RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 CKLFQ9UBR5 152 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 NPIPA1Q9UND3 350 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 PCM1Q15154 2024 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 DVL2O14641 736 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 LINC01565O15544 149 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 TPMTP51580 245 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 CHN2P52757 468 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 NME5P56597 212 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 NFKB2Q00653 900 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 KCTD21Q4G0X4 260 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 FIGNQ5HY92 759 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 SLC25A25Q6KCM7 469 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 GPAT4Q86UL3 456 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 CEP97Q8IW35 865 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 ARL10Q8N8L6 244 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 GPBAR1Q8TDU6 330 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 FNIP1Q8TF40 1166 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 SLC25A36Q96CQ1 311 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 CCT8L2Q96SF2 557 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 ADAM33Q9BZ11 813 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 LRRN3Q9H3W5 708 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 R3HDM2Q9Y2K5 976 aaKnown RBP4.86□□□□□ -1.63
SCN1A-218ENST00000640036 PSAT1Q9Y617 370 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 GALR2O43603 387 aaPredicted RBP4.86□□□□□ -1.63
SCN1A-218ENST00000640036 MTX2O75431 263 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 MTHFD1P11586 935 aaKnown RBP4.86□□□□□ -1.63
SCN1A-218ENST00000640036 MAN2A2P49641 1150 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 ALDH3A2P51648 485 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 RAB10P61026 200 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 PDK4Q16654 411 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 HLA-BQ31612 363 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 TYW3Q6IPR3 259 aaKnown RBP4.86□□□□□ -1.63
SCN1A-218ENST00000640036 SLC39A4Q6P5W5 647 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 HFE2Q6ZVN8 426 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 S100A7AQ86SG5 101 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 SLC41A1Q8IVJ1 513 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 MREGQ8N565 214 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 TEX29Q8N6K0 151 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 PDPRQ8NCN5 879 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 OR4K14Q8NGD5 310 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 TWNKQ96RR1 684 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 TXN2Q99757 166 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 KCNJ16Q9NPI9 418 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 RASSF1Q9NS23 344 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 ZNF226Q9NYT6 803 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 MBD1Q9UIS9 605 aaPredicted RBP4.86□□□□□ -1.63
SCN1A-218ENST00000640036 ADAM18Q9Y3Q7 739 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 SNRNP200O75643 2136 aaKnown RBP4.86□□□□□ -1.63
SCN1A-218ENST00000640036 RFXANKO14593 260 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 PPEF2O14830 753 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 RFPL1O75677 317 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 RENP00797 406 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 PTHP01270 115 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 COL6A2P12110 1019 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 MECP2P51608 486 aaKnown RBP4.86□□□□□ -1.63
SCN1A-218ENST00000640036 ATXN1P54253 815 aaKnown RBP4.86□□□□□ -1.63
SCN1A-218ENST00000640036 EML3Q32P44 896 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 TMIGD1Q6UXZ0 262 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 EXD3Q8N9H8 876 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 C15orf40Q8WUR7 153 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 EME1Q96AY2 570 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 SARAFQ96BY9 339 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 C1orf74Q96LT6 269 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 LENG8Q96PV6 779 aaPredicted RBP4.86□□□□□ -1.63
SCN1A-218ENST00000640036 TAAR9Q96RI9 348 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 ZNF71Q9NQZ8 489 aaPredicted RBP4.86□□□□□ -1.63
SCN1A-218ENST00000640036 RPS6KA6Q9UK32 745 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 NDUFAF1Q9Y375 327 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 A0A1W2PPW3 197 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 OR5K3A6NET4 321 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 UBDO15205 165 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 C8orf89P0DMQ9 161 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 OR2B6P58173 313 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 DPYSL3Q14195 570 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 ZNF572Q7Z3I7 529 aaPredicted RBP4.86□□□□□ -1.63
SCN1A-218ENST00000640036 PTERQ96BW5 349 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 DGCR14Q96DF8 476 aaKnown RBP4.86□□□□□ -1.63
SCN1A-218ENST00000640036 MRPL57Q9BQC6 102 aaKnown RBP4.86□□□□□ -1.63
SCN1A-218ENST00000640036 RAB9BQ9NP90 201 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 CCDC59Q9P031 241 aaKnown RBP4.86□□□□□ -1.63
SCN1A-218ENST00000640036 XPR1Q9UBH6 696 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 SNX12Q9UMY4 172 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 SLC22A14Q9Y267 594 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 V9GYQ6 96 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 A0A0J9YY10 115 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 CDC123O75794 336 aaPredicted RBP4.86□□□□□ -1.63
SCN1A-218ENST00000640036 CLIC3O95833 236 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 CXCL10P02778 98 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 ANXA4P09525 319 aaPredicted RBP4.86□□□□□ -1.63
SCN1A-218ENST00000640036 S100A12P80511 92 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 HSPB3Q12988 150 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 MALLQ13021 153 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 SLBPQ14493 270 aaKnown RBP eCLIP4.86□□□□□ -1.63
SCN1A-218ENST00000640036 AGKQ53H12 422 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 LRIF1Q5T3J3 769 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 HES3Q5TGS1 186 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 RBP7Q96R05 134 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 GPR21Q99679 349 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 NPAS2Q99743 824 aa4.86□□□□□ -1.63
SCN1A-218ENST00000640036 ABCB10Q9NRK6 738 aa4.86□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms