RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 GPRIN3Q6ZVF9 776 aa18.82■□□□□ 0.6
UPF3A-211ENST00000618700 MILR1Q7Z6M3 343 aa18.82■□□□□ 0.6
UPF3A-211ENST00000618700 SYVN1Q86TM6 617 aa18.82■□□□□ 0.6
UPF3A-211ENST00000618700 ARHGEF39Q8N4T4 335 aa18.82■□□□□ 0.6
UPF3A-211ENST00000618700 CSNK1A1LQ8N752 337 aa18.82■□□□□ 0.6
UPF3A-211ENST00000618700 TTLQ8NG68 377 aa18.82■□□□□ 0.6
UPF3A-211ENST00000618700 MDM1Q8TC05 714 aa18.82■□□□□ 0.6
UPF3A-211ENST00000618700 USP7Q93009 1102 aa18.82■□□□□ 0.6
UPF3A-211ENST00000618700 UBE2E3Q969T4 207 aa18.82■□□□□ 0.6
UPF3A-211ENST00000618700 RERGQ96A58 199 aaPredicted RBP18.82■□□□□ 0.6
UPF3A-211ENST00000618700 TM4SF19Q96DZ7 209 aa18.82■□□□□ 0.6
UPF3A-211ENST00000618700 SEC16BQ96JE7 1060 aa18.82■□□□□ 0.6
UPF3A-211ENST00000618700 CNDP1Q96KN2 507 aa18.82■□□□□ 0.6
UPF3A-211ENST00000618700 MAGEB10Q96LZ2 347 aaPredicted RBP18.82■□□□□ 0.6
UPF3A-211ENST00000618700 PAIP2Q9BPZ3 127 aaKnown RBP18.82■□□□□ 0.6
UPF3A-211ENST00000618700 ZPBPQ9BS86 351 aa18.82■□□□□ 0.6
UPF3A-211ENST00000618700 ASPSCR1Q9BZE9 553 aa18.82■□□□□ 0.6
UPF3A-211ENST00000618700 SPRTNQ9H040 489 aaPredicted RBP18.82■□□□□ 0.6
UPF3A-211ENST00000618700 RHBGQ9H310 441 aa18.82■□□□□ 0.6
UPF3A-211ENST00000618700 PCDHGA7Q9Y5G6 932 aa18.82■□□□□ 0.6
UPF3A-211ENST00000618700 TRABD2BA6NFA1 517 aa18.81■□□□□ 0.6
UPF3A-211ENST00000618700 CDRT15L2A8MXV6 281 aa18.81■□□□□ 0.6
UPF3A-211ENST00000618700 H0YIV9 168 aa18.81■□□□□ 0.6
UPF3A-211ENST00000618700 NVLO15381 856 aaKnown RBP18.81■□□□□ 0.6
UPF3A-211ENST00000618700 ZSCAN9O15535 394 aaPredicted RBP18.81■□□□□ 0.6
UPF3A-211ENST00000618700 NR1D1P20393 614 aa18.81■□□□□ 0.6
UPF3A-211ENST00000618700 ARRB2P32121 409 aa18.81■□□□□ 0.6
UPF3A-211ENST00000618700 GALNT1Q10472 559 aaPredicted RBP18.81■□□□□ 0.6
UPF3A-211ENST00000618700 RBBP5Q15291 538 aaKnown RBP18.81■□□□□ 0.6
UPF3A-211ENST00000618700 CHI3L2Q15782 390 aa18.81■□□□□ 0.6
UPF3A-211ENST00000618700 HIST2H2ACQ16777 129 aaPredicted RBP18.81■□□□□ 0.6
UPF3A-211ENST00000618700 WASHC2DQ5SRD0 308 aa18.81■□□□□ 0.6
UPF3A-211ENST00000618700 HIST2H2AA3Q6FI13 130 aa18.81■□□□□ 0.6
UPF3A-211ENST00000618700 ADNP2Q6IQ32 1131 aa18.81■□□□□ 0.6
UPF3A-211ENST00000618700 PWWP2BQ6NUJ5 590 aa18.81■□□□□ 0.6
UPF3A-211ENST00000618700 TLDC1Q6P9B6 456 aa18.81■□□□□ 0.6
UPF3A-211ENST00000618700 VN1R5Q7Z5H4 357 aa18.81■□□□□ 0.6
UPF3A-211ENST00000618700 ASPGQ86U10 573 aa18.81■□□□□ 0.6
UPF3A-211ENST00000618700 MYLK4Q86YV6 388 aaPredicted RBP18.81■□□□□ 0.6
UPF3A-211ENST00000618700 GPR135Q8IZ08 494 aa18.81■□□□□ 0.6
UPF3A-211ENST00000618700 LSMEM2Q8N112 164 aa18.81■□□□□ 0.6
UPF3A-211ENST00000618700 OR7G3Q8NG95 312 aa18.81■□□□□ 0.6
UPF3A-211ENST00000618700 NT5CQ8TCD5 201 aa18.81■□□□□ 0.6
UPF3A-211ENST00000618700 CREB3L4Q8TEY5 395 aa18.81■□□□□ 0.6
UPF3A-211ENST00000618700 DRC3Q9H069 523 aa18.81■□□□□ 0.6
UPF3A-211ENST00000618700 FOXJ2Q9P0K8 574 aa18.81■□□□□ 0.6
UPF3A-211ENST00000618700 TSC22D4Q9Y3Q8 395 aa18.81■□□□□ 0.6
UPF3A-211ENST00000618700 SPTBP11277 2137 aa18.8■□□□□ 0.6
UPF3A-211ENST00000618700 OR4F21O95013 312 aa18.8■□□□□ 0.6
UPF3A-211ENST00000618700 ESRRBO95718 433 aa18.8■□□□□ 0.6
UPF3A-211ENST00000618700 CHRNGP07510 517 aa18.8■□□□□ 0.6
UPF3A-211ENST00000618700 ARL1P40616 181 aaPredicted RBP18.8■□□□□ 0.6
UPF3A-211ENST00000618700 GPS2Q13227 327 aa18.8■□□□□ 0.6
UPF3A-211ENST00000618700 ZRSR2Q15696 482 aaKnown RBP18.8■□□□□ 0.6
UPF3A-211ENST00000618700 CPSF6Q16630 551 aaKnown RBP eCLIP18.8■□□□□ 0.6
UPF3A-211ENST00000618700 TMEM164Q5U3C3 297 aa18.8■□□□□ 0.6
UPF3A-211ENST00000618700 PRAMEF17Q5VTA0 474 aa18.8■□□□□ 0.6
UPF3A-211ENST00000618700 ATG14Q6ZNE5 492 aa18.8■□□□□ 0.6
UPF3A-211ENST00000618700 ZNF655Q8N720 491 aaPredicted RBP18.8■□□□□ 0.6
UPF3A-211ENST00000618700 CAMKVQ8NCB2 501 aa18.8■□□□□ 0.6
UPF3A-211ENST00000618700 TRPV3Q8NET8 790 aa18.8■□□□□ 0.6
UPF3A-211ENST00000618700 WDR20Q8TBZ3 569 aa18.8■□□□□ 0.6
UPF3A-211ENST00000618700 SLC29A3Q9BZD2 475 aa18.8■□□□□ 0.6
UPF3A-211ENST00000618700 TNFRSF12AQ9NP84 129 aa18.8■□□□□ 0.6
UPF3A-211ENST00000618700 MID1IP1Q9NPA3 183 aa18.8■□□□□ 0.6
UPF3A-211ENST00000618700 RUVBL1Q9Y265 456 aaKnown RBP18.8■□□□□ 0.6
UPF3A-211ENST00000618700 PCDHB3Q9Y5E6 796 aa18.8■□□□□ 0.6
UPF3A-211ENST00000618700 PCDHGA11Q9Y5H2 935 aa18.8■□□□□ 0.6
UPF3A-211ENST00000618700 TXNDC9O14530 226 aa18.79■□□□□ 0.6
UPF3A-211ENST00000618700 NDUFS4O43181 175 aa18.79■□□□□ 0.6
UPF3A-211ENST00000618700 BRINP1O60477 761 aa18.79■□□□□ 0.6
UPF3A-211ENST00000618700 SCRG1O75711 98 aa18.79■□□□□ 0.6
UPF3A-211ENST00000618700 TBX6O95947 436 aaPredicted RBP18.79■□□□□ 0.6
UPF3A-211ENST00000618700 STATHP02808 62 aa18.79■□□□□ 0.6
UPF3A-211ENST00000618700 EIF2S1P05198 315 aaKnown RBP18.79■□□□□ 0.6
UPF3A-211ENST00000618700 ENO1P06733 434 aaKnown RBP18.79■□□□□ 0.6
UPF3A-211ENST00000618700 SLC35G6P0C7Q6 338 aa18.79■□□□□ 0.6
UPF3A-211ENST00000618700 CHN1P15882 459 aa18.79■□□□□ 0.6
UPF3A-211ENST00000618700 ZNF28P17035 718 aa18.79■□□□□ 0.6
UPF3A-211ENST00000618700 BGNP21810 368 aa18.79■□□□□ 0.6
UPF3A-211ENST00000618700 RBMS1P29558 406 aaKnown RBP18.79■□□□□ 0.6
UPF3A-211ENST00000618700 SERPINB1P30740 379 aa18.79■□□□□ 0.6
UPF3A-211ENST00000618700 CYP4F2P78329 520 aa18.79■□□□□ 0.6
UPF3A-211ENST00000618700 PWP1Q13610 501 aa18.79■□□□□ 0.6
UPF3A-211ENST00000618700 GRM7Q14831 915 aa18.79■□□□□ 0.6
UPF3A-211ENST00000618700 HKDC1Q2TB90 917 aa18.79■□□□□ 0.6
UPF3A-211ENST00000618700 ARL13AQ5H913 290 aaPredicted RBP18.79■□□□□ 0.6
UPF3A-211ENST00000618700 FAM219BQ5XKK7 198 aa18.79■□□□□ 0.6
UPF3A-211ENST00000618700 TMEM126BQ8IUX1 230 aa18.79■□□□□ 0.6
UPF3A-211ENST00000618700 PPP1R14CQ8TAE6 165 aa18.79■□□□□ 0.6
UPF3A-211ENST00000618700 RAB3IL1Q8TBN0 382 aa18.79■□□□□ 0.6
UPF3A-211ENST00000618700 SLC13A3Q8WWT9 602 aa18.79■□□□□ 0.6
UPF3A-211ENST00000618700 REPS1Q96D71 796 aa18.79■□□□□ 0.6
UPF3A-211ENST00000618700 C10orf90Q96M02 699 aa18.79■□□□□ 0.6
UPF3A-211ENST00000618700 SPRY4Q9C004 299 aa18.79■□□□□ 0.6
UPF3A-211ENST00000618700 SLC6A16Q9GZN6 736 aa18.79■□□□□ 0.6
UPF3A-211ENST00000618700 STARD5Q9NSY2 213 aa18.79■□□□□ 0.6
UPF3A-211ENST00000618700 ACSL6Q9UKU0 697 aa18.79■□□□□ 0.6
UPF3A-211ENST00000618700 TMEM114B3SHH9 223 aa18.78■□□□□ 0.6
UPF3A-211ENST00000618700 ZNF749O43361 778 aa18.78■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms