RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 PFKFB4Q16877 469 aa19.7■□□□□ 0.74
CLN3-240ENST00000631023 EMBQ6PCB8 327 aa19.7■□□□□ 0.74
CLN3-240ENST00000631023 RAB43Q86YS6 212 aa19.7■□□□□ 0.74
CLN3-240ENST00000631023 ARHGEF39Q8N4T4 335 aa19.7■□□□□ 0.74
CLN3-240ENST00000631023 TRPV3Q8NET8 790 aa19.7■□□□□ 0.74
CLN3-240ENST00000631023 TTLQ8NG68 377 aa19.7■□□□□ 0.74
CLN3-240ENST00000631023 UBTD2Q8WUN7 234 aa19.7■□□□□ 0.74
CLN3-240ENST00000631023 MMABQ96EY8 250 aaPredicted RBP19.7■□□□□ 0.74
CLN3-240ENST00000631023 ZNF282Q9UDV7 671 aaPredicted RBP19.7■□□□□ 0.74
CLN3-240ENST00000631023 NOL12Q9UGY1 213 aaKnown RBP eCLIP19.7■□□□□ 0.74
CLN3-240ENST00000631023 TBK1Q9UHD2 729 aa19.7■□□□□ 0.74
CLN3-240ENST00000631023 MAN2B2Q9Y2E5 1009 aa19.7■□□□□ 0.74
CLN3-240ENST00000631023 V9GYY5 206 aaPredicted RBP19.7■□□□□ 0.74
CLN3-240ENST00000631023 ATRXP46100 2492 aa19.69■□□□□ 0.74
CLN3-240ENST00000631023 K7EPI3 171 aa19.69■□□□□ 0.74
CLN3-240ENST00000631023 NDUFS4O43181 175 aa19.69■□□□□ 0.74
CLN3-240ENST00000631023 RFPL1O75677 317 aa19.69■□□□□ 0.74
CLN3-240ENST00000631023 SERPIND1P05546 499 aa19.69■□□□□ 0.74
CLN3-240ENST00000631023 AGTR2P50052 363 aa19.69■□□□□ 0.74
CLN3-240ENST00000631023 IL10RAQ13651 578 aa19.69■□□□□ 0.74
CLN3-240ENST00000631023 DSG2Q14126 1118 aa19.69■□□□□ 0.74
CLN3-240ENST00000631023 ERCC6LQ2NKX8 1250 aa19.69■□□□□ 0.74
CLN3-240ENST00000631023 XKR6Q5GH73 641 aa19.69■□□□□ 0.74
CLN3-240ENST00000631023 TMEM214Q6NUQ4 689 aaKnown RBP19.69■□□□□ 0.74
CLN3-240ENST00000631023 COX15Q7KZN9 410 aa19.69■□□□□ 0.74
CLN3-240ENST00000631023 LCA5Q86VQ0 697 aa19.69■□□□□ 0.74
CLN3-240ENST00000631023 DTWD1Q8N5C7 304 aa19.69■□□□□ 0.74
CLN3-240ENST00000631023 ACMSDQ8TDX5 336 aa19.69■□□□□ 0.74
CLN3-240ENST00000631023 IP6K3Q96PC2 410 aa19.69■□□□□ 0.74
CLN3-240ENST00000631023 MACROD1Q9BQ69 325 aa19.69■□□□□ 0.74
CLN3-240ENST00000631023 MRPL57Q9BQC6 102 aaKnown RBP19.69■□□□□ 0.74
CLN3-240ENST00000631023 SPNS1Q9H2V7 528 aa19.69■□□□□ 0.74
CLN3-240ENST00000631023 ZNF358Q9NW07 568 aa19.69■□□□□ 0.74
CLN3-240ENST00000631023 GEMIN8Q9NWZ8 242 aaKnown RBP19.69■□□□□ 0.74
CLN3-240ENST00000631023 CPSF2Q9P2I0 782 aaKnown RBP19.69■□□□□ 0.74
CLN3-240ENST00000631023 RALYQ9UKM9 306 aaKnown RBP19.69■□□□□ 0.74
CLN3-240ENST00000631023 ANGPTL3Q9Y5C1 460 aa19.69■□□□□ 0.74
CLN3-240ENST00000631023 TNPO3Q9Y5L0 923 aaKnown RBP19.69■□□□□ 0.74
CLN3-240ENST00000631023 A0A0A6YYC8 382 aaPredicted RBP19.68■□□□□ 0.74
CLN3-240ENST00000631023 URADA6NGE7 173 aa19.68■□□□□ 0.74
CLN3-240ENST00000631023 H0YIG0 161 aa19.68■□□□□ 0.74
CLN3-240ENST00000631023 I3L1I5 382 aaPredicted RBP19.68■□□□□ 0.74
CLN3-240ENST00000631023 TK2O00142 265 aa19.68■□□□□ 0.74
CLN3-240ENST00000631023 FOXS1O43638 330 aa19.68■□□□□ 0.74
CLN3-240ENST00000631023 KLK8O60259 260 aa19.68■□□□□ 0.74
CLN3-240ENST00000631023 DEKP35659 375 aaKnown RBP19.68■□□□□ 0.74
CLN3-240ENST00000631023 HSD17B3P37058 310 aa19.68■□□□□ 0.74
CLN3-240ENST00000631023 LAPTM5Q13571 262 aa19.68■□□□□ 0.74
CLN3-240ENST00000631023 SETDB1Q15047 1291 aa19.68■□□□□ 0.74
CLN3-240ENST00000631023 NKG7Q16617 165 aa19.68■□□□□ 0.74
CLN3-240ENST00000631023 LINC00303Q3SY05 128 aa19.68■□□□□ 0.74
CLN3-240ENST00000631023 PAGE2BQ5JRK9 111 aa19.68■□□□□ 0.74
CLN3-240ENST00000631023 NUP210LQ5VU65 1888 aa19.68■□□□□ 0.74
CLN3-240ENST00000631023 FAM69BQ5VUD6 431 aa19.68■□□□□ 0.74
CLN3-240ENST00000631023 TMIGD1Q6UXZ0 262 aa19.68■□□□□ 0.74
CLN3-240ENST00000631023 KCT2Q8NC54 265 aa19.68■□□□□ 0.74
CLN3-240ENST00000631023 ADAMTS17Q8TE56 1095 aa19.68■□□□□ 0.74
CLN3-240ENST00000631023 PTCD3Q96EY7 689 aaKnown RBP19.68■□□□□ 0.74
CLN3-240ENST00000631023 SEC16BQ96JE7 1060 aa19.68■□□□□ 0.74
CLN3-240ENST00000631023 EFCAB11Q9BUY7 163 aa19.68■□□□□ 0.74
CLN3-240ENST00000631023 YIPF2Q9BWQ6 316 aa19.68■□□□□ 0.74
CLN3-240ENST00000631023 ANKHQ9HCJ1 492 aa19.68■□□□□ 0.74
CLN3-240ENST00000631023 SLC22A7Q9Y694 548 aa19.68■□□□□ 0.74
CLN3-240ENST00000631023 COL6A6A6NMZ7 2263 aa19.68■□□□□ 0.74
CLN3-240ENST00000631023 SMIM24O75264 130 aa19.67■□□□□ 0.74
CLN3-240ENST00000631023 NSA2O95478 260 aaKnown RBP19.67■□□□□ 0.74
CLN3-240ENST00000631023 SHBGP04278 402 aa19.67■□□□□ 0.74
CLN3-240ENST00000631023 SFTPCP11686 197 aa19.67■□□□□ 0.74
CLN3-240ENST00000631023 EPB42P16452 691 aa19.67■□□□□ 0.74
CLN3-240ENST00000631023 GSTM2P28161 218 aa19.67■□□□□ 0.74
CLN3-240ENST00000631023 SKP1P63208 163 aa19.67■□□□□ 0.74
CLN3-240ENST00000631023 IRF8Q02556 426 aa19.67■□□□□ 0.74
CLN3-240ENST00000631023 SLBPQ14493 270 aaKnown RBP eCLIP19.67■□□□□ 0.74
CLN3-240ENST00000631023 HERC3Q15034 1050 aa19.67■□□□□ 0.74
CLN3-240ENST00000631023 HIST2H2ACQ16777 129 aaPredicted RBP19.67■□□□□ 0.74
CLN3-240ENST00000631023 HIST2H2AA3Q6FI13 130 aa19.67■□□□□ 0.74
CLN3-240ENST00000631023 NIPAL1Q6NVV3 410 aa19.67■□□□□ 0.74
CLN3-240ENST00000631023 METTL2BQ6P1Q9 378 aaKnown RBP19.67■□□□□ 0.74
CLN3-240ENST00000631023 TDRPQ86YL5 185 aa19.67■□□□□ 0.74
CLN3-240ENST00000631023 NT5CQ8TCD5 201 aa19.67■□□□□ 0.74
CLN3-240ENST00000631023 AENQ8WTP8 325 aaKnown RBP19.67■□□□□ 0.74
CLN3-240ENST00000631023 NACC2Q96BF6 587 aa19.67■□□□□ 0.74
CLN3-240ENST00000631023 MIEF2Q96C03 454 aa19.67■□□□□ 0.74
CLN3-240ENST00000631023 WDR34Q96EX3 536 aa19.67■□□□□ 0.74
CLN3-240ENST00000631023 MRPL46Q9H2W6 279 aaKnown RBP19.67■□□□□ 0.74
CLN3-240ENST00000631023 NT5DC2Q9H857 520 aa19.67■□□□□ 0.74
CLN3-240ENST00000631023 XPR1Q9UBH6 696 aa19.67■□□□□ 0.74
CLN3-240ENST00000631023 TRPC4Q9UBN4 977 aa19.67■□□□□ 0.74
CLN3-240ENST00000631023 CTSFQ9UBX1 484 aa19.67■□□□□ 0.74
CLN3-240ENST00000631023 MAP4K5Q9Y4K4 846 aa19.67■□□□□ 0.74
CLN3-240ENST00000631023 KCNMB2Q9Y691 235 aa19.67■□□□□ 0.74
CLN3-240ENST00000631023 VSTM2BA6NLU5 285 aa19.66■□□□□ 0.74
CLN3-240ENST00000631023 CNOT3O75175 753 aaKnown RBP19.66■□□□□ 0.74
CLN3-240ENST00000631023 TUBBP07437 444 aa19.66■□□□□ 0.74
CLN3-240ENST00000631023 OTX2P32243 289 aa19.66■□□□□ 0.74
CLN3-240ENST00000631023 CHIT1Q13231 466 aa19.66■□□□□ 0.74
CLN3-240ENST00000631023 NAA30Q147X3 362 aaPredicted RBP19.66■□□□□ 0.74
CLN3-240ENST00000631023 RASA2Q15283 850 aa19.66■□□□□ 0.74
CLN3-240ENST00000631023 PCBP2Q15366 365 aaKnown RBP eCLIP19.66■□□□□ 0.74
CLN3-240ENST00000631023 TBCCQ15814 346 aa19.66■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms