RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 ZNF891A8MT65 544 aaPredicted RBP5.4□□□□□ -1.54
CPNE3-208ENST00000614678 TARM1B6A8C7 271 aa5.4□□□□□ -1.54
CPNE3-208ENST00000614678 HIST1H2AGP0C0S8 130 aaPredicted RBP5.4□□□□□ -1.54
CPNE3-208ENST00000614678 ZGLP1P0C6A0 271 aa5.4□□□□□ -1.54
CPNE3-208ENST00000614678 MSL3P1P0C860 447 aa5.4□□□□□ -1.54
CPNE3-208ENST00000614678 HIST1H2ADP20671 130 aa5.4□□□□□ -1.54
CPNE3-208ENST00000614678 EEF1A2Q05639 463 aaKnown RBP5.4□□□□□ -1.54
CPNE3-208ENST00000614678 FRG1Q14331 258 aaKnown RBP5.4□□□□□ -1.54
CPNE3-208ENST00000614678 C16orf47Q6ZP98 133 aaPredicted RBP5.4□□□□□ -1.54
CPNE3-208ENST00000614678 SLCO4C1Q6ZQN7 724 aa5.4□□□□□ -1.54
CPNE3-208ENST00000614678 C17orf64Q86WR6 236 aa5.4□□□□□ -1.54
CPNE3-208ENST00000614678 SLC22A18Q96BI1 424 aa5.4□□□□□ -1.54
CPNE3-208ENST00000614678 FBXL8Q96CD0 374 aa5.4□□□□□ -1.54
CPNE3-208ENST00000614678 HIST1H2AHQ96KK5 128 aa5.4□□□□□ -1.54
CPNE3-208ENST00000614678 HIST1H2AJQ99878 128 aa5.4□□□□□ -1.54
CPNE3-208ENST00000614678 H2AFJQ9BTM1 129 aa5.4□□□□□ -1.54
CPNE3-208ENST00000614678 DERL2Q9GZP9 239 aa5.4□□□□□ -1.54
CPNE3-208ENST00000614678 LIN28AQ9H9Z2 209 aaKnown RBP5.4□□□□□ -1.54
CPNE3-208ENST00000614678 FARSBQ9NSD9 589 aaKnown RBP5.4□□□□□ -1.54
CPNE3-208ENST00000614678 CD274Q9NZQ7 290 aa5.4□□□□□ -1.54
CPNE3-208ENST00000614678 TMEM216Q9P0N5 145 aa5.4□□□□□ -1.54
CPNE3-208ENST00000614678 ZNF225Q9UK10 706 aa5.4□□□□□ -1.54
CPNE3-208ENST00000614678 RNF112Q9ULX5 631 aa5.4□□□□□ -1.54
CPNE3-208ENST00000614678 CYSRT1A8MQ03 144 aa5.4□□□□□ -1.55
CPNE3-208ENST00000614678 SUPT3HB4E1H0 165 aa5.4□□□□□ -1.55
CPNE3-208ENST00000614678 CLGNO14967 610 aa5.4□□□□□ -1.55
CPNE3-208ENST00000614678 EIF3HO15372 352 aaKnown RBP eCLIP5.4□□□□□ -1.55
CPNE3-208ENST00000614678 SUPT3HO75486 399 aa5.4□□□□□ -1.55
CPNE3-208ENST00000614678 MAOAP21397 527 aa5.4□□□□□ -1.55
CPNE3-208ENST00000614678 TYK2P29597 1187 aa5.4□□□□□ -1.55
CPNE3-208ENST00000614678 PLA2G16P53816 162 aa5.4□□□□□ -1.55
CPNE3-208ENST00000614678 PMS2P54278 862 aa5.4□□□□□ -1.55
CPNE3-208ENST00000614678 SLC12A2P55011 1212 aa5.4□□□□□ -1.55
CPNE3-208ENST00000614678 RPS15P62841 145 aaKnown RBP5.4□□□□□ -1.55
CPNE3-208ENST00000614678 DOC2AQ14183 400 aa5.4□□□□□ -1.55
CPNE3-208ENST00000614678 SLBPQ14493 270 aaKnown RBP eCLIP5.4□□□□□ -1.55
CPNE3-208ENST00000614678 GRTP1Q5TC63 336 aa5.4□□□□□ -1.55
CPNE3-208ENST00000614678 FRA10AC1Q70Z53 315 aa5.4□□□□□ -1.55
CPNE3-208ENST00000614678 MAGEC3Q8TD91 643 aa5.4□□□□□ -1.55
CPNE3-208ENST00000614678 CREB3L4Q8TEY5 395 aa5.4□□□□□ -1.55
CPNE3-208ENST00000614678 MZB1Q8WU39 189 aa5.4□□□□□ -1.55
CPNE3-208ENST00000614678 SLC5A11Q8WWX8 675 aa5.4□□□□□ -1.55
CPNE3-208ENST00000614678 TM4SF19Q96DZ7 209 aa5.4□□□□□ -1.55
CPNE3-208ENST00000614678 PDLIM5Q96HC4 596 aaKnown RBP5.4□□□□□ -1.55
CPNE3-208ENST00000614678 MAGEB10Q96LZ2 347 aaPredicted RBP5.4□□□□□ -1.55
CPNE3-208ENST00000614678 CSF3RQ99062 836 aa5.4□□□□□ -1.55
CPNE3-208ENST00000614678 SHCBP1LQ9BZQ2 653 aa5.4□□□□□ -1.55
CPNE3-208ENST00000614678 EPN3Q9H201 632 aa5.4□□□□□ -1.55
CPNE3-208ENST00000614678 ZNF304Q9HCX3 659 aa5.4□□□□□ -1.55
CPNE3-208ENST00000614678 ANKRD10Q9NXR5 420 aa5.4□□□□□ -1.55
CPNE3-208ENST00000614678 XPR1Q9UBH6 696 aa5.4□□□□□ -1.55
CPNE3-208ENST00000614678 PTBP2Q9UKA9 531 aaKnown RBP5.4□□□□□ -1.55
CPNE3-208ENST00000614678 PLAAQ9Y263 795 aa5.4□□□□□ -1.55
CPNE3-208ENST00000614678 PCDHGA6Q9Y5G7 932 aa5.4□□□□□ -1.55
CPNE3-208ENST00000614678 ICE1Q9Y2F5 2266 aa5.4□□□□□ -1.55
CPNE3-208ENST00000614678 MAP2K7O14733 419 aa5.4□□□□□ -1.55
CPNE3-208ENST00000614678 DSCR3O14972 297 aa5.4□□□□□ -1.55
CPNE3-208ENST00000614678 NME6O75414 186 aaPredicted RBP5.4□□□□□ -1.55
CPNE3-208ENST00000614678 RECKO95980 971 aa5.4□□□□□ -1.55
CPNE3-208ENST00000614678 SPRP35270 261 aaPredicted RBP5.4□□□□□ -1.55
CPNE3-208ENST00000614678 ID2Q02363 134 aa5.4□□□□□ -1.55
CPNE3-208ENST00000614678 KCNAB2Q13303 367 aa5.4□□□□□ -1.55
CPNE3-208ENST00000614678 DDX39BQ13838 428 aaKnown RBP5.4□□□□□ -1.55
CPNE3-208ENST00000614678 ARHGAP19Q14CB8 494 aa5.4□□□□□ -1.55
CPNE3-208ENST00000614678 TMEM214Q6NUQ4 689 aaKnown RBP5.4□□□□□ -1.55
CPNE3-208ENST00000614678 OVCH1Q7RTY7 1134 aa5.4□□□□□ -1.55
CPNE3-208ENST00000614678 ZC3H7AQ8IWR0 971 aaKnown RBP5.4□□□□□ -1.55
CPNE3-208ENST00000614678 MMP21Q8N119 569 aa5.4□□□□□ -1.55
CPNE3-208ENST00000614678 KIF2BQ8N4N8 673 aa5.4□□□□□ -1.55
CPNE3-208ENST00000614678 SIRT6Q8N6T7 355 aa5.4□□□□□ -1.55
CPNE3-208ENST00000614678 CATSPER1Q8NEC5 780 aa5.4□□□□□ -1.55
CPNE3-208ENST00000614678 OR4K1Q8NGD4 311 aa5.4□□□□□ -1.55
CPNE3-208ENST00000614678 CDKL2Q92772 493 aa5.4□□□□□ -1.55
CPNE3-208ENST00000614678 KIAA1191Q96A73 305 aa5.4□□□□□ -1.55
CPNE3-208ENST00000614678 F2RL3Q96RI0 385 aa5.4□□□□□ -1.55
CPNE3-208ENST00000614678 UBL7Q96S82 380 aaPredicted RBP5.4□□□□□ -1.55
CPNE3-208ENST00000614678 MTERF1Q99551 399 aaKnown RBP5.4□□□□□ -1.55
CPNE3-208ENST00000614678 PLA2G3Q9NZ20 509 aa5.4□□□□□ -1.55
CPNE3-208ENST00000614678 WWOXQ9NZC7 414 aa5.4□□□□□ -1.55
CPNE3-208ENST00000614678 FBXL4Q9UKA2 621 aa5.4□□□□□ -1.55
CPNE3-208ENST00000614678 MKL2Q9ULH7 1088 aa5.4□□□□□ -1.55
CPNE3-208ENST00000614678 VPS13CQ709C8 3753 aa5.39□□□□□ -1.55
CPNE3-208ENST00000614678 IDSB3KWA1 339 aa5.39□□□□□ -1.55
CPNE3-208ENST00000614678 KLHL18O94889 574 aa5.39□□□□□ -1.55
CPNE3-208ENST00000614678 TGFB1P01137 390 aa5.39□□□□□ -1.55
CPNE3-208ENST00000614678 STX2P32856 288 aa5.39□□□□□ -1.55
CPNE3-208ENST00000614678 UQCRFS1P47985 274 aa5.39□□□□□ -1.55
CPNE3-208ENST00000614678 GRM7Q14831 915 aa5.39□□□□□ -1.55
CPNE3-208ENST00000614678 UGT8Q16880 541 aa5.39□□□□□ -1.55
CPNE3-208ENST00000614678 MINDY4Q4G0A6 757 aa5.39□□□□□ -1.55
CPNE3-208ENST00000614678 MFSD4BQ5TF39 518 aa5.39□□□□□ -1.55
CPNE3-208ENST00000614678 NXPE4Q6UWF7 544 aa5.39□□□□□ -1.55
CPNE3-208ENST00000614678 ZNF793Q6ZN11 406 aa5.39□□□□□ -1.55
CPNE3-208ENST00000614678 UBE3DQ7Z6J8 389 aa5.39□□□□□ -1.55
CPNE3-208ENST00000614678 MYLK4Q86YV6 388 aaPredicted RBP5.39□□□□□ -1.55
CPNE3-208ENST00000614678 ABHD11Q8NFV4 315 aa5.39□□□□□ -1.55
CPNE3-208ENST00000614678 OR11G2Q8NGC1 345 aa5.39□□□□□ -1.55
CPNE3-208ENST00000614678 OR2Y1Q8NGV0 311 aa5.39□□□□□ -1.55
CPNE3-208ENST00000614678 CCT6BQ92526 530 aa5.39□□□□□ -1.55
CPNE3-208ENST00000614678 LRFN5Q96NI6 719 aa5.39□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 75.9 ms