RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 KRT16P08779 473 aa17.63■□□□□ 0.41
CLN3-254ENST00000637050 HOXB3P14651 431 aaPredicted RBP17.63■□□□□ 0.41
CLN3-254ENST00000637050 MAGP20916 626 aa17.63■□□□□ 0.41
CLN3-254ENST00000637050 EPHA8P29322 1005 aaPredicted RBP17.63■□□□□ 0.41
CLN3-254ENST00000637050 ZIC1Q15915 447 aa17.63■□□□□ 0.41
CLN3-254ENST00000637050 HLA-BQ31612 363 aa17.63■□□□□ 0.41
CLN3-254ENST00000637050 MMEL1Q495T6 779 aa17.63■□□□□ 0.41
CLN3-254ENST00000637050 VPS26BQ4G0F5 336 aa17.63■□□□□ 0.41
CLN3-254ENST00000637050 COQ5Q5HYK3 327 aa17.63■□□□□ 0.41
CLN3-254ENST00000637050 KLHL35Q6PF15 583 aa17.63■□□□□ 0.41
CLN3-254ENST00000637050 COMMD6Q7Z4G1 85 aa17.63■□□□□ 0.41
CLN3-254ENST00000637050 MFSD9Q8NBP5 474 aa17.63■□□□□ 0.41
CLN3-254ENST00000637050 GLB1L3Q8NCI6 653 aaPredicted RBP17.63■□□□□ 0.41
CLN3-254ENST00000637050 ZUFSPQ96AP4 578 aa17.63■□□□□ 0.41
CLN3-254ENST00000637050 TMEM74Q96NL1 305 aa17.63■□□□□ 0.41
CLN3-254ENST00000637050 SLC38A3Q99624 504 aa17.63■□□□□ 0.41
CLN3-254ENST00000637050 EBPLQ9BY08 206 aa17.63■□□□□ 0.41
CLN3-254ENST00000637050 CAPN10Q9HC96 672 aa17.63■□□□□ 0.41
CLN3-254ENST00000637050 EVA1BQ9NVM1 165 aa17.63■□□□□ 0.41
CLN3-254ENST00000637050 POMT2Q9UKY4 750 aa17.63■□□□□ 0.41
CLN3-254ENST00000637050 NDUFAF1Q9Y375 327 aa17.63■□□□□ 0.41
CLN3-254ENST00000637050 PCDHGA4Q9Y5G9 962 aa17.63■□□□□ 0.41
CLN3-254ENST00000637050 A0A0J9YY10 115 aa17.62■□□□□ 0.41
CLN3-254ENST00000637050 A0A1W2PP18 115 aa17.62■□□□□ 0.41
CLN3-254ENST00000637050 DFNA5O60443 496 aa17.62■□□□□ 0.41
CLN3-254ENST00000637050 CFIP05156 583 aa17.62■□□□□ 0.41
CLN3-254ENST00000637050 TYRP1P17643 537 aa17.62■□□□□ 0.41
CLN3-254ENST00000637050 TIA1P31483 386 aaKnown RBP eCLIP17.62■□□□□ 0.41
CLN3-254ENST00000637050 LSSP48449 732 aa17.62■□□□□ 0.41
CLN3-254ENST00000637050 RELAQ04206 551 aa17.62■□□□□ 0.41
CLN3-254ENST00000637050 BIRC2Q13490 618 aa17.62■□□□□ 0.41
CLN3-254ENST00000637050 FCRL6Q6DN72 434 aa17.62■□□□□ 0.41
CLN3-254ENST00000637050 ARMC6Q6NXE6 501 aa17.62■□□□□ 0.41
CLN3-254ENST00000637050 FIGLAQ6QHK4 219 aa17.62■□□□□ 0.41
CLN3-254ENST00000637050 RETREG3Q86VR2 466 aa17.62■□□□□ 0.41
CLN3-254ENST00000637050 DSELQ8IZU8 1212 aa17.62■□□□□ 0.41
CLN3-254ENST00000637050 ARL10Q8N8L6 244 aa17.62■□□□□ 0.41
CLN3-254ENST00000637050 CLHC1Q8NHS4 586 aa17.62■□□□□ 0.41
CLN3-254ENST00000637050 EGLN2Q96KS0 407 aa17.62■□□□□ 0.41
CLN3-254ENST00000637050 TSSK3Q96PN8 268 aa17.62■□□□□ 0.41
CLN3-254ENST00000637050 RAB3IPQ96QF0 476 aaPredicted RBP17.62■□□□□ 0.41
CLN3-254ENST00000637050 ZBTB18Q99592 522 aa17.62■□□□□ 0.41
CLN3-254ENST00000637050 CLMPQ9H6B4 373 aa17.62■□□□□ 0.41
CLN3-254ENST00000637050 SNRNP200O75643 2136 aaKnown RBP17.62■□□□□ 0.41
CLN3-254ENST00000637050 ASPDHA6ND91 283 aa17.61■□□□□ 0.41
CLN3-254ENST00000637050 SAP18O00422 153 aaKnown RBP17.61■□□□□ 0.41
CLN3-254ENST00000637050 MRASO14807 208 aa17.61■□□□□ 0.41
CLN3-254ENST00000637050 ANGPT2O15123 496 aa17.61■□□□□ 0.41
CLN3-254ENST00000637050 ANXA4P09525 319 aaPredicted RBP17.61■□□□□ 0.41
CLN3-254ENST00000637050 CAPZBP47756 277 aa17.61■□□□□ 0.41
CLN3-254ENST00000637050 CLNS1AP54105 237 aaKnown RBP17.61■□□□□ 0.41
CLN3-254ENST00000637050 PPP1CAP62136 330 aa17.61■□□□□ 0.41
CLN3-254ENST00000637050 RPS15AP62244 130 aaKnown RBP17.61■□□□□ 0.41
CLN3-254ENST00000637050 ART3Q13508 389 aa17.61■□□□□ 0.41
CLN3-254ENST00000637050 FBXO42Q6P3S6 717 aa17.61■□□□□ 0.41
CLN3-254ENST00000637050 HACD2Q6Y1H2 254 aa17.61■□□□□ 0.41
CLN3-254ENST00000637050 ZNF438Q7Z4V0 828 aa17.61■□□□□ 0.41
CLN3-254ENST00000637050 RIMKLAQ8IXN7 391 aa17.61■□□□□ 0.41
CLN3-254ENST00000637050 SLC35F3Q8IY50 421 aa17.61■□□□□ 0.41
CLN3-254ENST00000637050 KRTCAP2Q8N6L1 136 aa17.61■□□□□ 0.41
CLN3-254ENST00000637050 TRPV3Q8NET8 790 aa17.61■□□□□ 0.41
CLN3-254ENST00000637050 MCUR1Q96AQ8 359 aa17.61■□□□□ 0.41
CLN3-254ENST00000637050 F2RL3Q96RI0 385 aa17.61■□□□□ 0.41
CLN3-254ENST00000637050 SYNPO2LQ9H987 977 aa17.61■□□□□ 0.41
CLN3-254ENST00000637050 FSCN3Q9NQT6 498 aa17.61■□□□□ 0.41
CLN3-254ENST00000637050 NDE1Q9NXR1 346 aa17.61■□□□□ 0.41
CLN3-254ENST00000637050 AHSPQ9NZD4 102 aa17.61■□□□□ 0.41
CLN3-254ENST00000637050 MAP10Q9P2G4 905 aa17.61■□□□□ 0.41
CLN3-254ENST00000637050 KMT2EQ8IZD2 1858 aa17.61■□□□□ 0.41
CLN3-254ENST00000637050 CCDC154A6NI56 674 aa17.61■□□□□ 0.41
CLN3-254ENST00000637050 PLPP1O14494 284 aa17.61■□□□□ 0.41
CLN3-254ENST00000637050 YKT6O15498 198 aa17.61■□□□□ 0.41
CLN3-254ENST00000637050 NUDT21O43809 227 aaKnown RBP17.61■□□□□ 0.41
CLN3-254ENST00000637050 PCDH7O60245 1069 aa17.61■□□□□ 0.41
CLN3-254ENST00000637050 PRMT3O60678 531 aa17.61■□□□□ 0.41
CLN3-254ENST00000637050 EEDO75530 441 aaKnown RBP17.61■□□□□ 0.41
CLN3-254ENST00000637050 PROS1P07225 676 aa17.61■□□□□ 0.41
CLN3-254ENST00000637050 EPHA4P54764 986 aa17.61■□□□□ 0.41
CLN3-254ENST00000637050 C21orf58P58505 322 aa17.61■□□□□ 0.41
CLN3-254ENST00000637050 TLR1Q15399 786 aa17.61■□□□□ 0.41
CLN3-254ENST00000637050 ADPRMQ3LIE5 342 aa17.61■□□□□ 0.41
CLN3-254ENST00000637050 SLC23A3Q6PIS1 610 aa17.61■□□□□ 0.41
CLN3-254ENST00000637050 C16orf89Q6UX73 402 aa17.61■□□□□ 0.41
CLN3-254ENST00000637050 PRR23BQ6ZRT6 265 aa17.61■□□□□ 0.41
CLN3-254ENST00000637050 DEFB107AQ8IZN7 70 aa17.61■□□□□ 0.41
CLN3-254ENST00000637050 PCYOX1LQ8NBM8 494 aa17.61■□□□□ 0.41
CLN3-254ENST00000637050 WDR48Q8TAF3 677 aa17.61■□□□□ 0.41
CLN3-254ENST00000637050 BAHD1Q8TBE0 780 aaPredicted RBP17.61■□□□□ 0.41
CLN3-254ENST00000637050 SAP25Q8TEE9 199 aa17.61■□□□□ 0.41
CLN3-254ENST00000637050 NUDT8Q8WV74 236 aa17.61■□□□□ 0.41
CLN3-254ENST00000637050 VPS33AQ96AX1 596 aa17.61■□□□□ 0.41
CLN3-254ENST00000637050 TESCQ96BS2 214 aa17.61■□□□□ 0.41
CLN3-254ENST00000637050 PPM1MQ96MI6 270 aa17.61■□□□□ 0.41
CLN3-254ENST00000637050 ZNF717Q9BY31 904 aaPredicted RBP17.61■□□□□ 0.41
CLN3-254ENST00000637050 ABCG4Q9H172 646 aa17.61■□□□□ 0.41
CLN3-254ENST00000637050 MMADHCQ9H3L0 296 aaPredicted RBP17.61■□□□□ 0.41
CLN3-254ENST00000637050 NLGN3Q9NZ94 848 aa17.61■□□□□ 0.41
CLN3-254ENST00000637050 PILRAQ9UKJ1 303 aa17.61■□□□□ 0.41
CLN3-254ENST00000637050 SLC6A14Q9UN76 642 aa17.61■□□□□ 0.41
CLN3-254ENST00000637050 RNF215Q9Y6U7 377 aa17.61■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms