RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 TMEM214Q6NUQ4 689 aaKnown RBP18.26■□□□□ 0.51
CLN3-260ENST00000637578 RBMXL3Q8N7X1 1067 aaKnown RBP18.26■□□□□ 0.51
CLN3-260ENST00000637578 ALKBH8Q96BT7 664 aaKnown RBP18.26■□□□□ 0.51
CLN3-260ENST00000637578 MMABQ96EY8 250 aaPredicted RBP18.26■□□□□ 0.51
CLN3-260ENST00000637578 CRB3Q9BUF7 120 aa18.26■□□□□ 0.51
CLN3-260ENST00000637578 GPAMQ9HCL2 828 aa18.26■□□□□ 0.51
CLN3-260ENST00000637578 MKKSQ9NPJ1 570 aaPredicted RBP18.26■□□□□ 0.51
CLN3-260ENST00000637578 C14orf105Q9NVL8 296 aa18.26■□□□□ 0.51
CLN3-260ENST00000637578 TRPC4Q9UBN4 977 aa18.26■□□□□ 0.51
CLN3-260ENST00000637578 OARD1Q9Y530 152 aa18.26■□□□□ 0.51
CLN3-260ENST00000637578 UBR5O95071 2799 aaPredicted RBP18.26■□□□□ 0.51
CLN3-260ENST00000637578 A0A1W2PQ72 361 aa18.25■□□□□ 0.51
CLN3-260ENST00000637578 FEZF1A0PJY2 475 aa18.25■□□□□ 0.51
CLN3-260ENST00000637578 H0YIG0 161 aa18.25■□□□□ 0.51
CLN3-260ENST00000637578 CTIFO43310 598 aaKnown RBP18.25■□□□□ 0.51
CLN3-260ENST00000637578 SORBS2O94875 1100 aaKnown RBP18.25■□□□□ 0.51
CLN3-260ENST00000637578 NSA2O95478 260 aaKnown RBP18.25■□□□□ 0.51
CLN3-260ENST00000637578 CCR8P51685 355 aa18.25■□□□□ 0.51
CLN3-260ENST00000637578 SLC12A2P55011 1212 aa18.25■□□□□ 0.51
CLN3-260ENST00000637578 RAPSNQ13702 412 aa18.25■□□□□ 0.51
CLN3-260ENST00000637578 ZKSCAN8Q15776 578 aaPredicted RBP18.25■□□□□ 0.51
CLN3-260ENST00000637578 RBBP7Q16576 425 aa18.25■□□□□ 0.51
CLN3-260ENST00000637578 MFSD9Q8NBP5 474 aa18.25■□□□□ 0.51
CLN3-260ENST00000637578 CAMKVQ8NCB2 501 aa18.25■□□□□ 0.51
CLN3-260ENST00000637578 MIB2Q96AX9 1013 aa18.25■□□□□ 0.51
CLN3-260ENST00000637578 TSPAN17Q96FV3 270 aa18.25■□□□□ 0.51
CLN3-260ENST00000637578 MESP1Q9BRJ9 268 aa18.25■□□□□ 0.51
CLN3-260ENST00000637578 DERL2Q9GZP9 239 aa18.25■□□□□ 0.51
CLN3-260ENST00000637578 ZNF180Q9UJW8 692 aa18.25■□□□□ 0.51
CLN3-260ENST00000637578 C3orf18Q9UK00 162 aa18.25■□□□□ 0.51
CLN3-260ENST00000637578 NPEPPSL1A6NEC2 478 aa18.25■□□□□ 0.51
CLN3-260ENST00000637578 PHGDHO43175 533 aaKnown RBP18.25■□□□□ 0.51
CLN3-260ENST00000637578 ZIC2O95409 532 aaPredicted RBP18.25■□□□□ 0.51
CLN3-260ENST00000637578 ANXA5P08758 320 aa18.25■□□□□ 0.51
CLN3-260ENST00000637578 GRK3P35626 688 aa18.25■□□□□ 0.51
CLN3-260ENST00000637578 CD97P48960 835 aa18.25■□□□□ 0.51
CLN3-260ENST00000637578 IGFBP7Q16270 282 aa18.25■□□□□ 0.51
CLN3-260ENST00000637578 TUBB8Q3ZCM7 444 aa18.25■□□□□ 0.51
CLN3-260ENST00000637578 JMJD6Q6NYC1 403 aaPredicted RBP18.25■□□□□ 0.51
CLN3-260ENST00000637578 CMC1Q7Z7K0 106 aa18.25■□□□□ 0.51
CLN3-260ENST00000637578 ADAMTSL2Q86TH1 951 aa18.25■□□□□ 0.51
CLN3-260ENST00000637578 MREGQ8N565 214 aa18.25■□□□□ 0.51
CLN3-260ENST00000637578 NEIL2Q969S2 332 aa18.25■□□□□ 0.51
CLN3-260ENST00000637578 VPS50Q96JG6 964 aa18.25■□□□□ 0.51
CLN3-260ENST00000637578 MACROD1Q9BQ69 325 aa18.25■□□□□ 0.51
CLN3-260ENST00000637578 MYO18BQ8IUG5 2567 aa18.25■□□□□ 0.51
CLN3-260ENST00000637578 TRBC2A0A5B9 178 aa18.24■□□□□ 0.51
CLN3-260ENST00000637578 IDSB3KWA1 339 aa18.24■□□□□ 0.51
CLN3-260ENST00000637578 STATHP02808 62 aa18.24■□□□□ 0.51
CLN3-260ENST00000637578 STMN1P16949 149 aa18.24■□□□□ 0.51
CLN3-260ENST00000637578 AVPR1BP47901 424 aa18.24■□□□□ 0.51
CLN3-260ENST00000637578 HNMTP50135 292 aa18.24■□□□□ 0.51
CLN3-260ENST00000637578 SERPINB9P50453 376 aa18.24■□□□□ 0.51
CLN3-260ENST00000637578 MLLT10P55197 1068 aa18.24■□□□□ 0.51
CLN3-260ENST00000637578 TSNQ15631 228 aaKnown RBP18.24■□□□□ 0.51
CLN3-260ENST00000637578 CATSPEREQ5SY80 951 aa18.24■□□□□ 0.51
CLN3-260ENST00000637578 ASPGQ86U10 573 aa18.24■□□□□ 0.51
CLN3-260ENST00000637578 ZC3H7AQ8IWR0 971 aaKnown RBP18.24■□□□□ 0.51
CLN3-260ENST00000637578 KLHDC8AQ8IYD2 350 aa18.24■□□□□ 0.51
CLN3-260ENST00000637578 MYRIPQ8NFW9 859 aa18.24■□□□□ 0.51
CLN3-260ENST00000637578 OR9A4Q8NGU2 314 aa18.24■□□□□ 0.51
CLN3-260ENST00000637578 SLC13A3Q8WWT9 602 aa18.24■□□□□ 0.51
CLN3-260ENST00000637578 UBXN10Q96LJ8 280 aa18.24■□□□□ 0.51
CLN3-260ENST00000637578 CCDC77Q9BR77 488 aa18.24■□□□□ 0.51
CLN3-260ENST00000637578 CTNNAL1Q9UBT7 734 aa18.24■□□□□ 0.51
CLN3-260ENST00000637578 FETUBQ9UGM5 382 aa18.24■□□□□ 0.51
CLN3-260ENST00000637578 SLC22A7Q9Y694 548 aa18.24■□□□□ 0.51
CLN3-260ENST00000637578 NUP210LQ5VU65 1888 aa18.24■□□□□ 0.51
CLN3-260ENST00000637578 NBASA2RRP1 2371 aa18.24■□□□□ 0.51
CLN3-260ENST00000637578 FFAR3O14843 346 aa18.23■□□□□ 0.51
CLN3-260ENST00000637578 PCDH17O14917 1159 aa18.23■□□□□ 0.51
CLN3-260ENST00000637578 GPR42O15529 346 aa18.23■□□□□ 0.51
CLN3-260ENST00000637578 IPO13O94829 963 aaKnown RBP18.23■□□□□ 0.51
CLN3-260ENST00000637578 ALPPP05187 535 aa18.23■□□□□ 0.51
CLN3-260ENST00000637578 EMP2P54851 167 aa18.23■□□□□ 0.51
CLN3-260ENST00000637578 RAB10P61026 200 aa18.23■□□□□ 0.51
CLN3-260ENST00000637578 Q0VFX4 171 aa18.23■□□□□ 0.51
CLN3-260ENST00000637578 SYT16Q17RD7 645 aa18.23■□□□□ 0.51
CLN3-260ENST00000637578 TAOK1Q7L7X3 1001 aa18.23■□□□□ 0.51
CLN3-260ENST00000637578 PRSS41Q7RTY9 318 aa18.23■□□□□ 0.51
CLN3-260ENST00000637578 THOC6Q86W42 341 aaKnown RBP18.23■□□□□ 0.51
CLN3-260ENST00000637578 PRSS58Q8IYP2 241 aa18.23■□□□□ 0.51
CLN3-260ENST00000637578 Q8NA96 180 aa18.23■□□□□ 0.51
CLN3-260ENST00000637578 KCT2Q8NC54 265 aa18.23■□□□□ 0.51
CLN3-260ENST00000637578 OR2W6PQ8NHA6 318 aa18.23■□□□□ 0.51
CLN3-260ENST00000637578 SLC5A11Q8WWX8 675 aa18.23■□□□□ 0.51
CLN3-260ENST00000637578 PNPLA2Q96AD5 504 aa18.23■□□□□ 0.51
CLN3-260ENST00000637578 RHBDF1Q96CC6 855 aa18.23■□□□□ 0.51
CLN3-260ENST00000637578 SLC22A14Q9Y267 594 aa18.23■□□□□ 0.51
CLN3-260ENST00000637578 CCDC151A5D8V7 595 aa18.22■□□□□ 0.51
CLN3-260ENST00000637578 ALOX12BO75342 701 aa18.22■□□□□ 0.51
CLN3-260ENST00000637578 ERLIN1O75477 346 aa18.22■□□□□ 0.51
CLN3-260ENST00000637578 KRT38O76015 456 aa18.22■□□□□ 0.51
CLN3-260ENST00000637578 BMP10O95393 424 aa18.22■□□□□ 0.51
CLN3-260ENST00000637578 HPP00738 406 aa18.22■□□□□ 0.51
CLN3-260ENST00000637578 ALDOAP04075 364 aaKnown RBP18.22■□□□□ 0.51
CLN3-260ENST00000637578 NUDT17P0C025 328 aa18.22■□□□□ 0.51
CLN3-260ENST00000637578 ACPPP15309 386 aa18.22■□□□□ 0.51
CLN3-260ENST00000637578 GMPRP36959 345 aa18.22■□□□□ 0.51
CLN3-260ENST00000637578 SLC6A12P48065 614 aa18.22■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms