RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 PLAGL1Q9UM63 463 aa10.29□□□□□ -0.76
USP28-201ENST00000003302 PRRG1O14668 218 aa10.29□□□□□ -0.76
USP28-201ENST00000003302 RGS10O43665 173 aa10.29□□□□□ -0.76
USP28-201ENST00000003302 CCNDBP1O95273 360 aa10.29□□□□□ -0.76
USP28-201ENST00000003302 RPS3P23396 243 aaKnown RBP eCLIP10.29□□□□□ -0.76
USP28-201ENST00000003302 GABRR2P28476 465 aa10.29□□□□□ -0.76
USP28-201ENST00000003302 GABARAPL2P60520 117 aa10.29□□□□□ -0.76
USP28-201ENST00000003302 KIAA1614Q5VZ46 1190 aa10.29□□□□□ -0.76
USP28-201ENST00000003302 CBLL1Q75N03 491 aa10.29□□□□□ -0.76
USP28-201ENST00000003302 CHST9Q7L1S5 443 aa10.29□□□□□ -0.76
USP28-201ENST00000003302 HUS1BQ8NHY5 278 aa10.29□□□□□ -0.76
USP28-201ENST00000003302 IL17FQ96PD4 163 aa10.29□□□□□ -0.76
USP28-201ENST00000003302 IL4I1Q96RQ9 567 aa10.29□□□□□ -0.76
USP28-201ENST00000003302 CCM2Q9BSQ5 444 aa10.29□□□□□ -0.76
USP28-201ENST00000003302 ACAT2Q9BWD1 397 aa10.29□□□□□ -0.76
USP28-201ENST00000003302 MAP4K5Q9Y4K4 846 aa10.29□□□□□ -0.76
USP28-201ENST00000003302 PCDHGB1Q9Y5G3 927 aa10.29□□□□□ -0.76
USP28-201ENST00000003302 KIF26AQ9ULI4 1882 aaPredicted RBP10.29□□□□□ -0.76
USP28-201ENST00000003302 MTCL1Q9Y4B5 1905 aaKnown RBP10.29□□□□□ -0.76
USP28-201ENST00000003302 NPC1O15118 1278 aa10.29□□□□□ -0.76
USP28-201ENST00000003302 CTSLP07711 333 aa10.29□□□□□ -0.76
USP28-201ENST00000003302 ITGAMP11215 1152 aa10.29□□□□□ -0.76
USP28-201ENST00000003302 TCEA1P23193 301 aaKnown RBP10.29□□□□□ -0.76
USP28-201ENST00000003302 CNTN1Q12860 1018 aa10.29□□□□□ -0.76
USP28-201ENST00000003302 MTAPQ13126 283 aa10.29□□□□□ -0.76
USP28-201ENST00000003302 SPATS1Q496A3 300 aa10.29□□□□□ -0.76
USP28-201ENST00000003302 DESI1Q6ICB0 168 aa10.29□□□□□ -0.76
USP28-201ENST00000003302 CERS6Q6ZMG9 384 aa10.29□□□□□ -0.76
USP28-201ENST00000003302 HORMAD1Q86X24 394 aa10.29□□□□□ -0.76
USP28-201ENST00000003302 SYTL1Q8IYJ3 562 aa10.29□□□□□ -0.76
USP28-201ENST00000003302 NRBF2Q96F24 287 aa10.29□□□□□ -0.76
USP28-201ENST00000003302 PRR14Q9BWN1 585 aa10.29□□□□□ -0.76
USP28-201ENST00000003302 F5P12259 2224 aa10.28□□□□□ -0.76
USP28-201ENST00000003302 HTR3EA5X5Y0 456 aa10.28□□□□□ -0.76
USP28-201ENST00000003302 FFAR1O14842 300 aa10.28□□□□□ -0.76
USP28-201ENST00000003302 SOX3P41225 446 aa10.28□□□□□ -0.76
USP28-201ENST00000003302 RPS13P62277 151 aaKnown RBP10.28□□□□□ -0.76
USP28-201ENST00000003302 EXOC3L2Q2M3D2 409 aa10.28□□□□□ -0.76
USP28-201ENST00000003302 HIPK1Q86Z02 1210 aa10.28□□□□□ -0.76
USP28-201ENST00000003302 SLC44A2Q8IWA5 706 aaPredicted RBP10.28□□□□□ -0.76
USP28-201ENST00000003302 DCAF4L2Q8NA75 395 aa10.28□□□□□ -0.76
USP28-201ENST00000003302 OR2AP1Q8NGE2 309 aa10.28□□□□□ -0.76
USP28-201ENST00000003302 LZICQ8WZA0 190 aa10.28□□□□□ -0.76
USP28-201ENST00000003302 ZNF566Q969W8 418 aa10.28□□□□□ -0.76
USP28-201ENST00000003302 PLD4Q96BZ4 506 aa10.28□□□□□ -0.76
USP28-201ENST00000003302 ZHX1-C8orf76Q96EF9 292 aa10.28□□□□□ -0.76
USP28-201ENST00000003302 IGSF21Q96ID5 467 aa10.28□□□□□ -0.76
USP28-201ENST00000003302 FAM210AQ96ND0 272 aa10.28□□□□□ -0.76
USP28-201ENST00000003302 KCNS3Q9BQ31 491 aa10.28□□□□□ -0.76
USP28-201ENST00000003302 CTPS2Q9NRF8 586 aa10.28□□□□□ -0.76
USP28-201ENST00000003302 KIF17Q9P2E2 1029 aa10.28□□□□□ -0.76
USP28-201ENST00000003302 LRFN2Q9ULH4 789 aa10.28□□□□□ -0.76
USP28-201ENST00000003302 VPS9D1Q9Y2B5 631 aa10.28□□□□□ -0.76
USP28-201ENST00000003302 PABPN1LA6NDY0 278 aaKnown RBP10.28□□□□□ -0.76
USP28-201ENST00000003302 CA12O43570 354 aa10.28□□□□□ -0.76
USP28-201ENST00000003302 ABLIM3O94929 683 aa10.28□□□□□ -0.76
USP28-201ENST00000003302 KRT6AP02538 564 aa10.28□□□□□ -0.76
USP28-201ENST00000003302 KRT6BP04259 564 aa10.28□□□□□ -0.76
USP28-201ENST00000003302 ADORA3P0DMS8 318 aa10.28□□□□□ -0.76
USP28-201ENST00000003302 CRATP43155 626 aa10.28□□□□□ -0.76
USP28-201ENST00000003302 KRT6CP48668 564 aa10.28□□□□□ -0.76
USP28-201ENST00000003302 IRF8Q02556 426 aa10.28□□□□□ -0.76
USP28-201ENST00000003302 SLC5A12Q1EHB4 618 aa10.28□□□□□ -0.76
USP28-201ENST00000003302 FAHD1Q6P587 224 aa10.28□□□□□ -0.76
USP28-201ENST00000003302 UBE2J2Q8N2K1 259 aa10.28□□□□□ -0.76
USP28-201ENST00000003302 SYNPOQ8N3V7 929 aa10.28□□□□□ -0.76
USP28-201ENST00000003302 BMPERQ8N8U9 685 aa10.28□□□□□ -0.76
USP28-201ENST00000003302 MCFD2Q8NI22 146 aa10.28□□□□□ -0.76
USP28-201ENST00000003302 ARSGQ96EG1 525 aa10.28□□□□□ -0.76
USP28-201ENST00000003302 SCRN2Q96FV2 425 aa10.28□□□□□ -0.76
USP28-201ENST00000003302 PHOX2BQ99453 314 aa10.28□□□□□ -0.76
USP28-201ENST00000003302 SLC12A9Q9BXP2 914 aa10.28□□□□□ -0.76
USP28-201ENST00000003302 SLAMF7Q9NQ25 335 aa10.28□□□□□ -0.76
USP28-201ENST00000003302 GRXCR2A6NFK2 248 aa10.28□□□□□ -0.76
USP28-201ENST00000003302 PSMD11O00231 422 aa10.28□□□□□ -0.76
USP28-201ENST00000003302 TPST2O60704 377 aa10.28□□□□□ -0.76
USP28-201ENST00000003302 B4GALT2O60909 372 aa10.28□□□□□ -0.76
USP28-201ENST00000003302 C6orf47O95873 294 aa10.28□□□□□ -0.76
USP28-201ENST00000003302 NSG1P42857 185 aa10.28□□□□□ -0.76
USP28-201ENST00000003302 DEFB103AP81534 67 aa10.28□□□□□ -0.76
USP28-201ENST00000003302 DUOXA1Q1HG43 343 aa10.28□□□□□ -0.76
USP28-201ENST00000003302 HEATR4Q86WZ0 1026 aa10.28□□□□□ -0.76
USP28-201ENST00000003302 NPAS4Q8IUM7 802 aa10.28□□□□□ -0.76
USP28-201ENST00000003302 GLB1L3Q8NCI6 653 aaPredicted RBP10.28□□□□□ -0.76
USP28-201ENST00000003302 TESCQ96BS2 214 aa10.28□□□□□ -0.76
USP28-201ENST00000003302 VMP1Q96GC9 406 aa10.28□□□□□ -0.76
USP28-201ENST00000003302 OGDHLQ9ULD0 1010 aa10.28□□□□□ -0.76
USP28-201ENST00000003302 PABPC1P11940 636 aaKnown RBP10.28□□□□□ -0.76
USP28-201ENST00000003302 ZNF8P17098 575 aaPredicted RBP10.28□□□□□ -0.76
USP28-201ENST00000003302 AZGP1P25311 298 aaKnown RBP10.28□□□□□ -0.76
USP28-201ENST00000003302 DNAJA1P31689 397 aaKnown RBP10.28□□□□□ -0.76
USP28-201ENST00000003302 RGNQ15493 299 aa10.28□□□□□ -0.76
USP28-201ENST00000003302 FAM20CQ8IXL6 584 aa10.28□□□□□ -0.76
USP28-201ENST00000003302 RASGEF1AQ8N9B8 481 aa10.28□□□□□ -0.76
USP28-201ENST00000003302 RHOXF1Q8NHV9 184 aa10.28□□□□□ -0.76
USP28-201ENST00000003302 NFKBIDQ8NI38 313 aa10.28□□□□□ -0.76
USP28-201ENST00000003302 UBTD2Q8WUN7 234 aa10.28□□□□□ -0.76
USP28-201ENST00000003302 ZNF229Q9UJW7 825 aa10.28□□□□□ -0.76
USP28-201ENST00000003302 YARS2Q9Y2Z4 477 aaKnown RBP10.28□□□□□ -0.76
USP28-201ENST00000003302 A0A1W2PS29 197 aa10.27□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 76 ms