RNA–Protein interactions for RNA: ENST00000642137.1

LINC00339-213, long intergenic non-protein coding RNA 339, humanhuman

BASIC

Gene LINC00339, Length 222 nt, Biotype transcribed processed pseudogene, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-213ENST00000642137 NT5CQ8TCD5 201 aa11.77□□□□□ -0.53
LINC00339-213ENST00000642137 CREB3L4Q8TEY5 395 aa11.77□□□□□ -0.53
LINC00339-213ENST00000642137 SLC13A3Q8WWT9 602 aa11.77□□□□□ -0.53
LINC00339-213ENST00000642137 N4BP2L2Q92802 583 aaPredicted RBP11.77□□□□□ -0.53
LINC00339-213ENST00000642137 RERGQ96A58 199 aaPredicted RBP11.77□□□□□ -0.53
LINC00339-213ENST00000642137 ZNF501Q96CX3 271 aaPredicted RBP11.77□□□□□ -0.53
LINC00339-213ENST00000642137 MTFMTQ96DP5 389 aaKnown RBP11.77□□□□□ -0.53
LINC00339-213ENST00000642137 FCRL4Q96PJ5 515 aa11.77□□□□□ -0.53
LINC00339-213ENST00000642137 KCNA7Q96RP8 456 aa11.77□□□□□ -0.53
LINC00339-213ENST00000642137 CCT7Q99832 543 aa11.77□□□□□ -0.53
LINC00339-213ENST00000642137 BRF2Q9HAW0 419 aa11.77□□□□□ -0.53
LINC00339-213ENST00000642137 FANCEQ9HB96 536 aa11.77□□□□□ -0.53
LINC00339-213ENST00000642137 SLCO1B3Q9NPD5 702 aa11.77□□□□□ -0.53
LINC00339-213ENST00000642137 PFDN4Q9NQP4 134 aa11.77□□□□□ -0.53
LINC00339-213ENST00000642137 FBXO8Q9NRD0 319 aa11.77□□□□□ -0.53
LINC00339-213ENST00000642137 VTI1BQ9UEU0 232 aa11.77□□□□□ -0.53
LINC00339-213ENST00000642137 DNAJC15Q9Y5T4 150 aa11.77□□□□□ -0.53
LINC00339-213ENST00000642137 CCDC187A0A096LP49 1063 aa11.76□□□□□ -0.53
LINC00339-213ENST00000642137 EFCAB7A8K855 629 aa11.76□□□□□ -0.53
LINC00339-213ENST00000642137 B4E171 279 aa11.76□□□□□ -0.53
LINC00339-213ENST00000642137 ZSCAN9O15535 394 aaPredicted RBP11.76□□□□□ -0.53
LINC00339-213ENST00000642137 TGDSO95455 350 aa11.76□□□□□ -0.53
LINC00339-213ENST00000642137 PTX3P26022 381 aaPredicted RBP11.76□□□□□ -0.53
LINC00339-213ENST00000642137 TSPAN7P41732 249 aa11.76□□□□□ -0.53
LINC00339-213ENST00000642137 NEK2P51955 445 aa11.76□□□□□ -0.53
LINC00339-213ENST00000642137 EMP3P54852 163 aa11.76□□□□□ -0.53
LINC00339-213ENST00000642137 RGS1Q08116 209 aa11.76□□□□□ -0.53
LINC00339-213ENST00000642137 CYP4F3Q08477 520 aa11.76□□□□□ -0.53
LINC00339-213ENST00000642137 IL11RAQ14626 422 aa11.76□□□□□ -0.53
LINC00339-213ENST00000642137 KCNAB1Q14722 419 aa11.76□□□□□ -0.53
LINC00339-213ENST00000642137 ABRAXAS2Q15018 415 aa11.76□□□□□ -0.53
LINC00339-213ENST00000642137 GPR19Q15760 415 aa11.76□□□□□ -0.53
LINC00339-213ENST00000642137 WASHC2DQ5SRD0 308 aa11.76□□□□□ -0.53
LINC00339-213ENST00000642137 TMPRSS7Q7RTY8 843 aa11.76□□□□□ -0.53
LINC00339-213ENST00000642137 TRIM46Q7Z4K8 759 aa11.76□□□□□ -0.53
LINC00339-213ENST00000642137 VN1R5Q7Z5H4 357 aa11.76□□□□□ -0.53
LINC00339-213ENST00000642137 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP11.76□□□□□ -0.53
LINC00339-213ENST00000642137 BMPERQ8N8U9 685 aa11.76□□□□□ -0.53
LINC00339-213ENST00000642137 GBP7Q8N8V2 638 aaPredicted RBP11.76□□□□□ -0.53
LINC00339-213ENST00000642137 CMTM7Q96FZ5 175 aa11.76□□□□□ -0.53
LINC00339-213ENST00000642137 PRR11Q96HE9 360 aaPredicted RBP11.76□□□□□ -0.53
LINC00339-213ENST00000642137 ZNF317Q96PQ6 595 aaPredicted RBP11.76□□□□□ -0.53
LINC00339-213ENST00000642137 MTERF1Q99551 399 aaKnown RBP11.76□□□□□ -0.53
LINC00339-213ENST00000642137 NLNQ9BYT8 704 aa11.76□□□□□ -0.53
LINC00339-213ENST00000642137 SYNPO2LQ9H987 977 aa11.76□□□□□ -0.53
LINC00339-213ENST00000642137 FGF21Q9NSA1 209 aa11.76□□□□□ -0.53
LINC00339-213ENST00000642137 FARSBQ9NSD9 589 aaKnown RBP11.76□□□□□ -0.53
LINC00339-213ENST00000642137 NMRK1Q9NWW6 199 aa11.76□□□□□ -0.53
LINC00339-213ENST00000642137 OCIAD1Q9NX40 245 aa11.76□□□□□ -0.53
LINC00339-213ENST00000642137 SIDT1Q9NXL6 827 aaKnown RBP11.76□□□□□ -0.53
LINC00339-213ENST00000642137 ADAM21Q9UKJ8 722 aa11.76□□□□□ -0.53
LINC00339-213ENST00000642137 FIS1Q9Y3D6 152 aa11.76□□□□□ -0.53
LINC00339-213ENST00000642137 ZNF292O60281 2723 aa11.75□□□□□ -0.53
LINC00339-213ENST00000642137 GVINP1Q7Z2Y8 2422 aa11.75□□□□□ -0.53
LINC00339-213ENST00000642137 FITM1A5D6W6 292 aa11.75□□□□□ -0.53
LINC00339-213ENST00000642137 LRIT2A6NDA9 550 aa11.75□□□□□ -0.53
LINC00339-213ENST00000642137 URADA6NGE7 173 aa11.75□□□□□ -0.53
LINC00339-213ENST00000642137 MAGEB17A8MXT2 336 aa11.75□□□□□ -0.53
LINC00339-213ENST00000642137 TMEM233B4DJY2 109 aa11.75□□□□□ -0.53
LINC00339-213ENST00000642137 TMEM150CB9EJG8 249 aa11.75□□□□□ -0.53
LINC00339-213ENST00000642137 H3BMH7 237 aa11.75□□□□□ -0.53
LINC00339-213ENST00000642137 SLC28A1O00337 649 aa11.75□□□□□ -0.53
LINC00339-213ENST00000642137 HDAC3O15379 428 aa11.75□□□□□ -0.53
LINC00339-213ENST00000642137 TBX6O95947 436 aaPredicted RBP11.75□□□□□ -0.53
LINC00339-213ENST00000642137 TGFB1P01137 390 aa11.75□□□□□ -0.53
LINC00339-213ENST00000642137 VIMP08670 466 aaKnown RBP11.75□□□□□ -0.53
LINC00339-213ENST00000642137 SLC35G6P0C7Q6 338 aa11.75□□□□□ -0.53
LINC00339-213ENST00000642137 KITP10721 976 aa11.75□□□□□ -0.53
LINC00339-213ENST00000642137 FGF5P12034 268 aa11.75□□□□□ -0.53
LINC00339-213ENST00000642137 LSP1P33241 339 aa11.75□□□□□ -0.53
LINC00339-213ENST00000642137 ARFIP1P53367 373 aa11.75□□□□□ -0.53
LINC00339-213ENST00000642137 VSX2P58304 361 aaPredicted RBP11.75□□□□□ -0.53
LINC00339-213ENST00000642137 RPS13P62277 151 aaKnown RBP11.75□□□□□ -0.53
LINC00339-213ENST00000642137 GNGT1P63211 74 aa11.75□□□□□ -0.53
LINC00339-213ENST00000642137 HYAL2Q12891 473 aa11.75□□□□□ -0.53
LINC00339-213ENST00000642137 CSTF3Q12996 717 aaKnown RBP11.75□□□□□ -0.53
LINC00339-213ENST00000642137 TARDBPQ13148 414 aaKnown RBP eCLIP11.75□□□□□ -0.53
LINC00339-213ENST00000642137 TUBB3Q13509 450 aa11.75□□□□□ -0.53
LINC00339-213ENST00000642137 CUL3Q13618 768 aa11.75□□□□□ -0.53
LINC00339-213ENST00000642137 PRTGQ2VWP7 1150 aa11.75□□□□□ -0.53
LINC00339-213ENST00000642137 DEFB110Q30KQ9 67 aa11.75□□□□□ -0.53
LINC00339-213ENST00000642137 FAM214AQ32MH5 1076 aa11.75□□□□□ -0.53
LINC00339-213ENST00000642137 ADPRMQ3LIE5 342 aa11.75□□□□□ -0.53
LINC00339-213ENST00000642137 SGO1Q5FBB7 561 aa11.75□□□□□ -0.53
LINC00339-213ENST00000642137 TCHHL1Q5QJ38 904 aaPredicted RBP11.75□□□□□ -0.53
LINC00339-213ENST00000642137 DEPDC1Q5TB30 811 aa11.75□□□□□ -0.53
LINC00339-213ENST00000642137 YOD1Q5VVQ6 348 aaPredicted RBP11.75□□□□□ -0.53
LINC00339-213ENST00000642137 TLDC1Q6P9B6 456 aa11.75□□□□□ -0.53
LINC00339-213ENST00000642137 FAM47EQ6ZV65 393 aa11.75□□□□□ -0.53
LINC00339-213ENST00000642137 CHSY3Q70JA7 882 aa11.75□□□□□ -0.53
LINC00339-213ENST00000642137 RAB11FIP2Q7L804 512 aa11.75□□□□□ -0.53
LINC00339-213ENST00000642137 WDR75Q8IWA0 830 aaKnown RBP11.75□□□□□ -0.53
LINC00339-213ENST00000642137 LRRC34Q8IZ02 419 aa11.75□□□□□ -0.53
LINC00339-213ENST00000642137 GPR135Q8IZ08 494 aa11.75□□□□□ -0.53
LINC00339-213ENST00000642137 OR1L3Q8NH93 324 aa11.75□□□□□ -0.53
LINC00339-213ENST00000642137 WDR36Q8NI36 951 aaKnown RBP11.75□□□□□ -0.53
LINC00339-213ENST00000642137 AGR3Q8TD06 166 aa11.75□□□□□ -0.53
LINC00339-213ENST00000642137 TWIST2Q8WVJ9 160 aa11.75□□□□□ -0.53
LINC00339-213ENST00000642137 CCT6BQ92526 530 aa11.75□□□□□ -0.53
LINC00339-213ENST00000642137 CHMP6Q96FZ7 201 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms