TRIM28-201ENST00000253024 KCNJ10P78508 379 aa20.5■□□□□ 0.87
TRIM28-201ENST00000253024 DMC1Q14565 340 aa20.5■□□□□ 0.87
TRIM28-201ENST00000253024 EXOC3L2Q2M3D2 409 aa20.5■□□□□ 0.87
TRIM28-201ENST00000253024 C11orf96Q7Z7L8 435 aa20.5■□□□□ 0.87
TRIM28-201ENST00000253024 SERPINA11Q86U17 422 aa20.5■□□□□ 0.87
TRIM28-201ENST00000253024 MEX3DQ86XN8 651 aaKnown RBP20.5■□□□□ 0.87
TRIM28-201ENST00000253024 CBARPQ8N350 705 aaPredicted RBP20.5■□□□□ 0.87
TRIM28-201ENST00000253024 AP2M1Q96CW1 435 aa20.5■□□□□ 0.87
TRIM28-201ENST00000253024 TSEN34Q9BSV6 310 aaKnown RBP20.5■□□□□ 0.87
TRIM28-201ENST00000253024 ABCG4Q9H172 646 aa20.5■□□□□ 0.87
TRIM28-201ENST00000253024 OR2AG1Q9H205 316 aa20.5■□□□□ 0.87
TRIM28-201ENST00000253024 OR51E2Q9H255 320 aa20.5■□□□□ 0.87
TRIM28-201ENST00000253024 SCAMP2O15127 329 aaKnown RBP20.5■□□□□ 0.87
TRIM28-201ENST00000253024 MAGEA2P43356 314 aa20.5■□□□□ 0.87
TRIM28-201ENST00000253024 MAPK8P45983 427 aa20.5■□□□□ 0.87
TRIM28-201ENST00000253024 NKX2-5P52952 324 aaPredicted RBP20.5■□□□□ 0.87
TRIM28-201ENST00000253024 GABARAPL2P60520 117 aa20.5■□□□□ 0.87
TRIM28-201ENST00000253024 TOP3AQ13472 1001 aaPredicted RBP20.5■□□□□ 0.87
TRIM28-201ENST00000253024 SLBPQ14493 270 aaKnown RBP eCLIP20.5■□□□□ 0.87
TRIM28-201ENST00000253024 PRSS53Q2L4Q9 553 aa20.5■□□□□ 0.87
TRIM28-201ENST00000253024 INAVAQ3KP66 663 aa20.5■□□□□ 0.87
TRIM28-201ENST00000253024 TNFAIP8L2Q6P589 184 aaPredicted RBP20.5■□□□□ 0.87
TRIM28-201ENST00000253024 CBLL1Q75N03 491 aa20.5■□□□□ 0.87
TRIM28-201ENST00000253024 EIF3MQ7L2H7 374 aaKnown RBP20.5■□□□□ 0.87
TRIM28-201ENST00000253024 TSEN54Q7Z6J9 526 aaKnown RBP20.5■□□□□ 0.87
TRIM28-201ENST00000253024 FAM124AQ86V42 546 aa20.5■□□□□ 0.87
TRIM28-201ENST00000253024 NPAS3Q8IXF0 933 aa20.5■□□□□ 0.87
TRIM28-201ENST00000253024 FAM217AQ8IXS0 508 aa20.5■□□□□ 0.87
TRIM28-201ENST00000253024 TCEAL8Q8IYN2 117 aa20.5■□□□□ 0.87
TRIM28-201ENST00000253024 MCFD2Q8NI22 146 aa20.5■□□□□ 0.87
TRIM28-201ENST00000253024 WDR20Q8TBZ3 569 aa20.5■□□□□ 0.87
TRIM28-201ENST00000253024 CLP1Q92989 425 aaKnown RBP20.5■□□□□ 0.87
TRIM28-201ENST00000253024 Q96MT0 163 aa20.5■□□□□ 0.87
TRIM28-201ENST00000253024 IL4I1Q96RQ9 567 aa20.5■□□□□ 0.87
TRIM28-201ENST00000253024 SLC35A5Q9BS91 424 aa20.5■□□□□ 0.87
TRIM28-201ENST00000253024 PNMA8CA0A1B0GUJ8 204 aa20.49■□□□□ 0.87
TRIM28-201ENST00000253024 AGAP14A8MT82 685 aa20.49■□□□□ 0.87
TRIM28-201ENST00000253024 ALDH1A1P00352 501 aa20.49■□□□□ 0.87
TRIM28-201ENST00000253024 CBSLP0DN79 551 aa20.49■□□□□ 0.87
TRIM28-201ENST00000253024 CSF2RAP15509 400 aa20.49■□□□□ 0.87
TRIM28-201ENST00000253024 GPX2P18283 190 aa20.49■□□□□ 0.87
TRIM28-201ENST00000253024 CBSP35520 551 aa20.49■□□□□ 0.87
TRIM28-201ENST00000253024 CHI3L1P36222 383 aaPredicted RBP20.49■□□□□ 0.87
TRIM28-201ENST00000253024 C2orf80Q0P641 193 aa20.49■□□□□ 0.87
TRIM28-201ENST00000253024 ZNF846Q147U1 533 aa20.49■□□□□ 0.87
TRIM28-201ENST00000253024 BCDIN3DQ7Z5W3 292 aaKnown RBP20.49■□□□□ 0.87
TRIM28-201ENST00000253024 SPRED2Q7Z698 418 aa20.49■□□□□ 0.87
TRIM28-201ENST00000253024 RNF168Q8IYW5 571 aaPredicted RBP20.49■□□□□ 0.87
TRIM28-201ENST00000253024 ZFYVE19Q96K21 471 aa20.49■□□□□ 0.87
TRIM28-201ENST00000253024 DCSTAMPQ9H295 470 aa20.49■□□□□ 0.87
TRIM28-201ENST00000253024 SCN8AQ9UQD0 1980 aa20.49■□□□□ 0.87
TRIM28-201ENST00000253024 PRAMEF25A6NGN4 478 aa20.49■□□□□ 0.87
TRIM28-201ENST00000253024 TRIM64BA6NI03 449 aa20.49■□□□□ 0.87
TRIM28-201ENST00000253024 GABARAPO95166 117 aa20.49■□□□□ 0.87
TRIM28-201ENST00000253024 TAS2R50P59544 299 aa20.49■□□□□ 0.87
TRIM28-201ENST00000253024 TBPL1P62380 186 aa20.49■□□□□ 0.87
TRIM28-201ENST00000253024 TMEM115Q12893 351 aaPredicted RBP20.49■□□□□ 0.87
TRIM28-201ENST00000253024 DGUOKQ16854 277 aa20.49■□□□□ 0.87
TRIM28-201ENST00000253024 HTR3DQ70Z44 454 aa20.49■□□□□ 0.87
TRIM28-201ENST00000253024 DUSP21Q9H596 190 aa20.49■□□□□ 0.87
TRIM28-201ENST00000253024 NDRG4Q9ULP0 352 aaKnown RBP20.49■□□□□ 0.87
TRIM28-201ENST00000253024 EXO1Q9UQ84 846 aaKnown RBP20.49■□□□□ 0.87
TRIM28-201ENST00000253024 CHD9Q3L8U1 2897 aa20.49■□□□□ 0.87
TRIM28-201ENST00000253024 WASHC1A8K0Z3 465 aa20.49■□□□□ 0.87
TRIM28-201ENST00000253024 CXCL14O95715 111 aa20.49■□□□□ 0.87
TRIM28-201ENST00000253024 HNMTP50135 292 aa20.49■□□□□ 0.87
TRIM28-201ENST00000253024 SRSF11Q05519 484 aaKnown RBP20.49■□□□□ 0.87
TRIM28-201ENST00000253024 CNTN1Q12860 1018 aa20.49■□□□□ 0.87
TRIM28-201ENST00000253024 RFX4Q33E94 735 aa20.49■□□□□ 0.87
TRIM28-201ENST00000253024 CAPN13Q6MZZ7 669 aaPredicted RBP20.49■□□□□ 0.87
TRIM28-201ENST00000253024 WASH2PQ6VEQ5 465 aa20.49■□□□□ 0.87
TRIM28-201ENST00000253024 SFTPA1Q8IWL2 248 aa20.49■□□□□ 0.87
TRIM28-201ENST00000253024 CADM3Q8N126 398 aa20.49■□□□□ 0.87
TRIM28-201ENST00000253024 OR10G2Q8NGC3 310 aa20.49■□□□□ 0.87
TRIM28-201ENST00000253024 RAB8BQ92930 207 aa20.49■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms